Wall clock time and date at job start Mon Mar 30 2020 01:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34825 * 126.59638 * 2 1 4 4 C 1.36612 * 106.83687 * 180.26349 * 3 2 1 5 5 C 1.47501 * 125.77405 * 180.02562 * 4 3 2 6 6 O 1.21608 * 119.99445 * 359.94769 * 5 4 3 7 7 N 1.34771 * 120.00092 * 179.97438 * 5 4 3 8 8 C 1.39871 * 119.99811 * 174.89305 * 7 5 4 9 9 C 1.39312 * 119.95018 * 325.51748 * 8 7 5 10 10 C 1.38483 * 120.42453 * 179.76353 * 9 8 7 11 11 C 1.37688 * 120.32645 * 0.51410 * 10 9 8 12 12 C 1.40742 * 119.88268 * 359.74581 * 11 10 9 13 13 C 1.41418 * 120.20402 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99735 * 205.16543 * 13 12 11 15 15 C 1.39927 * 120.00190 * 25.17067 * 13 12 11 16 16 N 1.30832 * 120.00077 * 16.80399 * 15 13 12 17 17 Si 1.86796 * 120.00038 * 196.81171 * 15 13 12 18 18 H 1.48498 * 109.47012 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47542 * 119.99715 * 17 15 13 20 20 H 1.48511 * 109.46974 * 239.99663 * 17 15 13 21 21 C 1.38254 * 119.94801 * 145.79402 * 8 7 5 22 22 N 1.34404 * 108.45627 * 0.02562 * 4 3 2 23 23 N 1.28759 * 109.52608 * 0.02562 * 22 4 3 24 24 H 1.08997 * 109.46838 * 269.71216 * 1 2 3 25 25 H 1.09004 * 109.47014 * 29.70620 * 1 2 3 26 26 H 1.08997 * 109.47182 * 149.70410 * 1 2 3 27 27 H 1.08001 * 126.58119 * 0.24716 * 3 2 1 28 28 H 0.97003 * 120.00223 * 354.89870 * 7 5 4 29 29 H 1.07995 * 119.78532 * 0.02562 * 9 8 7 30 30 H 1.08000 * 119.83312 * 180.23092 * 10 9 8 31 31 H 1.07999 * 120.05312 * 179.76281 * 11 10 9 32 32 H 0.97005 * 120.00026 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.16425 * 359.95770 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5544 0.6206 -0.0060 5 6 4.7705 1.4553 -0.0077 6 8 4.6757 2.6677 -0.0045 7 7 5.9866 0.8745 -0.0133 8 6 7.1373 1.6620 -0.1227 9 6 7.1169 2.8193 -0.8980 10 6 8.2491 3.6089 -1.0092 11 6 9.4114 3.2528 -0.3627 12 6 9.4485 2.0835 0.4198 13 6 10.6384 1.7115 1.0872 14 1 10.8171 0.6757 1.3355 15 6 11.5843 2.6854 1.4261 16 7 11.2475 3.9497 1.4338 17 14 13.3278 2.1806 1.8673 18 1 13.4513 0.7031 1.7841 19 1 14.2808 2.8116 0.9192 20 1 13.6372 2.6258 3.2499 21 6 8.2948 1.2878 0.5341 22 7 3.5238 -0.7231 -0.0102 23 7 2.3008 -1.1257 -0.0076 24 1 -0.3633 -0.0052 1.0276 25 1 -0.3633 0.8926 -0.5093 26 1 -0.3633 -0.8873 -0.5184 27 1 1.9562 2.1162 0.0037 28 1 6.0638 -0.0898 0.0584 29 1 6.2111 3.1047 -1.4121 30 1 8.2215 4.5061 -1.6098 31 1 10.2929 3.8698 -0.4556 32 1 11.9033 4.6249 1.6684 33 1 8.3129 0.3888 1.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313408859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:15 Heat of formation + Delta-G solvation = 62.553685 kcal Electronic energy + Delta-G solvation = -19291.836110 eV Core-core repulsion = 16125.731576 eV Total energy + Delta-G solvation = -3166.104535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.26190 -41.02549 -38.93879 -36.20400 -35.63781 -34.80527 -32.18588 -31.75463 -30.10868 -28.56476 -27.17768 -25.12020 -23.26542 -22.96634 -22.60705 -21.29739 -19.46423 -19.13970 -17.46547 -17.30273 -17.15384 -16.82394 -16.52039 -15.86874 -15.66486 -15.53129 -14.89400 -14.61918 -14.15531 -14.02965 -13.97116 -13.53346 -13.16735 -12.98231 -12.89144 -12.73063 -12.31717 -12.27358 -11.93988 -11.45931 -11.34532 -11.23557 -11.06524 -10.73713 -10.39778 -9.40802 -8.77650 -8.59134 -6.34460 0.09970 0.44182 0.98057 1.07908 1.16579 1.41512 1.53502 1.57184 2.12101 2.21711 2.25153 2.77332 3.13004 3.46975 3.73143 3.86593 3.93349 4.39139 4.40203 4.49153 4.66986 4.69522 4.76169 5.01363 5.03662 5.11752 5.20599 5.34820 5.43616 5.73543 5.83649 6.08497 6.11263 6.26763 6.53349 6.69484 6.85697 6.94227 6.98237 7.16356 8.36460 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044383 B = 0.003493 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.714029 B = 8013.775419 C = 8423.076314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.349 5.349 3 C 0.116 3.884 4 C -0.124 4.124 5 C 0.599 3.401 6 O -0.551 6.551 7 N -0.650 5.650 8 C 0.161 3.839 9 C -0.234 4.234 10 C -0.095 4.095 11 C -0.193 4.193 12 C 0.096 3.904 13 C -0.497 4.497 14 H 0.078 0.922 15 C 0.034 3.966 16 N -0.826 5.826 17 Si 0.985 3.015 18 H -0.257 1.257 19 H -0.264 1.264 20 H -0.267 1.267 21 C -0.255 4.255 22 N -0.228 5.228 23 N -0.087 5.087 24 H 0.109 0.891 25 H 0.131 0.869 26 H 0.111 0.889 27 H 0.241 0.759 28 H 0.418 0.582 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.288 0.712 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 -5.028 -2.231 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.134 5.134 3 C -0.043 4.043 4 C -0.264 4.264 5 C 0.386 3.614 6 O -0.427 6.427 7 N -0.293 5.293 8 C 0.068 3.932 9 C -0.256 4.256 10 C -0.113 4.113 11 C -0.213 4.213 12 C 0.093 3.907 13 C -0.526 4.526 14 H 0.097 0.903 15 C -0.180 4.180 16 N -0.451 5.451 17 Si 0.806 3.194 18 H -0.181 1.181 19 H -0.188 1.188 20 H -0.192 1.192 21 C -0.276 4.276 22 N -0.101 5.101 23 N -0.068 5.068 24 H 0.127 0.873 25 H 0.149 0.851 26 H 0.129 0.871 27 H 0.257 0.743 28 H 0.255 0.745 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.594 -5.514 -2.188 19.518 hybrid contribution 0.733 0.556 0.340 0.981 sum -17.861 -4.958 -1.848 18.628 Atomic orbital electron populations 1.22770 0.68965 1.07967 1.06736 1.50745 1.10814 1.04345 1.47482 1.23829 0.88731 0.96478 0.95226 1.21261 0.94699 0.90327 1.20133 1.17158 0.82126 0.86470 0.75677 1.90801 1.86787 1.14185 1.50968 1.43208 1.03984 1.10960 1.71160 1.17476 0.85553 0.93304 0.96862 1.20464 0.98868 0.98822 1.07402 1.20822 0.92954 0.98453 0.99110 1.21336 0.97845 1.00611 1.01483 1.17743 0.92080 0.91285 0.89605 1.19828 1.02418 0.95613 1.34742 0.90341 1.26787 1.04568 0.94104 0.92581 1.69898 1.37145 1.02562 1.35539 0.85116 0.75951 0.79818 0.78530 1.18076 1.18819 1.19190 1.20874 0.93103 1.05315 1.08355 1.74608 1.14049 1.10704 1.10771 1.81882 0.93397 1.07993 1.23561 0.87266 0.85091 0.87068 0.74319 0.74489 0.87388 0.86765 0.87561 0.90096 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.51 127.77 1.47 1.74 16 2 N -0.35 -5.70 4.03 -368.58 -1.49 -7.19 16 3 C 0.12 2.24 11.31 83.85 0.95 3.19 16 4 C -0.12 -3.62 6.99 40.81 0.29 -3.33 16 5 C 0.60 22.26 7.54 86.69 0.65 22.91 16 6 O -0.55 -23.23 14.61 -4.05 -0.06 -23.29 16 7 N -0.65 -25.71 5.33 -306.52 -1.63 -27.34 16 8 C 0.16 7.67 6.25 38.12 0.24 7.90 16 9 C -0.23 -11.44 8.66 22.59 0.20 -11.24 16 10 C -0.09 -4.72 10.02 22.20 0.22 -4.49 16 11 C -0.19 -10.57 8.69 22.75 0.20 -10.38 16 12 C 0.10 5.35 5.57 -21.31 -0.12 5.23 16 13 C -0.50 -27.25 9.05 23.46 0.21 -27.03 16 14 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 15 C 0.03 1.76 5.16 85.25 0.44 2.20 16 16 N -0.83 -44.06 10.94 21.82 0.24 -43.82 16 17 Si 0.99 38.66 29.59 68.60 2.03 40.69 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 21 C -0.25 -13.04 9.70 22.85 0.22 -12.82 16 22 N -0.23 -6.80 12.04 -50.00 -0.60 -7.40 16 23 N -0.09 -2.20 13.78 37.02 0.51 -1.69 16 24 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.13 -0.31 8.14 -2.38 -0.02 -0.33 16 26 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.24 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.42 14.66 8.51 -92.71 -0.79 13.87 16 29 H 0.11 5.07 6.47 -2.91 -0.02 5.05 16 30 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 31 H 0.11 6.00 6.17 -2.91 -0.02 5.98 16 32 H 0.29 13.82 8.30 -92.70 -0.77 13.05 16 33 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -73.36 298.04 4.34 -69.02 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.37 Total: 27.13 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.97 Total: -26.12 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.97 Total: -87.44 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.06 Total: -23.29 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -73.36 4.34 -69.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.575 kcal (2) G-P(sol) polarization free energy of solvation -73.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds