Wall clock time and date at job start Mon Mar 30 2020 00:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86799 * 120.00403 * 2 1 4 4 H 1.48500 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47131 * 299.99633 * 3 2 1 6 6 H 1.48501 * 109.47021 * 59.99764 * 3 2 1 7 7 C 1.39112 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99560 * 187.81724 * 7 2 1 9 9 N 1.36778 * 120.00109 * 7.81918 * 7 2 1 10 10 C 1.34777 * 119.99659 * 44.74554 * 9 7 2 11 11 O 1.21594 * 120.00651 * 4.47593 * 10 9 7 12 12 C 1.47815 * 119.99815 * 184.47536 * 10 9 7 13 13 C 1.39821 * 119.43812 * 173.11604 * 12 10 9 14 14 C 1.36939 * 119.59955 * 179.97438 * 13 12 10 15 15 C 1.39947 * 118.36975 * 0.02562 * 14 13 12 16 16 N 1.35429 * 133.79829 * 179.97438 * 15 14 13 17 17 C 1.30220 * 109.57922 * 180.02562 * 16 15 14 18 18 N 1.36008 * 110.17165 * 0.02562 * 17 16 15 19 19 H 0.97002 * 126.29076 * 180.02562 * 18 17 16 20 20 C 1.37936 * 107.41475 * 0.26160 * 18 17 16 21 21 N 1.31898 * 133.81580 * 180.45673 * 20 18 17 22 22 C 1.46496 * 120.00193 * 224.74363 * 9 7 2 23 23 C 1.52999 * 117.49541 * 1.35792 * 22 9 7 24 24 C 1.52998 * 60.00163 * 252.50811 * 23 22 9 25 25 H 0.96998 * 119.99971 * 5.00203 * 1 2 3 26 26 H 1.08006 * 120.20229 * 359.97438 * 13 12 10 27 27 H 1.08000 * 120.82171 * 179.97438 * 14 13 12 28 28 H 1.07997 * 124.91274 * 180.02562 * 17 16 15 29 29 H 1.08996 * 115.55142 * 147.06537 * 22 9 7 30 30 H 1.09001 * 117.50172 * 0.02562 * 23 22 9 31 31 H 1.09007 * 117.49362 * 145.02215 * 23 22 9 32 32 H 1.08997 * 117.50328 * 252.51111 * 24 23 22 33 33 H 1.09001 * 117.51778 * 107.47872 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 3.7073 1.3462 0.0006 5 1 1.8887 2.3963 -1.2125 6 1 1.8886 2.3964 1.2125 7 6 2.0087 -1.2048 0.0005 8 1 3.0812 -1.2091 0.1278 9 7 1.3343 -2.3839 -0.1601 10 6 0.3843 -2.4927 -1.1099 11 8 0.1829 -1.5711 -1.8770 12 6 -0.4129 -3.7327 -1.2191 13 6 -1.4897 -3.7812 -2.1097 14 6 -2.2301 -4.9284 -2.2139 15 6 -1.8776 -6.0222 -1.4152 16 7 -2.3754 -7.2728 -1.2658 17 6 -1.6755 -7.9178 -0.3770 18 7 -0.6816 -7.1235 0.1039 19 1 -0.0241 -7.3686 0.7736 20 6 -0.7839 -5.9037 -0.5318 21 7 -0.0961 -4.7801 -0.4679 22 6 1.6446 -3.5283 0.7002 23 6 2.7105 -3.3317 1.7801 24 6 3.0213 -4.1772 0.5434 25 1 -0.4850 0.8368 -0.0732 26 1 -1.7360 -2.9191 -2.7118 27 1 -3.0661 -4.9875 -2.8950 28 1 -1.8578 -8.9360 -0.0667 29 1 0.8042 -4.1814 0.9350 30 1 3.1805 -2.3508 1.8508 31 1 2.5713 -3.8556 2.7258 32 1 3.0867 -5.2572 0.6754 33 1 3.6960 -3.7528 -0.2002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273341318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:40 Heat of formation + Delta-G solvation = 93.432157 kcal Electronic energy + Delta-G solvation = -20721.266704 eV Core-core repulsion = 17556.501160 eV Total energy + Delta-G solvation = -3164.765544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.25956 -40.74258 -38.78679 -37.68909 -34.82705 -34.72040 -32.95689 -32.13988 -30.78505 -27.36835 -25.47216 -24.19193 -23.14380 -22.84655 -22.39617 -21.62643 -19.42183 -19.07753 -18.24315 -17.76247 -16.91019 -16.68811 -16.26240 -15.99514 -15.50653 -15.41866 -14.98260 -14.84497 -14.17840 -13.82929 -13.65135 -13.50093 -12.97403 -12.86387 -12.65845 -12.24361 -12.20735 -12.11535 -11.92024 -11.59906 -11.18549 -10.82504 -10.42646 -9.90347 -9.71562 -9.47011 -8.99948 -8.17405 -6.06489 -0.43098 0.23679 1.38969 1.43715 1.53876 1.61416 1.72857 2.26976 2.37854 2.89697 3.05654 3.13151 3.18131 3.43142 3.50695 3.75137 3.97892 4.12411 4.26841 4.35052 4.41544 4.55792 4.71370 4.81215 4.86761 5.05521 5.08075 5.11935 5.41160 5.43053 5.48310 5.67744 6.14528 6.25870 6.69561 6.82260 6.96365 7.16561 7.59433 8.28112 8.85312 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.006295 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.525350 B = 4446.907143 C = 5267.487490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.345 4.345 8 H 0.084 0.916 9 N -0.418 5.418 10 C 0.506 3.494 11 O -0.572 6.572 12 C 0.121 3.879 13 C -0.141 4.141 14 C -0.027 4.027 15 C -0.004 4.004 16 N -0.527 5.527 17 C 0.307 3.693 18 N -0.576 5.576 19 H 0.445 0.555 20 C 0.212 3.788 21 N -0.454 5.454 22 C 0.049 3.951 23 C -0.180 4.180 24 C -0.178 4.178 25 H 0.263 0.737 26 H 0.141 0.859 27 H 0.169 0.831 28 H 0.285 0.715 29 H 0.154 0.846 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 -17.167 3.250 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.200 4.200 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.474 4.474 8 H 0.102 0.898 9 N -0.136 5.136 10 C 0.295 3.705 11 O -0.452 6.452 12 C -0.025 4.025 13 C -0.164 4.164 14 C -0.055 4.055 15 C -0.124 4.124 16 N -0.248 5.248 17 C 0.020 3.980 18 N -0.192 5.192 19 H 0.288 0.712 20 C -0.027 4.027 21 N -0.171 5.171 22 C -0.055 4.055 23 C -0.218 4.218 24 C -0.217 4.217 25 H 0.072 0.928 26 H 0.159 0.841 27 H 0.186 0.814 28 H 0.300 0.700 29 H 0.170 0.830 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.354 -16.832 3.039 17.157 hybrid contribution 0.600 1.453 0.040 1.572 sum -0.754 -15.379 3.079 15.703 Atomic orbital electron populations 1.69955 1.08017 1.28133 1.43883 1.26277 0.95825 1.02989 0.94899 0.85080 0.79046 0.77969 0.77384 1.17934 1.21466 1.19840 1.19346 0.91722 0.83728 1.52554 0.89816 1.42857 1.33505 1.10261 1.26973 1.17889 0.84353 0.85671 0.82623 1.90558 1.69771 1.40520 1.44391 1.21319 0.95448 0.91978 0.93801 1.21512 0.95458 0.99656 0.99808 1.20581 0.99069 0.88717 0.97090 1.20039 0.97013 0.94956 1.00391 1.70406 1.29742 1.03708 1.20931 1.26714 0.82664 0.98958 0.89629 1.42869 1.30778 1.08157 1.37445 0.71201 1.19576 0.96497 0.89187 0.97393 1.66876 1.29370 0.98136 1.22760 1.22953 0.94149 0.91808 0.96625 1.23211 1.03560 1.01310 0.93718 1.23129 0.99340 0.99168 1.00015 0.92797 0.84072 0.81389 0.69996 0.83004 0.89969 0.86678 0.86665 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.51 11.16 21.69 0.24 -53.26 16 2 C 0.01 0.36 4.72 84.98 0.40 0.77 16 3 Si 0.98 45.52 29.56 68.60 2.03 47.55 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.35 -19.64 7.98 84.13 0.67 -18.97 16 8 H 0.08 4.57 7.14 -2.91 -0.02 4.55 16 9 N -0.42 -22.56 2.85 -616.43 -1.75 -24.31 16 10 C 0.51 28.33 6.76 86.78 0.59 28.92 16 11 O -0.57 -36.13 13.97 -4.01 -0.06 -36.18 16 12 C 0.12 5.57 6.67 41.93 0.28 5.85 16 13 C -0.14 -5.66 9.55 22.35 0.21 -5.44 16 14 C -0.03 -0.90 10.16 22.38 0.23 -0.67 16 15 C 0.00 -0.11 7.25 39.70 0.29 0.18 16 16 N -0.53 -13.32 11.27 -191.61 -2.16 -15.48 16 17 C 0.31 4.57 12.96 180.03 2.33 6.90 16 18 N -0.58 -10.68 6.22 -195.68 -1.22 -11.90 16 19 H 0.44 5.03 8.96 -92.71 -0.83 4.20 16 20 C 0.21 6.65 8.46 134.06 1.13 7.78 16 21 N -0.45 -17.68 5.95 -181.86 -1.08 -18.76 16 22 C 0.05 2.12 5.20 44.99 0.23 2.36 16 23 C -0.18 -6.60 9.80 30.59 0.30 -6.30 16 24 C -0.18 -6.29 10.38 30.59 0.32 -5.97 16 25 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.14 5.83 7.62 -2.91 -0.02 5.81 16 27 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 28 H 0.28 0.21 8.06 -2.91 -0.02 0.18 16 29 H 0.15 6.29 5.15 -8.39 -0.04 6.24 16 30 H 0.08 3.35 6.68 -2.39 -0.02 3.34 16 31 H 0.12 3.37 8.14 -2.38 -0.02 3.35 16 32 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -82.36 286.61 3.30 -79.06 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.31 Total: 17.90 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.99 Total: 15.39 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.97 Total: -123.72 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.06 Total: -36.18 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -82.36 3.30 -79.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273341318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.489 kcal (2) G-P(sol) polarization free energy of solvation -82.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds