Wall clock time and date at job start Mon Mar 30 2020 01:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47014 * 2 1 4 4 C 1.50703 * 109.47311 * 240.00148 * 2 1 3 5 5 H 1.08000 * 119.99996 * 240.00123 * 4 2 1 6 6 C 1.37878 * 119.99782 * 59.99944 * 4 2 1 7 7 N 1.31516 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46817 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46698 * 119.99831 * 8 6 4 11 11 H 1.48499 * 109.46757 * 239.99881 * 8 6 4 12 12 N 1.46494 * 109.47400 * 119.99780 * 2 1 3 13 13 C 1.34779 * 120.00249 * 275.00538 * 12 2 1 14 14 O 1.21482 * 119.99986 * 359.97438 * 13 12 2 15 15 C 1.48436 * 119.99698 * 179.97438 * 13 12 2 16 16 N 1.33492 * 119.22603 * 359.97438 * 15 13 12 17 17 N 1.28918 * 122.02388 * 179.42805 * 16 15 13 18 18 C 1.33816 * 119.74280 * 0.85659 * 17 16 15 19 19 C 1.40331 * 121.78207 * 179.18703 * 18 17 16 20 20 C 1.36191 * 119.62932 * 180.02562 * 19 18 17 21 21 C 1.39452 * 121.06436 * 0.02562 * 20 19 18 22 22 C 1.36134 * 121.01598 * 359.97293 * 21 20 19 23 23 C 1.40507 * 119.56241 * 0.27811 * 22 21 20 24 24 N 1.32060 * 119.21540 * 179.97438 * 15 13 12 25 25 H 1.09004 * 109.47003 * 300.00184 * 1 2 3 26 26 H 1.09009 * 109.47234 * 59.99815 * 1 2 3 27 27 H 1.08997 * 109.47296 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00236 * 179.97438 * 7 6 4 29 29 H 0.97004 * 119.99926 * 94.99561 * 12 2 1 30 30 H 1.08005 * 120.18785 * 359.97438 * 19 18 17 31 31 H 1.07992 * 119.47096 * 180.02562 * 20 19 18 32 32 H 1.08003 * 119.48693 * 179.97438 * 21 20 19 33 33 H 1.08002 * 120.21551 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 7 2.0183 -0.6905 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8584 1.1606 2.4116 15 6 2.6413 -0.7181 3.5692 16 7 2.9534 -2.0137 3.4919 17 7 3.3976 -2.6717 4.5077 18 6 3.5401 -2.0556 5.6870 19 6 4.0037 -2.7344 6.8243 20 6 4.1315 -2.0643 8.0030 21 6 3.8084 -0.7112 8.1002 22 6 3.3556 -0.0187 7.0191 23 6 3.2055 -0.6775 5.7871 24 7 2.7619 -0.0443 4.6985 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7095 1.1620 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 4.2569 -3.7827 6.7655 31 1 4.4889 -2.5891 8.8766 32 1 3.9190 -0.2049 9.0477 33 1 3.1087 1.0288 7.1090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283146353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:42 Heat of formation + Delta-G solvation = 64.066834 kcal Electronic energy + Delta-G solvation = -19548.558550 eV Core-core repulsion = 16382.519631 eV Total energy + Delta-G solvation = -3166.038920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12536 -39.09159 -38.05754 -35.52318 -34.75583 -32.72286 -31.99680 -31.21047 -29.04276 -26.47184 -25.62427 -25.23860 -22.84872 -22.05263 -20.12829 -19.40509 -18.99483 -17.70735 -16.51699 -16.11838 -15.84878 -15.33134 -15.14157 -14.64324 -14.37827 -14.10426 -13.27270 -13.20497 -12.75818 -12.57275 -12.43405 -12.27896 -12.10998 -11.72441 -11.64391 -11.10330 -10.96612 -10.78283 -10.32130 -10.23952 -9.86671 -9.74107 -9.28129 -9.07569 -9.04126 -8.57138 -8.02415 -6.12529 -4.21599 -0.48737 -0.04307 1.37591 2.18070 3.05446 3.21223 3.26334 3.34105 3.35640 3.38527 3.68299 3.85890 4.10624 4.32081 4.33532 4.48123 4.62602 4.80423 5.09096 5.20379 5.29439 5.39192 5.56591 5.63354 5.80768 6.13243 6.69983 6.80420 6.92887 7.09787 7.31003 7.49330 7.67966 7.86108 8.09148 8.11129 8.54474 8.70763 8.94688 9.45249 10.93732 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040216 B = 0.003817 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.080491 B = 7333.508982 C = 7812.663972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.263 3.737 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.066 0.934 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.677 5.677 13 C 0.569 3.431 14 O -0.514 6.514 15 C 0.231 3.769 16 N -0.230 5.230 17 N -0.143 5.143 18 C 0.012 3.988 19 C -0.065 4.065 20 C -0.096 4.096 21 C -0.076 4.076 22 C -0.086 4.086 23 C 0.131 3.869 24 N -0.399 5.399 25 H 0.016 0.984 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.402 0.598 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -6.373 21.129 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.572 4.572 5 H 0.084 0.916 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.326 5.326 13 C 0.347 3.653 14 O -0.388 6.388 15 C -0.041 4.041 16 N -0.092 5.092 17 N -0.007 5.007 18 C -0.121 4.121 19 C -0.087 4.087 20 C -0.117 4.117 21 C -0.098 4.098 22 C -0.105 4.105 23 C -0.008 4.008 24 N -0.121 5.121 25 H 0.035 0.965 26 H 0.113 0.887 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.236 0.764 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.357 -5.700 20.023 21.497 hybrid contribution 0.503 -0.524 -0.041 0.728 sum 5.860 -6.224 19.981 21.733 Atomic orbital electron populations 1.22105 0.97938 0.99524 1.01180 1.18951 0.91385 0.94143 0.79318 0.92848 1.21244 1.32564 1.13401 0.89987 0.91626 1.24883 0.94747 0.94949 0.99079 1.69909 1.35884 1.22434 1.23890 0.86349 0.78619 0.79565 0.82343 1.19583 1.20835 1.20877 1.46506 1.62509 1.14421 1.09140 1.17109 0.80411 0.86256 0.81542 1.90786 1.49982 1.14448 1.83552 1.25071 0.94805 0.89250 0.95011 1.74026 1.06780 1.07084 1.21272 1.74500 1.03355 1.27487 0.95344 1.21017 1.00821 0.93893 0.96327 1.20797 0.97052 1.00941 0.89929 1.21193 0.97922 0.94551 0.98026 1.21223 0.95348 0.94306 0.98971 1.20941 0.98743 1.01389 0.89471 1.19808 0.95242 0.91271 0.94472 1.69192 1.08185 1.36761 0.97952 0.96498 0.88747 0.95100 0.92557 0.76361 0.83281 0.83918 0.83847 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.15 0.34 -3.41 16 2 C 0.26 6.83 2.56 -69.09 -0.18 6.66 16 3 H 0.05 1.57 7.58 -51.93 -0.39 1.17 16 4 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16 5 H 0.07 1.70 7.74 -52.49 -0.41 1.30 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.68 -15.25 5.06 -55.69 -0.28 -15.53 16 13 C 0.57 12.74 7.82 -12.06 -0.09 12.65 16 14 O -0.51 -13.07 16.52 5.38 0.09 -12.99 16 15 C 0.23 4.47 7.65 -156.56 -1.20 3.27 16 16 N -0.23 -4.10 10.72 32.10 0.34 -3.76 16 17 N -0.14 -2.22 11.68 32.28 0.38 -1.84 16 18 C 0.01 0.16 6.68 -84.71 -0.57 -0.41 16 19 C -0.07 -0.55 10.00 -39.53 -0.40 -0.94 16 20 C -0.10 -0.54 9.95 -39.87 -0.40 -0.94 16 21 C -0.08 -0.46 9.95 -39.89 -0.40 -0.86 16 22 C -0.09 -0.83 10.01 -39.48 -0.40 -1.22 16 23 C 0.13 1.84 6.61 -84.77 -0.56 1.28 16 24 N -0.40 -7.16 10.22 -8.99 -0.09 -7.25 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 2.55 6.07 -51.92 -0.32 2.23 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.40 8.25 7.84 -40.82 -0.32 7.93 16 30 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 32 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 33 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 296.95 15.07 4.48 4.48 Total: -1.00 -32.51 296.95 -6.82 -39.32 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.11 Total: 2.91 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -4.23 Total: 3.14 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.98 Total: -52.66 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.51 -6.82 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283146353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.391 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds