Wall clock time and date at job start Mon Mar 30 2020 01:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47293 * 2 1 4 4 C 1.36616 * 120.00037 * 262.29743 * 3 2 1 5 5 H 1.08001 * 120.00218 * 191.05060 * 4 3 2 6 6 C 1.39222 * 120.00010 * 11.04343 * 4 3 2 7 7 N 1.31254 * 119.99741 * 27.14903 * 6 4 3 8 8 Si 1.86799 * 120.00231 * 207.14205 * 6 4 3 9 9 H 1.48501 * 109.46879 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47065 * 120.00461 * 8 6 4 11 11 H 1.48501 * 109.47564 * 240.00483 * 8 6 4 12 12 C 1.34779 * 120.00061 * 82.29003 * 3 2 1 13 13 O 1.21558 * 120.00034 * 182.42729 * 12 3 2 14 14 C 1.48187 * 120.00075 * 2.43368 * 12 3 2 15 15 N 1.33577 * 119.23198 * 352.29819 * 14 12 3 16 16 N 1.28920 * 122.00930 * 179.97438 * 15 14 12 17 17 C 1.33851 * 119.76494 * 0.04957 * 16 15 14 18 18 C 1.40315 * 121.76232 * 179.97438 * 17 16 15 19 19 C 1.36208 * 119.63032 * 180.02562 * 18 17 16 20 20 C 1.39439 * 121.06634 * 359.97438 * 19 18 17 21 21 C 1.36142 * 121.00858 * 0.02562 * 20 19 18 22 22 C 1.40502 * 119.56594 * 359.97438 * 21 20 19 23 23 N 1.32194 * 119.23694 * 172.32215 * 14 12 3 24 24 H 1.08996 * 109.47384 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46817 * 300.00424 * 1 2 3 26 26 H 1.09004 * 109.47101 * 59.99740 * 1 2 3 27 27 H 1.08998 * 109.47280 * 239.99809 * 2 1 3 28 28 H 1.09000 * 109.46808 * 119.99848 * 2 1 3 29 29 H 0.97001 * 119.99854 * 179.97438 * 7 6 4 30 30 H 1.07999 * 120.18645 * 359.97438 * 18 17 16 31 31 H 1.07998 * 119.46596 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.49108 * 179.72405 * 20 19 18 33 33 H 1.08000 * 120.21908 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3956 1.9724 -1.1725 5 1 2.9192 2.9168 -1.1571 6 6 2.1052 1.3572 -2.3872 7 7 1.0707 0.5554 -2.4859 8 14 3.1875 1.6732 -3.8765 9 1 4.2804 2.6074 -3.5049 10 1 3.7712 0.3906 -4.3452 11 1 2.3718 2.2722 -4.9632 12 6 2.0954 2.0688 1.1567 13 8 2.4587 3.2288 1.1511 14 6 1.7374 1.4106 2.4352 15 7 1.1943 0.1904 2.4110 16 7 0.8630 -0.4316 3.4905 17 6 1.0618 0.1494 4.6799 18 6 0.7165 -0.4890 5.8807 19 6 0.9375 0.1428 7.0670 20 6 1.5031 1.4166 7.1094 21 6 1.8512 2.0678 5.9657 22 6 1.6385 1.4481 4.7228 23 7 1.9625 2.0447 3.5730 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.8681 0.1271 -3.3323 30 1 0.2772 -1.4755 5.8645 31 1 0.6704 -0.3509 7.9896 32 1 1.6630 1.8958 8.0640 33 1 2.2881 3.0544 6.0134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280906832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:18 Heat of formation + Delta-G solvation = 101.560474 kcal Electronic energy + Delta-G solvation = -20462.728022 eV Core-core repulsion = 17298.314949 eV Total energy + Delta-G solvation = -3164.413073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55845 -38.76243 -37.52226 -35.47619 -34.49931 -32.48712 -31.40059 -30.67925 -29.44627 -26.56213 -25.43350 -24.39531 -22.37476 -22.26134 -20.58257 -18.93819 -18.48187 -17.04847 -16.34790 -15.92776 -15.46871 -15.06189 -14.77711 -14.28988 -14.14681 -13.75124 -13.40722 -12.99319 -12.44658 -12.32731 -12.10550 -12.01373 -11.73921 -11.61344 -11.29769 -11.21330 -10.84439 -10.81818 -10.48336 -10.31386 -9.83175 -9.26550 -9.14489 -8.86489 -8.60718 -8.47529 -7.94908 -6.73062 -3.93938 -0.00909 0.45876 1.85214 2.60409 3.02719 3.11655 3.19220 3.67638 3.70631 3.97385 4.05252 4.25435 4.32189 4.64627 4.73155 4.90656 4.93970 5.08383 5.23290 5.48468 5.70445 5.80157 5.96506 6.10745 6.19967 6.43548 6.58349 6.69999 6.75756 7.01767 7.13954 7.25877 7.30817 7.70354 7.83330 8.22543 8.68621 8.91475 9.10012 9.80926 10.22794 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040346 B = 0.005001 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.829212 B = 5597.649632 C = 6138.504340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.110 3.890 3 N -0.384 5.384 4 C -0.287 4.287 5 H 0.117 0.883 6 C 0.035 3.965 7 N -0.819 5.819 8 Si 0.929 3.071 9 H -0.262 1.262 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.463 3.537 13 O -0.575 6.575 14 C 0.237 3.763 15 N -0.227 5.227 16 N -0.159 5.159 17 C -0.012 4.012 18 C -0.058 4.058 19 C -0.117 4.117 20 C -0.080 4.080 21 C -0.094 4.094 22 C 0.136 3.864 23 N -0.421 5.421 24 H 0.041 0.959 25 H 0.026 0.974 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.278 0.722 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 -4.889 12.945 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.013 4.013 3 N -0.098 5.098 4 C -0.416 4.416 5 H 0.134 0.866 6 C -0.174 4.174 7 N -0.454 5.454 8 Si 0.753 3.247 9 H -0.186 1.186 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.251 3.749 13 O -0.460 6.460 14 C -0.029 4.029 15 N -0.089 5.089 16 N -0.023 5.023 17 C -0.145 4.145 18 C -0.080 4.080 19 C -0.138 4.138 20 C -0.103 4.103 21 C -0.114 4.114 22 C -0.005 4.005 23 N -0.144 5.144 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.140 -4.751 11.826 12.796 hybrid contribution 0.345 0.281 0.133 0.465 sum -0.795 -4.470 11.959 12.792 Atomic orbital electron populations 1.21910 0.95669 1.00123 1.01214 1.21936 0.95651 0.82187 1.01553 1.43941 1.48839 1.11666 1.05343 1.20122 1.32054 1.07703 0.81754 0.86571 1.25547 0.95776 0.96423 0.99686 1.70112 1.20844 1.27133 1.27323 0.85832 0.80324 0.78882 0.79646 1.18551 1.19991 1.20246 1.16562 0.90888 0.86344 0.81151 1.90639 1.54981 1.15741 1.84592 1.25004 0.93518 0.88989 0.95397 1.74803 1.08340 1.07514 1.18253 1.74478 1.06924 1.26107 0.94813 1.20848 1.02317 0.95263 0.96084 1.20719 0.97645 1.00037 0.89587 1.21013 0.99399 0.95289 0.98090 1.21078 0.96114 0.94618 0.98450 1.20843 1.00312 1.00883 0.89344 1.19766 0.94818 0.91725 0.94179 1.69238 1.14560 1.33493 0.97062 0.94016 0.95460 0.89721 0.89407 0.90801 0.91163 0.84013 0.84658 0.84564 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.06 37.16 0.34 -2.60 16 2 C 0.11 2.58 4.87 -4.04 -0.02 2.56 16 3 N -0.38 -10.09 2.63 -115.78 -0.30 -10.40 16 4 C -0.29 -7.67 9.37 -15.05 -0.14 -7.81 16 5 H 0.12 3.25 7.36 -52.49 -0.39 2.86 16 6 C 0.04 0.86 4.79 -17.43 -0.08 0.78 16 7 N -0.82 -19.73 8.82 55.51 0.49 -19.24 16 8 Si 0.93 18.86 29.63 -169.99 -5.04 13.82 16 9 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 12 C 0.46 12.58 7.57 -12.17 -0.09 12.48 16 13 O -0.58 -17.28 16.48 5.31 0.09 -17.19 16 14 C 0.24 5.70 7.40 -156.49 -1.16 4.54 16 15 N -0.23 -4.96 5.33 32.08 0.17 -4.79 16 16 N -0.16 -3.07 11.68 32.28 0.38 -2.70 16 17 C -0.01 -0.20 6.68 -84.70 -0.57 -0.77 16 18 C -0.06 -0.70 10.00 -39.53 -0.40 -1.09 16 19 C -0.12 -1.08 9.95 -39.86 -0.40 -1.47 16 20 C -0.08 -0.77 9.95 -39.89 -0.40 -1.17 16 21 C -0.09 -1.27 10.01 -39.48 -0.40 -1.66 16 22 C 0.14 2.46 6.61 -84.77 -0.56 1.90 16 23 N -0.42 -9.48 10.23 -9.02 -0.09 -9.57 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.62 6.56 -51.93 -0.34 0.28 16 26 H 0.08 2.06 6.23 -51.93 -0.32 1.73 16 27 H 0.09 2.09 6.00 -51.93 -0.31 1.78 16 28 H 0.07 1.68 5.35 -51.98 -0.28 1.40 16 29 H 0.28 6.16 8.31 -40.82 -0.34 5.82 16 30 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -31.21 282.57 -6.81 -38.02 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.89 Total: 2.09 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.87 Total: 5.69 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.64 Total: -46.69 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.09 Total: -17.19 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.04 Total: 13.82 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.21 -6.81 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280906832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.581 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds