Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34825 * 126.59638 * 2 1 4 4 C 1.36612 * 106.83687 * 180.26349 * 3 2 1 5 5 C 1.47501 * 125.77405 * 180.02562 * 4 3 2 6 6 O 1.21608 * 119.99445 * 359.94769 * 5 4 3 7 7 N 1.34771 * 120.00092 * 179.97438 * 5 4 3 8 8 C 1.39871 * 119.99811 * 174.89305 * 7 5 4 9 9 C 1.39312 * 119.95018 * 325.51748 * 8 7 5 10 10 C 1.38483 * 120.42453 * 179.76353 * 9 8 7 11 11 C 1.37688 * 120.32645 * 0.51410 * 10 9 8 12 12 C 1.40742 * 119.88268 * 359.74581 * 11 10 9 13 13 C 1.41418 * 120.20402 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99735 * 205.16543 * 13 12 11 15 15 C 1.39927 * 120.00190 * 25.17067 * 13 12 11 16 16 N 1.30832 * 120.00077 * 16.80399 * 15 13 12 17 17 Si 1.86796 * 120.00038 * 196.81171 * 15 13 12 18 18 H 1.48498 * 109.47012 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47542 * 119.99715 * 17 15 13 20 20 H 1.48511 * 109.46974 * 239.99663 * 17 15 13 21 21 C 1.38254 * 119.94801 * 145.79402 * 8 7 5 22 22 N 1.34404 * 108.45627 * 0.02562 * 4 3 2 23 23 N 1.28759 * 109.52608 * 0.02562 * 22 4 3 24 24 H 1.08997 * 109.46838 * 269.71216 * 1 2 3 25 25 H 1.09004 * 109.47014 * 29.70620 * 1 2 3 26 26 H 1.08997 * 109.47182 * 149.70410 * 1 2 3 27 27 H 1.08001 * 126.58119 * 0.24716 * 3 2 1 28 28 H 0.97003 * 120.00223 * 354.89870 * 7 5 4 29 29 H 1.07995 * 119.78532 * 0.02562 * 9 8 7 30 30 H 1.08000 * 119.83312 * 180.23092 * 10 9 8 31 31 H 1.07999 * 120.05312 * 179.76281 * 11 10 9 32 32 H 0.97005 * 120.00026 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.16425 * 359.95770 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5544 0.6206 -0.0060 5 6 4.7705 1.4553 -0.0077 6 8 4.6757 2.6677 -0.0045 7 7 5.9866 0.8745 -0.0133 8 6 7.1373 1.6620 -0.1227 9 6 7.1169 2.8193 -0.8980 10 6 8.2491 3.6089 -1.0092 11 6 9.4114 3.2528 -0.3627 12 6 9.4485 2.0835 0.4198 13 6 10.6384 1.7115 1.0872 14 1 10.8171 0.6757 1.3355 15 6 11.5843 2.6854 1.4261 16 7 11.2475 3.9497 1.4338 17 14 13.3278 2.1806 1.8673 18 1 13.4513 0.7031 1.7841 19 1 14.2808 2.8116 0.9192 20 1 13.6372 2.6258 3.2499 21 6 8.2948 1.2878 0.5341 22 7 3.5238 -0.7231 -0.0102 23 7 2.3008 -1.1257 -0.0076 24 1 -0.3633 -0.0052 1.0276 25 1 -0.3633 0.8926 -0.5093 26 1 -0.3633 -0.8873 -0.5184 27 1 1.9562 2.1162 0.0037 28 1 6.0638 -0.0898 0.0584 29 1 6.2111 3.1047 -1.4121 30 1 8.2215 4.5061 -1.6098 31 1 10.2929 3.8698 -0.4556 32 1 11.9033 4.6249 1.6684 33 1 8.3129 0.3888 1.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313408859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = 85.403450 kcal Electronic energy + Delta-G solvation = -19290.845270 eV Core-core repulsion = 16125.731576 eV Total energy + Delta-G solvation = -3165.113694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.27989 -39.42772 -37.11006 -34.87847 -34.36389 -33.00635 -31.09178 -29.79216 -28.65716 -27.61919 -25.20906 -23.80546 -22.36595 -21.31410 -20.84522 -19.76422 -18.04815 -17.50441 -16.39994 -16.16263 -15.57963 -15.10540 -14.85033 -14.63811 -14.29203 -14.15792 -13.53817 -13.45868 -12.93778 -12.82454 -12.25225 -12.19913 -11.64970 -11.39381 -11.17014 -11.11886 -10.87746 -10.56626 -10.48501 -10.20825 -9.60697 -9.51481 -9.35994 -9.17989 -8.92566 -7.42519 -6.89146 -6.68439 -4.31941 1.00329 1.68919 1.86304 2.82181 2.90054 3.11230 3.16710 3.24988 3.53056 3.69184 3.97946 4.14135 4.19678 4.60246 4.68677 4.72985 4.87956 4.94457 5.20395 5.68961 5.74865 6.14217 6.33261 6.58292 6.78945 6.97368 7.04896 7.08528 7.29189 7.61902 7.67086 7.82725 8.02664 8.07900 8.18101 8.35402 8.58938 8.72254 8.93827 9.00923 10.24877 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044383 B = 0.003493 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.714029 B = 8013.775419 C = 8423.076314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.368 5.368 3 C 0.091 3.909 4 C -0.092 4.092 5 C 0.595 3.405 6 O -0.521 6.521 7 N -0.649 5.649 8 C 0.152 3.848 9 C -0.225 4.225 10 C -0.095 4.095 11 C -0.167 4.167 12 C 0.122 3.878 13 C -0.464 4.464 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.795 5.795 17 Si 0.908 3.092 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.275 1.275 21 C -0.239 4.239 22 N -0.204 5.204 23 N -0.070 5.070 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.206 0.794 28 H 0.408 0.592 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.279 0.721 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.812 -4.769 -2.371 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.153 5.153 3 C -0.066 4.066 4 C -0.232 4.232 5 C 0.379 3.621 6 O -0.396 6.396 7 N -0.291 5.291 8 C 0.061 3.939 9 C -0.246 4.246 10 C -0.114 4.114 11 C -0.186 4.186 12 C 0.119 3.881 13 C -0.494 4.494 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.420 5.420 17 Si 0.732 3.268 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.261 4.261 22 N -0.078 5.078 23 N -0.050 5.050 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.223 0.777 28 H 0.243 0.757 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.818 -5.212 -2.322 17.759 hybrid contribution 0.464 0.475 0.390 0.771 sum -16.353 -4.736 -1.932 17.134 Atomic orbital electron populations 1.22169 0.72655 1.05685 1.04719 1.50360 1.09054 1.05772 1.50108 1.23384 0.90124 0.94979 0.98099 1.21646 0.94865 0.90266 1.16420 1.16758 0.81665 0.86444 0.77228 1.90832 1.86254 1.12815 1.49716 1.43236 1.04439 1.10693 1.70766 1.17427 0.84705 0.93456 0.98356 1.20298 0.98809 0.98472 1.07065 1.20573 0.93492 0.97767 0.99602 1.21382 0.97422 1.00061 0.99771 1.17375 0.91069 0.90565 0.89120 1.19550 1.01283 0.95079 1.33448 0.90404 1.25887 1.00546 0.94443 0.93276 1.69846 1.35396 1.01416 1.35366 0.86277 0.81828 0.80168 0.78512 1.18436 1.19758 1.20091 1.20736 0.92876 1.04919 1.07582 1.74637 1.12775 1.10486 1.09881 1.81976 0.93538 1.06488 1.23035 0.89267 0.88420 0.88168 0.77717 0.75666 0.88116 0.88994 0.86275 0.90990 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 11.51 59.84 0.69 1.03 16 2 N -0.37 -3.57 4.03 -67.85 -0.27 -3.85 16 3 C 0.09 1.01 11.31 -16.82 -0.19 0.82 16 4 C -0.09 -1.40 6.99 -83.55 -0.58 -1.98 16 5 C 0.59 11.16 7.54 -12.49 -0.09 11.07 16 6 O -0.52 -11.13 14.61 5.27 0.08 -11.05 16 7 N -0.65 -12.75 5.33 -10.86 -0.06 -12.81 16 8 C 0.15 3.57 6.25 -83.78 -0.52 3.05 16 9 C -0.23 -5.45 8.66 -39.09 -0.34 -5.79 16 10 C -0.10 -2.34 10.02 -39.69 -0.40 -2.74 16 11 C -0.17 -4.43 8.69 -38.84 -0.34 -4.76 16 12 C 0.12 3.29 5.57 -106.85 -0.59 2.69 16 13 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 14 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 15 C 0.08 1.92 5.16 -17.35 -0.09 1.83 16 16 N -0.79 -20.85 10.94 55.55 0.61 -20.24 16 17 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.24 -5.97 9.70 -38.68 -0.38 -6.34 16 22 N -0.20 -3.12 12.04 32.84 0.40 -2.73 16 23 N -0.07 -0.94 13.78 60.35 0.83 -0.10 16 24 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.41 7.07 8.51 -40.82 -0.35 6.72 16 29 H 0.10 2.37 6.47 -52.49 -0.34 2.03 16 30 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 33 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -32.89 298.04 -5.23 -38.12 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -3.10 Total: 8.23 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -3.18 Total: -13.86 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 1.50 Total: -39.73 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.89 -5.23 -38.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.521 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds