Wall clock time and date at job start Mon Mar 30 2020 01:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47293 * 2 1 4 4 C 1.36616 * 120.00037 * 262.29743 * 3 2 1 5 5 H 1.08001 * 120.00218 * 191.05060 * 4 3 2 6 6 C 1.39222 * 120.00010 * 11.04343 * 4 3 2 7 7 N 1.31254 * 119.99741 * 27.14903 * 6 4 3 8 8 Si 1.86799 * 120.00231 * 207.14205 * 6 4 3 9 9 H 1.48501 * 109.46879 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47065 * 120.00461 * 8 6 4 11 11 H 1.48501 * 109.47564 * 240.00483 * 8 6 4 12 12 C 1.34779 * 120.00061 * 82.29003 * 3 2 1 13 13 O 1.21558 * 120.00034 * 182.42729 * 12 3 2 14 14 C 1.48187 * 120.00075 * 2.43368 * 12 3 2 15 15 N 1.33577 * 119.23198 * 352.29819 * 14 12 3 16 16 N 1.28920 * 122.00930 * 179.97438 * 15 14 12 17 17 C 1.33851 * 119.76494 * 0.04957 * 16 15 14 18 18 C 1.40315 * 121.76232 * 179.97438 * 17 16 15 19 19 C 1.36208 * 119.63032 * 180.02562 * 18 17 16 20 20 C 1.39439 * 121.06634 * 359.97438 * 19 18 17 21 21 C 1.36142 * 121.00858 * 0.02562 * 20 19 18 22 22 C 1.40502 * 119.56594 * 359.97438 * 21 20 19 23 23 N 1.32194 * 119.23694 * 172.32215 * 14 12 3 24 24 H 1.08996 * 109.47384 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46817 * 300.00424 * 1 2 3 26 26 H 1.09004 * 109.47101 * 59.99740 * 1 2 3 27 27 H 1.08998 * 109.47280 * 239.99809 * 2 1 3 28 28 H 1.09000 * 109.46808 * 119.99848 * 2 1 3 29 29 H 0.97001 * 119.99854 * 179.97438 * 7 6 4 30 30 H 1.07999 * 120.18645 * 359.97438 * 18 17 16 31 31 H 1.07998 * 119.46596 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.49108 * 179.72405 * 20 19 18 33 33 H 1.08000 * 120.21908 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3956 1.9724 -1.1725 5 1 2.9192 2.9168 -1.1571 6 6 2.1052 1.3572 -2.3872 7 7 1.0707 0.5554 -2.4859 8 14 3.1875 1.6732 -3.8765 9 1 4.2804 2.6074 -3.5049 10 1 3.7712 0.3906 -4.3452 11 1 2.3718 2.2722 -4.9632 12 6 2.0954 2.0688 1.1567 13 8 2.4587 3.2288 1.1511 14 6 1.7374 1.4106 2.4352 15 7 1.1943 0.1904 2.4110 16 7 0.8630 -0.4316 3.4905 17 6 1.0618 0.1494 4.6799 18 6 0.7165 -0.4890 5.8807 19 6 0.9375 0.1428 7.0670 20 6 1.5031 1.4166 7.1094 21 6 1.8512 2.0678 5.9657 22 6 1.6385 1.4481 4.7228 23 7 1.9625 2.0447 3.5730 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.8681 0.1271 -3.3323 30 1 0.2772 -1.4755 5.8645 31 1 0.6704 -0.3509 7.9896 32 1 1.6630 1.8958 8.0640 33 1 2.2881 3.0544 6.0134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280906832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:18 Heat of formation + Delta-G solvation = 79.971152 kcal Electronic energy + Delta-G solvation = -20463.664205 eV Core-core repulsion = 17298.314949 eV Total energy + Delta-G solvation = -3165.349257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.01924 -40.52710 -38.84389 -37.35508 -36.10721 -34.26073 -32.84838 -31.85383 -31.30832 -28.17324 -26.91429 -26.01184 -24.14479 -23.50821 -22.22670 -20.41259 -19.82758 -18.96267 -17.92511 -17.38738 -17.05741 -16.71833 -16.04531 -15.85889 -15.57989 -15.32282 -15.07225 -14.78275 -13.98429 -13.63466 -13.57235 -13.40032 -13.23808 -12.98113 -12.92698 -12.84520 -12.70527 -12.34595 -12.10970 -12.08765 -11.56011 -11.01185 -10.76001 -10.49779 -10.30650 -9.89652 -9.69387 -8.56258 -5.97420 -1.28623 -0.90503 0.63659 1.18825 1.42183 1.48961 1.57802 2.01765 2.15419 2.37719 2.54896 2.76291 2.93541 2.99928 3.28236 3.44867 3.79523 3.95117 4.07764 4.26997 4.52489 4.59598 4.80831 4.85454 4.93058 4.94974 5.09187 5.19743 5.24278 5.26572 5.36242 5.63356 5.75223 5.81996 5.97702 6.33161 6.94142 7.12164 7.23160 7.83899 8.41003 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040346 B = 0.005001 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.829212 B = 5597.649632 C = 6138.504340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.119 3.881 3 N -0.390 5.390 4 C -0.349 4.349 5 H 0.086 0.914 6 C 0.015 3.985 7 N -0.835 5.835 8 Si 0.997 3.003 9 H -0.273 1.273 10 H -0.258 1.258 11 H -0.267 1.267 12 C 0.445 3.555 13 O -0.625 6.625 14 C 0.218 3.782 15 N -0.246 5.246 16 N -0.172 5.172 17 C -0.008 4.008 18 C -0.074 4.074 19 C -0.073 4.073 20 C -0.038 4.038 21 C -0.120 4.120 22 C 0.112 3.888 23 N -0.452 5.452 24 H 0.065 0.935 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.288 0.712 30 H 0.171 0.829 31 H 0.196 0.804 32 H 0.193 0.807 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 -6.912 17.347 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.004 4.004 3 N -0.104 5.104 4 C -0.478 4.478 5 H 0.103 0.897 6 C -0.194 4.194 7 N -0.469 5.469 8 Si 0.818 3.182 9 H -0.198 1.198 10 H -0.182 1.182 11 H -0.192 1.192 12 C 0.234 3.766 13 O -0.513 6.513 14 C -0.050 4.050 15 N -0.107 5.107 16 N -0.033 5.033 17 C -0.143 4.143 18 C -0.095 4.095 19 C -0.094 4.094 20 C -0.060 4.060 21 C -0.139 4.139 22 C -0.028 4.028 23 N -0.174 5.174 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.188 0.812 31 H 0.213 0.787 32 H 0.210 0.790 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.928 -6.846 16.206 17.698 hybrid contribution 0.462 0.832 -0.481 1.066 sum -1.466 -6.014 15.726 16.900 Atomic orbital electron populations 1.21725 0.94945 1.01028 0.99538 1.21928 0.96101 0.81010 1.01373 1.44036 1.48919 1.12373 1.05082 1.19962 1.35943 1.08626 0.83257 0.89659 1.26283 0.96194 0.95620 1.01259 1.70134 1.20965 1.27223 1.28530 0.84862 0.78148 0.79071 0.76077 1.19801 1.18206 1.19177 1.17102 0.90755 0.86193 0.82594 1.90544 1.57034 1.17836 1.85914 1.24284 0.95818 0.90311 0.94592 1.74668 1.09589 1.06716 1.19715 1.74346 1.07476 1.26075 0.95421 1.21524 1.00934 0.94953 0.96924 1.21202 0.98411 1.01546 0.88370 1.21807 0.94367 0.94172 0.99052 1.21821 0.91198 0.94029 0.98990 1.21159 1.02124 1.01971 0.88689 1.20499 0.95330 0.92697 0.94296 1.69108 1.15385 1.34756 0.98166 0.91617 0.96535 0.91811 0.90154 0.90115 0.90158 0.81199 0.78681 0.79018 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.36 9.06 71.98 0.65 -4.71 16 2 C 0.12 5.90 4.87 86.38 0.42 6.32 16 3 N -0.39 -22.32 2.63 -638.49 -1.68 -24.00 16 4 C -0.35 -20.37 9.37 84.18 0.79 -19.58 16 5 H 0.09 5.33 7.36 -2.91 -0.02 5.31 16 6 C 0.02 0.78 4.79 85.02 0.41 1.19 16 7 N -0.83 -41.69 8.82 21.71 0.19 -41.50 16 8 Si 1.00 40.28 29.63 68.60 2.03 42.31 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 11 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 12 C 0.45 26.42 7.57 86.89 0.66 27.08 16 13 O -0.62 -41.24 16.48 -3.90 -0.06 -41.30 16 14 C 0.22 11.20 7.40 137.32 1.02 12.21 16 15 N -0.25 -11.27 5.33 -52.42 -0.28 -11.55 16 16 N -0.17 -6.64 11.68 -51.79 -0.60 -7.24 16 17 C -0.01 -0.26 6.68 40.31 0.27 0.01 16 18 C -0.07 -1.37 10.00 22.30 0.22 -1.15 16 19 C -0.07 -0.74 9.95 22.09 0.22 -0.52 16 20 C -0.04 -0.45 9.95 22.07 0.22 -0.23 16 21 C -0.12 -2.81 10.01 22.33 0.22 -2.59 16 22 C 0.11 3.96 6.61 40.41 0.27 4.23 16 23 N -0.45 -21.30 10.23 -182.46 -1.87 -23.16 16 24 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.02 0.77 6.56 -2.39 -0.02 0.76 16 26 H 0.06 3.25 6.23 -2.39 -0.01 3.23 16 27 H 0.08 4.04 6.00 -2.39 -0.01 4.02 16 28 H 0.08 3.89 5.35 -2.45 -0.01 3.87 16 29 H 0.29 12.95 8.31 -92.71 -0.77 12.18 16 30 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.20 -0.01 8.06 -2.91 -0.02 -0.04 16 32 H 0.19 0.40 8.06 -2.91 -0.02 0.38 16 33 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -79.80 282.57 4.25 -75.55 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.16 Total: 8.63 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 5.37 Total: 22.26 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -4.24 Total: -107.45 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.06 Total: -41.30 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -79.80 4.25 -75.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280906832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.521 kcal (2) G-P(sol) polarization free energy of solvation -79.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds