Wall clock time and date at job start Mon Mar 30 2020 01:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99605 * 2 1 4 4 H 1.48504 * 109.46837 * 239.99871 * 3 2 1 5 5 H 1.48499 * 109.47414 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47057 * 120.00280 * 3 2 1 7 7 C 1.37880 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99678 * 173.70700 * 7 2 1 9 9 C 1.50700 * 119.99829 * 353.70553 * 7 2 1 10 10 C 1.52998 * 115.55047 * 86.11285 * 9 7 2 11 11 O 1.42902 * 109.47421 * 65.10757 * 10 9 7 12 12 C 1.35655 * 117.00563 * 179.97438 * 11 10 9 13 13 C 1.39082 * 119.96851 * 0.02562 * 12 11 10 14 14 C 1.36396 * 120.25341 * 179.97438 * 13 12 11 15 15 C 1.40572 * 120.26407 * 0.02562 * 14 13 12 16 16 C 1.39668 * 119.39471 * 359.96576 * 15 14 13 17 17 C 1.37931 * 119.89098 * 0.02920 * 16 15 14 18 18 C 1.50977 * 109.57640 * 180.02562 * 16 15 14 19 19 C 1.53493 * 106.25624 * 0.02562 * 18 16 15 20 20 C 1.46934 * 129.96456 * 180.02562 * 15 14 13 21 21 O 1.21294 * 125.91215 * 359.92921 * 20 15 14 22 22 C 1.52997 * 117.49985 * 231.78120 * 9 7 2 23 23 C 1.53004 * 117.50006 * 300.44198 * 9 7 2 24 24 H 0.96995 * 120.00403 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47005 * 305.10778 * 10 9 7 26 26 H 1.09001 * 109.47682 * 185.11039 * 10 9 7 27 27 H 1.08002 * 119.87189 * 359.72117 * 13 12 11 28 28 H 1.08003 * 119.86896 * 179.97438 * 14 13 12 29 29 H 1.08001 * 119.92960 * 179.97438 * 17 16 15 30 30 H 1.09000 * 110.10173 * 119.19513 * 18 16 15 31 31 H 1.08996 * 110.10278 * 240.80515 * 18 16 15 32 32 H 1.09000 * 110.26860 * 241.02728 * 19 18 16 33 33 H 1.08999 * 110.34568 * 119.01058 * 19 18 16 34 34 H 1.08997 * 117.49935 * 215.00047 * 22 9 7 35 35 H 1.09000 * 117.49743 * 0.03093 * 22 9 7 36 36 H 1.08998 * 117.49495 * 359.97438 * 23 9 7 37 37 H 1.09004 * 117.49410 * 144.97281 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0797 -1.1968 -0.1020 9 6 1.2580 -2.4952 0.1442 10 6 0.7195 -3.0941 -1.1566 11 8 1.8127 -3.4601 -2.0010 12 6 1.5058 -4.0107 -3.2022 13 6 0.1751 -4.1951 -3.5622 14 6 -0.1401 -4.7477 -4.7688 15 6 0.8773 -5.1358 -5.6577 16 6 2.2129 -4.9496 -5.2944 17 6 2.5211 -4.3898 -4.0720 18 6 3.1120 -5.4392 -6.4040 19 6 2.1843 -5.9563 -7.5122 20 6 0.7834 -5.7427 -6.9926 21 8 -0.2423 -6.0239 -7.5757 22 6 1.7341 -3.4672 1.2255 23 6 0.4253 -2.6956 1.4121 24 1 -0.4850 0.8400 -0.0004 25 1 0.0979 -2.3575 -1.6658 26 1 0.1234 -3.9782 -0.9303 27 1 -0.6116 -3.9034 -2.8822 28 1 -1.1756 -4.8885 -5.0418 29 1 3.5538 -4.2459 -3.7902 30 1 3.7233 -4.6189 -6.7804 31 1 3.7491 -6.2459 -6.0417 32 1 2.3632 -7.0167 -7.6901 33 1 2.3375 -5.3889 -8.4301 34 1 1.6637 -4.5334 1.0101 35 1 2.5871 -3.1654 1.8333 36 1 0.4180 -1.8865 2.1424 37 1 -0.5063 -3.2538 1.3193 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232416175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:25 Heat of formation + Delta-G solvation = -29.803959 kcal Electronic energy + Delta-G solvation = -19966.470674 eV Core-core repulsion = 16867.608804 eV Total energy + Delta-G solvation = -3098.861870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55676 -39.05860 -37.36875 -36.11683 -34.29261 -32.02605 -30.84729 -28.67694 -27.09696 -25.70432 -25.08720 -22.82506 -21.28035 -20.88898 -19.85735 -19.22753 -17.34987 -16.48185 -16.31030 -15.88512 -15.57748 -15.10813 -14.72565 -14.54960 -13.98901 -13.83449 -13.50622 -13.06769 -13.03829 -12.69818 -12.33612 -12.26330 -12.11813 -11.62887 -11.38204 -11.07000 -10.98171 -10.65942 -10.56942 -10.41852 -10.26480 -9.68059 -9.63834 -8.95972 -8.79972 -8.52942 -8.30976 -7.90845 -6.14184 -4.19181 0.83142 1.46555 2.51512 3.26682 3.31549 3.34456 3.57619 3.87440 4.07916 4.34343 4.45014 4.72054 4.91463 4.95190 5.12328 5.17048 5.25145 5.31897 5.48876 5.55738 5.59921 5.69845 5.74134 5.81960 6.06369 6.13318 6.17387 6.33744 6.37224 6.48082 6.51259 6.57531 6.65929 6.87140 6.94166 7.25029 7.35714 7.56191 7.80086 7.94053 8.31494 8.82675 9.47278 10.95216 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.004208 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.323930 B = 6652.055040 C = 6937.423091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.101 3.899 11 O -0.285 6.285 12 C 0.195 3.805 13 C -0.230 4.230 14 C -0.004 4.004 15 C -0.259 4.259 16 C -0.008 4.008 17 C -0.171 4.171 18 C -0.081 4.081 19 C -0.171 4.171 20 C 0.412 3.588 21 O -0.463 6.463 22 C -0.205 4.205 23 C -0.144 4.144 24 H 0.262 0.738 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.137 0.863 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 -9.788 -9.332 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.038 3.962 10 C 0.026 3.974 11 O -0.196 6.196 12 C 0.145 3.855 13 C -0.249 4.249 14 C -0.022 4.022 15 C -0.260 4.260 16 C -0.009 4.009 17 C -0.189 4.189 18 C -0.118 4.118 19 C -0.208 4.208 20 C 0.292 3.708 21 O -0.340 6.340 22 C -0.242 4.242 23 C -0.182 4.182 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.248 -9.743 -9.515 14.001 hybrid contribution 0.102 1.048 0.172 1.066 sum 3.350 -8.696 -9.343 13.196 Atomic orbital electron populations 1.69970 1.05914 1.26907 1.49158 1.24994 0.94860 0.99085 0.94357 0.86645 0.79686 0.82825 0.78835 1.20096 1.21238 1.20086 1.20346 0.93111 0.88313 1.51028 0.91924 1.18716 0.99042 0.94254 0.84203 1.22793 0.86584 0.96473 0.91511 1.86169 1.37393 1.72083 1.23938 1.19435 0.92579 0.87545 0.85919 1.21063 0.96146 1.08170 0.99525 1.20597 0.98745 0.91533 0.91355 1.20779 0.94577 1.11901 0.98742 1.20218 0.94306 0.93089 0.93283 1.19713 0.99180 1.06806 0.93229 1.20780 0.97040 1.01619 0.92340 1.22281 0.94422 1.04006 1.00136 1.22294 0.90092 0.73224 0.85199 1.90522 1.36320 1.43730 1.63451 1.23017 0.98589 0.95725 1.06876 1.22541 0.92254 1.01211 1.02154 0.92812 0.90897 0.94675 0.84506 0.85639 0.84693 0.88968 0.89018 0.87729 0.87690 0.91494 0.90032 0.89386 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.02 12.88 55.43 0.71 -23.30 16 2 C 0.07 1.86 5.38 -17.82 -0.10 1.77 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.49 -13.00 8.77 -34.44 -0.30 -13.31 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.04 0.91 1.62 -155.66 -0.25 0.66 16 10 C 0.10 2.17 4.56 37.16 0.17 2.34 16 11 O -0.29 -5.93 10.05 -18.67 -0.19 -6.12 16 12 C 0.19 3.45 6.70 -39.00 -0.26 3.18 16 13 C -0.23 -3.78 8.96 -39.93 -0.36 -4.13 16 14 C 0.00 -0.06 10.05 -39.37 -0.40 -0.46 16 15 C -0.26 -3.72 6.11 -104.96 -0.64 -4.36 16 16 C -0.01 -0.11 6.20 -104.07 -0.65 -0.76 16 17 C -0.17 -2.58 9.98 -39.42 -0.39 -2.97 16 18 C -0.08 -0.72 6.80 -27.49 -0.19 -0.91 16 19 C -0.17 -1.52 6.86 -27.51 -0.19 -1.71 16 20 C 0.41 5.51 7.75 -30.67 -0.24 5.27 16 21 O -0.46 -7.55 18.03 5.55 0.10 -7.45 16 22 C -0.20 -4.30 9.96 -26.69 -0.27 -4.57 16 23 C -0.14 -3.20 9.37 -26.69 -0.25 -3.45 16 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.07 1.69 7.66 -51.93 -0.40 1.29 16 26 H 0.04 0.68 7.60 -51.93 -0.39 0.28 16 27 H 0.14 2.19 6.28 -52.49 -0.33 1.86 16 28 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 29 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -29.30 319.81 -8.78 -38.07 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.89 Total: 1.73 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -4.30 Total: -23.39 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.71 Total: -23.30 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.09 Total: -13.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.30 -8.78 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232416175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.271 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds