Wall clock time and date at job start Mon Mar 30 2020 00:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86799 * 120.00403 * 2 1 4 4 H 1.48500 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47131 * 299.99633 * 3 2 1 6 6 H 1.48501 * 109.47021 * 59.99764 * 3 2 1 7 7 C 1.39112 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99560 * 187.81724 * 7 2 1 9 9 N 1.36778 * 120.00109 * 7.81918 * 7 2 1 10 10 C 1.34777 * 119.99659 * 44.74554 * 9 7 2 11 11 O 1.21594 * 120.00651 * 4.47593 * 10 9 7 12 12 C 1.47815 * 119.99815 * 184.47536 * 10 9 7 13 13 C 1.39821 * 119.43812 * 173.11604 * 12 10 9 14 14 C 1.36939 * 119.59955 * 179.97438 * 13 12 10 15 15 C 1.39947 * 118.36975 * 0.02562 * 14 13 12 16 16 N 1.35429 * 133.79829 * 179.97438 * 15 14 13 17 17 C 1.30220 * 109.57922 * 180.02562 * 16 15 14 18 18 N 1.36008 * 110.17165 * 0.02562 * 17 16 15 19 19 H 0.97002 * 126.29076 * 180.02562 * 18 17 16 20 20 C 1.37936 * 107.41475 * 0.26160 * 18 17 16 21 21 N 1.31898 * 133.81580 * 180.45673 * 20 18 17 22 22 C 1.46496 * 120.00193 * 224.74363 * 9 7 2 23 23 C 1.52999 * 117.49541 * 1.35792 * 22 9 7 24 24 C 1.52998 * 60.00163 * 252.50811 * 23 22 9 25 25 H 0.96998 * 119.99971 * 5.00203 * 1 2 3 26 26 H 1.08006 * 120.20229 * 359.97438 * 13 12 10 27 27 H 1.08000 * 120.82171 * 179.97438 * 14 13 12 28 28 H 1.07997 * 124.91274 * 180.02562 * 17 16 15 29 29 H 1.08996 * 115.55142 * 147.06537 * 22 9 7 30 30 H 1.09001 * 117.50172 * 0.02562 * 23 22 9 31 31 H 1.09007 * 117.49362 * 145.02215 * 23 22 9 32 32 H 1.08997 * 117.50328 * 252.51111 * 24 23 22 33 33 H 1.09001 * 117.51778 * 107.47872 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 3.7073 1.3462 0.0006 5 1 1.8887 2.3963 -1.2125 6 1 1.8886 2.3964 1.2125 7 6 2.0087 -1.2048 0.0005 8 1 3.0812 -1.2091 0.1278 9 7 1.3343 -2.3839 -0.1601 10 6 0.3843 -2.4927 -1.1099 11 8 0.1829 -1.5711 -1.8770 12 6 -0.4129 -3.7327 -1.2191 13 6 -1.4897 -3.7812 -2.1097 14 6 -2.2301 -4.9284 -2.2139 15 6 -1.8776 -6.0222 -1.4152 16 7 -2.3754 -7.2728 -1.2658 17 6 -1.6755 -7.9178 -0.3770 18 7 -0.6816 -7.1235 0.1039 19 1 -0.0241 -7.3686 0.7736 20 6 -0.7839 -5.9037 -0.5318 21 7 -0.0961 -4.7801 -0.4679 22 6 1.6446 -3.5283 0.7002 23 6 2.7105 -3.3317 1.7801 24 6 3.0213 -4.1772 0.5434 25 1 -0.4850 0.8368 -0.0732 26 1 -1.7360 -2.9191 -2.7118 27 1 -3.0661 -4.9875 -2.8950 28 1 -1.8578 -8.9360 -0.0667 29 1 0.8042 -4.1814 0.9350 30 1 3.1805 -2.3508 1.8508 31 1 2.5713 -3.8556 2.7258 32 1 3.0867 -5.2572 0.6754 33 1 3.6960 -3.7528 -0.2002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273341318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:40 Heat of formation + Delta-G solvation = 116.001770 kcal Electronic energy + Delta-G solvation = -20720.288012 eV Core-core repulsion = 17556.501160 eV Total energy + Delta-G solvation = -3163.786852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.05879 -39.06225 -37.27866 -35.90051 -33.47985 -32.88100 -31.26224 -30.65967 -29.35526 -25.51939 -24.01877 -22.76986 -21.63850 -21.51844 -20.93422 -19.90360 -18.21826 -17.42619 -16.80600 -16.02034 -15.45045 -15.04406 -14.79111 -14.42965 -14.14963 -13.72153 -13.39141 -13.21281 -12.71459 -12.33519 -11.99533 -11.82688 -11.21236 -11.00824 -10.97581 -10.86351 -10.70621 -10.61194 -10.19897 -9.86774 -9.73232 -8.86953 -8.69743 -8.55488 -8.15938 -8.03076 -7.06046 -6.14485 -3.96247 0.90872 1.63017 2.71166 2.85640 3.26840 3.33584 3.36413 3.84612 4.18486 4.25874 4.56215 4.64362 4.76951 4.95032 5.03785 5.26722 5.32804 5.42187 5.58018 5.84669 5.92609 5.96817 6.13852 6.18411 6.31401 6.37357 6.50581 6.58058 6.86769 6.95913 7.18235 7.26691 7.52605 7.83057 8.11629 8.22612 8.96299 9.09798 9.54206 10.22757 10.88301 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.006295 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.525350 B = 4446.907143 C = 5267.487490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.058 3.942 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.326 4.326 8 H 0.084 0.916 9 N -0.400 5.400 10 C 0.515 3.485 11 O -0.522 6.522 12 C 0.161 3.839 13 C -0.133 4.133 14 C -0.032 4.032 15 C -0.008 4.008 16 N -0.491 5.491 17 C 0.259 3.741 18 N -0.591 5.591 19 H 0.426 0.574 20 C 0.233 3.767 21 N -0.459 5.459 22 C 0.080 3.920 23 C -0.190 4.190 24 C -0.201 4.201 25 H 0.268 0.732 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.219 0.781 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -13.302 1.934 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.154 4.154 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.454 4.454 8 H 0.102 0.898 9 N -0.118 5.118 10 C 0.303 3.697 11 O -0.399 6.399 12 C 0.013 3.987 13 C -0.156 4.156 14 C -0.059 4.059 15 C -0.128 4.128 16 N -0.211 5.211 17 C -0.028 4.028 18 N -0.206 5.206 19 H 0.265 0.735 20 C -0.003 4.003 21 N -0.177 5.177 22 C -0.026 4.026 23 C -0.228 4.228 24 C -0.240 4.240 25 H 0.078 0.922 26 H 0.170 0.830 27 H 0.157 0.843 28 H 0.235 0.765 29 H 0.165 0.835 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.487 -12.934 1.667 13.125 hybrid contribution 0.714 0.689 0.423 1.078 sum -0.773 -12.245 2.090 12.446 Atomic orbital electron populations 1.69822 1.06435 1.27876 1.41279 1.25375 0.95094 0.99566 0.95317 0.86053 0.79666 0.82242 0.77683 1.19434 1.20512 1.20929 1.19131 0.91482 0.82555 1.52244 0.89839 1.42649 1.33461 1.09436 1.26264 1.17205 0.84417 0.84748 0.83376 1.90632 1.68352 1.38275 1.42653 1.21993 0.93759 0.92375 0.90561 1.21620 0.95315 0.98731 0.99925 1.20373 0.99012 0.89676 0.96838 1.19731 0.97563 0.94074 1.01472 1.70304 1.27971 1.04598 1.18191 1.25285 0.86083 0.97875 0.93594 1.42758 1.30078 1.10189 1.37622 0.73498 1.19333 0.96340 0.88422 0.96198 1.67154 1.29120 0.97779 1.23620 1.22790 0.92571 0.92137 0.95119 1.23157 1.05581 1.01667 0.92397 1.23136 1.02411 0.97380 1.01089 0.92208 0.82950 0.84287 0.76486 0.83547 0.87969 0.90105 0.90315 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.97 11.16 55.50 0.62 -23.35 16 2 C 0.06 1.59 4.72 -17.44 -0.08 1.51 16 3 Si 0.92 21.28 29.56 -169.99 -5.03 16.25 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.33 -8.88 7.98 -15.02 -0.12 -9.00 16 8 H 0.08 2.19 7.14 -52.49 -0.37 1.81 16 9 N -0.40 -10.34 2.85 -108.81 -0.31 -10.64 16 10 C 0.52 13.60 6.76 -12.34 -0.08 13.52 16 11 O -0.52 -15.36 13.97 5.28 0.07 -15.28 16 12 C 0.16 3.56 6.67 -82.97 -0.55 3.01 16 13 C -0.13 -2.56 9.55 -39.46 -0.38 -2.94 16 14 C -0.03 -0.53 10.16 -39.41 -0.40 -0.93 16 15 C -0.01 -0.14 7.25 -84.56 -0.61 -0.75 16 16 N -0.49 -7.27 11.27 -11.91 -0.13 -7.40 16 17 C 0.26 2.73 12.96 -89.72 -1.16 1.56 16 18 N -0.59 -6.92 6.22 -13.20 -0.08 -7.01 16 19 H 0.43 3.56 8.96 -40.82 -0.37 3.19 16 20 C 0.23 3.94 8.46 -155.73 -1.32 2.62 16 21 N -0.46 -9.02 5.95 -8.83 -0.05 -9.07 16 22 C 0.08 1.71 5.20 -67.93 -0.35 1.35 16 23 C -0.19 -3.59 9.80 -26.73 -0.26 -3.85 16 24 C -0.20 -3.70 10.38 -26.73 -0.28 -3.98 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.15 2.89 7.62 -52.48 -0.40 2.49 16 27 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.22 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.15 3.06 5.15 -54.97 -0.28 2.78 16 30 H 0.10 2.08 6.68 -51.93 -0.35 1.73 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -34.57 286.61 -9.21 -43.78 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.02 Total: 6.27 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -5.60 Total: 2.14 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.04 Total: -57.48 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.07 Total: -15.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.57 -9.21 -43.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273341318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.781 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds