Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34820 * 126.58741 * 2 1 4 4 C 1.36631 * 106.83311 * 180.12686 * 3 2 1 5 5 C 1.47478 * 125.77608 * 179.83793 * 4 3 2 6 6 O 1.21600 * 120.00255 * 359.71868 * 5 4 3 7 7 N 1.34780 * 119.99833 * 179.71826 * 5 4 3 8 8 C 1.39144 * 119.99791 * 174.86515 * 7 5 4 9 9 C 1.39509 * 119.83755 * 326.02837 * 8 7 5 10 10 C 1.36359 * 120.16376 * 179.71970 * 9 8 7 11 11 C 1.40878 * 119.83573 * 0.25737 * 10 9 8 12 12 C 1.41132 * 120.16492 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00010 * 207.86741 * 12 11 10 14 14 C 1.39903 * 119.99973 * 27.85921 * 12 11 10 15 15 N 1.30873 * 119.99925 * 11.31720 * 14 12 11 16 16 Si 1.86805 * 119.99959 * 191.31348 * 14 12 11 17 17 H 1.48506 * 109.46833 * 90.00598 * 16 14 12 18 18 H 1.48508 * 109.47067 * 210.00123 * 16 14 12 19 19 H 1.48492 * 109.47266 * 330.00339 * 16 14 12 20 20 C 1.40876 * 119.67232 * 359.97438 * 11 10 9 21 21 C 1.36360 * 119.83382 * 0.02562 * 20 11 10 22 22 N 1.34416 * 108.44708 * 359.57835 * 4 3 2 23 23 N 1.28757 * 109.52463 * 0.26440 * 22 4 3 24 24 H 1.08999 * 109.47515 * 270.31094 * 1 2 3 25 25 H 1.09002 * 109.46923 * 30.31632 * 1 2 3 26 26 H 1.08998 * 109.46910 * 150.31375 * 1 2 3 27 27 H 1.08000 * 126.58720 * 359.97438 * 3 2 1 28 28 H 0.97000 * 119.99948 * 354.86877 * 7 5 4 29 29 H 1.08001 * 119.91503 * 0.02562 * 9 8 7 30 30 H 1.07997 * 120.08253 * 180.27617 * 10 9 8 31 31 H 0.97008 * 119.99965 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.08453 * 180.02562 * 20 11 10 33 33 H 1.08004 * 119.91819 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2686 1.0825 0.0000 4 6 3.5545 0.6207 -0.0029 5 6 4.7704 1.4554 -0.0073 6 8 4.6756 2.6677 -0.0139 7 7 5.9866 0.8745 -0.0041 8 6 7.1316 1.6571 -0.1162 9 6 7.1079 2.8145 -0.8946 10 6 8.2245 3.5894 -1.0044 11 6 9.4057 3.2157 -0.3338 12 6 10.5653 4.0129 -0.4421 13 1 11.5417 3.5624 -0.3411 14 6 10.4500 5.3866 -0.6807 15 7 9.2834 5.9719 -0.5839 16 14 11.9611 6.3854 -1.1372 17 1 12.1209 6.3946 -2.6136 18 1 11.8002 7.7783 -0.6480 19 1 13.1635 5.7774 -0.5129 20 6 9.4233 2.0429 0.4465 21 6 8.2990 1.2780 0.5470 22 7 3.5239 -0.7231 0.0048 23 7 2.3009 -1.1256 0.0066 24 1 -0.3634 0.0056 1.0276 25 1 -0.3633 0.8872 -0.5188 26 1 -0.3633 -0.8928 -0.5089 27 1 1.9560 2.1163 -0.0004 28 1 6.0636 -0.0891 0.0762 29 1 6.2014 3.1002 -1.4076 30 1 8.2034 4.4875 -1.6038 31 1 9.2035 6.9245 -0.7489 32 1 10.3251 1.7504 0.9639 33 1 8.3109 0.3788 1.1452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311021340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = 64.128951 kcal Electronic energy + Delta-G solvation = -19319.475062 eV Core-core repulsion = 16153.438836 eV Total energy + Delta-G solvation = -3166.036226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.23637 -40.98503 -38.97937 -36.23559 -35.62105 -34.65350 -32.19490 -31.39568 -30.76721 -28.75268 -26.95172 -24.74551 -23.25486 -23.17197 -22.55429 -21.14174 -19.34446 -19.16391 -18.01429 -17.29071 -17.16426 -16.92812 -15.98977 -15.71724 -15.62624 -15.56749 -14.85022 -14.47484 -14.11344 -14.00800 -13.88760 -13.63421 -13.35976 -13.14346 -12.79797 -12.68418 -12.33096 -12.28072 -11.73668 -11.70154 -11.33103 -11.29090 -10.99166 -10.53053 -10.36848 -9.44862 -8.82100 -8.55388 -6.26940 0.11533 0.47579 0.98337 1.15770 1.16949 1.40892 1.52149 1.55167 2.22401 2.26054 2.26867 2.81501 3.17970 3.50456 3.74891 3.89218 3.96235 4.38862 4.42509 4.46278 4.50344 4.68949 4.76750 4.97934 5.11823 5.17943 5.31925 5.42878 5.44453 5.69477 5.85900 6.07075 6.12357 6.33992 6.58524 6.70122 6.90116 6.95337 7.00738 7.29124 8.39370 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048141 B = 0.003497 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.481837 B = 8005.912970 C = 8490.013193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.349 5.349 3 C 0.111 3.889 4 C -0.120 4.120 5 C 0.588 3.412 6 O -0.563 6.563 7 N -0.632 5.632 8 C 0.008 3.992 9 C -0.098 4.098 10 C -0.172 4.172 11 C 0.073 3.927 12 C -0.492 4.492 13 H 0.081 0.919 14 C 0.027 3.973 15 N -0.833 5.833 16 Si 0.988 3.012 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.256 1.256 20 C -0.218 4.218 21 C -0.101 4.101 22 N -0.226 5.226 23 N -0.088 5.088 24 H 0.109 0.891 25 H 0.129 0.871 26 H 0.111 0.889 27 H 0.236 0.764 28 H 0.416 0.584 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.286 0.714 32 H 0.112 0.888 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 -8.075 0.460 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.134 5.134 3 C -0.048 4.048 4 C -0.260 4.260 5 C 0.375 3.625 6 O -0.441 6.441 7 N -0.275 5.275 8 C -0.085 4.085 9 C -0.119 4.119 10 C -0.192 4.192 11 C 0.071 3.929 12 C -0.522 4.522 13 H 0.099 0.901 14 C -0.186 4.186 15 N -0.460 5.460 16 Si 0.809 3.191 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.179 1.179 20 C -0.238 4.238 21 C -0.121 4.121 22 N -0.099 5.099 23 N -0.069 5.069 24 H 0.128 0.872 25 H 0.147 0.853 26 H 0.130 0.870 27 H 0.252 0.748 28 H 0.253 0.747 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.575 -8.570 0.442 18.665 hybrid contribution 0.446 1.224 -0.119 1.308 sum -16.130 -7.346 0.322 17.727 Atomic orbital electron populations 1.22757 0.69048 1.07889 1.06717 1.50714 1.10762 1.04332 1.47619 1.23798 0.88972 0.96379 0.95640 1.21296 0.94733 0.90327 1.19671 1.17175 0.82418 0.86374 0.76529 1.90810 1.86813 1.14541 1.51938 1.42688 1.03599 1.10601 1.70584 1.17282 0.87284 0.97195 1.06787 1.20485 0.97367 0.95361 0.98643 1.20959 0.93974 1.00724 1.03554 1.18032 0.93525 0.92020 0.89366 1.19825 0.94162 0.93348 1.44841 0.90071 1.26848 1.00490 0.99362 0.91922 1.69920 1.27072 1.12681 1.36300 0.85112 0.77675 0.76962 0.79355 1.18736 1.19525 1.17923 1.20854 0.98512 0.99383 1.05094 1.20401 0.92224 1.00362 0.99106 1.74589 1.13947 1.10560 1.10834 1.81856 0.93453 1.07947 1.23600 0.87246 0.85314 0.87002 0.74754 0.74658 0.88458 0.87857 0.90339 0.87022 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 11.51 127.77 1.47 1.79 16 2 N -0.35 -5.94 4.03 -368.55 -1.49 -7.43 16 3 C 0.11 2.27 11.31 83.86 0.95 3.22 16 4 C -0.12 -3.57 6.99 40.81 0.29 -3.29 16 5 C 0.59 22.35 7.54 86.68 0.65 23.00 16 6 O -0.56 -25.15 14.55 -4.03 -0.06 -25.21 16 7 N -0.63 -24.30 5.30 -306.00 -1.62 -25.92 16 8 C 0.01 0.36 6.28 38.59 0.24 0.60 16 9 C -0.10 -5.13 8.57 22.14 0.19 -4.94 16 10 C -0.17 -9.70 8.61 22.48 0.19 -9.51 16 11 C 0.07 4.07 5.56 -21.28 -0.12 3.95 16 12 C -0.49 -26.99 9.05 23.38 0.21 -26.78 16 13 H 0.08 4.21 7.87 -2.91 -0.02 4.19 16 14 C 0.03 1.42 5.25 85.24 0.45 1.86 16 15 N -0.83 -45.69 10.80 21.82 0.24 -45.46 16 16 Si 0.99 39.18 29.57 68.60 2.03 41.21 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 20 C -0.22 -10.79 9.74 22.48 0.22 -10.57 16 21 C -0.10 -4.49 9.89 22.14 0.22 -4.27 16 22 N -0.23 -6.69 12.04 -50.00 -0.60 -7.29 16 23 N -0.09 -2.21 13.78 37.02 0.51 -1.70 16 24 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.13 -0.16 8.14 -2.39 -0.02 -0.17 16 26 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.24 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.42 13.64 8.50 -92.71 -0.79 12.85 16 29 H 0.10 5.06 6.43 -2.91 -0.02 5.04 16 30 H 0.10 6.13 6.16 -2.91 -0.02 6.11 16 31 H 0.29 14.25 8.30 -92.70 -0.77 13.48 16 32 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 33 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -74.19 297.56 4.34 -69.85 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.38 Total: 26.87 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 4.96 Total: -24.93 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -2.96 Total: -87.80 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -74.19 4.34 -69.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311021340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.979 kcal (2) G-P(sol) polarization free energy of solvation -74.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds