Wall clock time and date at job start Mon Mar 30 2020 01:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47014 * 2 1 4 4 C 1.50703 * 109.47311 * 240.00148 * 2 1 3 5 5 H 1.08000 * 119.99996 * 240.00123 * 4 2 1 6 6 C 1.37878 * 119.99782 * 59.99944 * 4 2 1 7 7 N 1.31516 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46817 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46698 * 119.99831 * 8 6 4 11 11 H 1.48499 * 109.46757 * 239.99881 * 8 6 4 12 12 N 1.46494 * 109.47400 * 119.99780 * 2 1 3 13 13 C 1.34779 * 120.00249 * 275.00538 * 12 2 1 14 14 O 1.21482 * 119.99986 * 359.97438 * 13 12 2 15 15 C 1.48436 * 119.99698 * 179.97438 * 13 12 2 16 16 N 1.33492 * 119.22603 * 359.97438 * 15 13 12 17 17 N 1.28918 * 122.02388 * 179.42805 * 16 15 13 18 18 C 1.33816 * 119.74280 * 0.85659 * 17 16 15 19 19 C 1.40331 * 121.78207 * 179.18703 * 18 17 16 20 20 C 1.36191 * 119.62932 * 180.02562 * 19 18 17 21 21 C 1.39452 * 121.06436 * 0.02562 * 20 19 18 22 22 C 1.36134 * 121.01598 * 359.97293 * 21 20 19 23 23 C 1.40507 * 119.56241 * 0.27811 * 22 21 20 24 24 N 1.32060 * 119.21540 * 179.97438 * 15 13 12 25 25 H 1.09004 * 109.47003 * 300.00184 * 1 2 3 26 26 H 1.09009 * 109.47234 * 59.99815 * 1 2 3 27 27 H 1.08997 * 109.47296 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00236 * 179.97438 * 7 6 4 29 29 H 0.97004 * 119.99926 * 94.99561 * 12 2 1 30 30 H 1.08005 * 120.18785 * 359.97438 * 19 18 17 31 31 H 1.07992 * 119.47096 * 180.02562 * 20 19 18 32 32 H 1.08003 * 119.48693 * 179.97438 * 21 20 19 33 33 H 1.08002 * 120.21551 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 7 2.0183 -0.6905 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8584 1.1606 2.4116 15 6 2.6413 -0.7181 3.5692 16 7 2.9534 -2.0137 3.4919 17 7 3.3976 -2.6717 4.5077 18 6 3.5401 -2.0556 5.6870 19 6 4.0037 -2.7344 6.8243 20 6 4.1315 -2.0643 8.0030 21 6 3.8084 -0.7112 8.1002 22 6 3.3556 -0.0187 7.0191 23 6 3.2055 -0.6775 5.7871 24 7 2.7619 -0.0443 4.6985 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7095 1.1620 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 4.2569 -3.7827 6.7655 31 1 4.4889 -2.5891 8.8766 32 1 3.9190 -0.2049 9.0477 33 1 3.1087 1.0288 7.1090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283146353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:42 Heat of formation + Delta-G solvation = 39.674466 kcal Electronic energy + Delta-G solvation = -19549.616283 eV Core-core repulsion = 16382.519631 eV Total energy + Delta-G solvation = -3167.096652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.21121 -40.71570 -39.04696 -37.04156 -36.34654 -34.53264 -33.22527 -32.07807 -30.89261 -27.61198 -27.34965 -26.73997 -23.79539 -23.55709 -21.85728 -20.51008 -20.41882 -19.05973 -17.93303 -17.38936 -17.20855 -17.12768 -16.26119 -15.94145 -15.78657 -15.37544 -15.02955 -14.48983 -14.01650 -13.84399 -13.68332 -13.62218 -13.21776 -13.09081 -13.04809 -12.89778 -12.78239 -12.49445 -12.31683 -12.14003 -11.38680 -11.15004 -10.75184 -10.66078 -10.59517 -10.00760 -9.79929 -8.20197 -6.37881 -1.44915 -1.09589 0.52110 1.09756 1.45065 1.45290 1.57124 1.64456 1.96507 2.25440 2.41233 2.67500 2.69208 3.05123 3.10809 3.26207 3.68712 3.82310 3.98478 4.19672 4.42536 4.67211 4.72713 4.82266 4.86210 5.00140 5.03556 5.17892 5.29048 5.45366 5.53191 5.60307 5.68047 5.80259 6.01513 6.58998 6.67109 6.97699 7.10168 7.34805 8.86865 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040216 B = 0.003817 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.080491 B = 7333.508982 C = 7812.663972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.010 0.990 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.976 3.024 9 H -0.262 1.262 10 H -0.275 1.275 11 H -0.281 1.281 12 N -0.674 5.674 13 C 0.572 3.428 14 O -0.557 6.557 15 C 0.204 3.796 16 N -0.253 5.253 17 N -0.159 5.159 18 C 0.009 3.991 19 C -0.078 4.078 20 C -0.060 4.060 21 C -0.037 4.037 22 C -0.111 4.111 23 C 0.111 3.889 24 N -0.428 5.428 25 H 0.014 0.986 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.268 0.732 29 H 0.411 0.589 30 H 0.174 0.826 31 H 0.199 0.801 32 H 0.195 0.805 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.543 -8.481 24.808 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.027 0.973 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.800 3.200 9 H -0.186 1.186 10 H -0.201 1.201 11 H -0.207 1.207 12 N -0.323 5.323 13 C 0.352 3.648 14 O -0.434 6.434 15 C -0.068 4.068 16 N -0.113 5.113 17 N -0.021 5.021 18 C -0.126 4.126 19 C -0.099 4.099 20 C -0.080 4.080 21 C -0.059 4.059 22 C -0.130 4.130 23 C -0.029 4.029 24 N -0.151 5.151 25 H 0.033 0.967 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.248 0.752 30 H 0.191 0.809 31 H 0.216 0.784 32 H 0.212 0.788 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.077 -7.857 23.694 25.946 hybrid contribution 0.095 0.117 -0.702 0.718 sum 7.172 -7.740 22.991 25.297 Atomic orbital electron populations 1.21930 0.97546 0.99864 1.00083 1.18615 0.91688 0.92263 0.80788 0.97251 1.21515 1.33010 1.13762 0.90539 0.90923 1.25793 0.94711 0.95566 1.02212 1.70043 1.36735 1.23729 1.24806 0.85231 0.78177 0.78461 0.78082 1.18601 1.20077 1.20689 1.46236 1.62763 1.14682 1.08640 1.17461 0.79164 0.85811 0.82355 1.90730 1.51758 1.16282 1.84605 1.24056 0.98355 0.90051 0.94304 1.73915 1.08496 1.06239 1.22699 1.74353 1.03996 1.27570 0.96137 1.21608 1.00355 0.93876 0.96745 1.21253 0.97228 1.02324 0.89137 1.21916 0.93602 0.94157 0.98333 1.21915 0.90328 0.94360 0.99304 1.21243 1.00626 1.02284 0.88855 1.20458 0.95521 0.92169 0.94715 1.69036 1.09324 1.37973 0.98742 0.96711 0.90584 0.93870 0.92291 0.75231 0.80852 0.78439 0.78764 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.19 9.26 71.98 0.67 -6.53 16 2 C 0.27 14.82 2.56 44.25 0.11 14.94 16 3 H 0.01 0.61 7.58 -2.38 -0.02 0.59 16 4 C -0.55 -30.53 8.73 25.60 0.22 -30.30 16 5 H 0.07 3.84 7.74 -2.91 -0.02 3.81 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 8 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 9 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.67 -32.45 5.06 -448.42 -2.27 -34.72 16 13 C 0.57 27.68 7.82 86.96 0.68 28.36 16 14 O -0.56 -30.72 16.52 -3.66 -0.06 -30.78 16 15 C 0.20 8.46 7.65 137.46 1.05 9.51 16 16 N -0.25 -9.52 10.72 -52.35 -0.56 -10.09 16 17 N -0.16 -5.01 11.68 -51.80 -0.61 -5.61 16 18 C 0.01 0.21 6.68 40.33 0.27 0.48 16 19 C -0.08 -0.96 10.00 22.30 0.22 -0.74 16 20 C -0.06 -0.25 9.95 22.09 0.22 -0.03 16 21 C -0.04 -0.21 9.95 22.07 0.22 0.01 16 22 C -0.11 -1.82 10.01 22.33 0.22 -1.60 16 23 C 0.11 3.06 6.61 40.42 0.27 3.32 16 24 N -0.43 -16.21 10.22 -182.36 -1.86 -18.08 16 25 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.08 4.31 6.07 -2.38 -0.01 4.30 16 27 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.41 17.97 7.84 -92.71 -0.73 17.24 16 30 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 31 H 0.20 -1.06 8.06 -2.91 -0.02 -1.08 16 32 H 0.20 -0.66 8.06 -2.91 -0.02 -0.69 16 33 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -78.80 296.95 1.95 -76.85 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.44 Total: 11.39 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 4.61 Total: 18.85 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -5.05 Total: -121.45 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.06 Total: -30.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -78.80 1.95 -76.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283146353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.525 kcal (2) G-P(sol) polarization free energy of solvation -78.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds