Wall clock time and date at job start Mon Mar 30 2020 01:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28516 * 124.43651 * 2 1 4 4 C 1.31134 * 109.05903 * 179.97438 * 3 2 1 5 5 C 1.40937 * 105.77436 * 0.02562 * 4 3 2 6 6 C 1.47767 * 127.24037 * 179.97438 * 5 4 3 7 7 O 1.21575 * 119.99824 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00362 * 179.97438 * 6 5 4 9 9 C 1.39868 * 119.99874 * 185.09063 * 8 6 5 10 10 C 1.39308 * 119.94928 * 33.31592 * 9 8 6 11 11 C 1.38483 * 120.42399 * 180.27557 * 10 9 8 12 12 C 1.37688 * 120.32346 * 359.44611 * 11 10 9 13 13 C 1.40749 * 119.89054 * 0.27652 * 12 11 10 14 14 C 1.41398 * 120.21145 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00577 * 29.19473 * 14 13 12 16 16 C 1.39938 * 119.99885 * 209.20174 * 14 13 12 17 17 N 1.30828 * 120.00025 * 15.61221 * 16 14 13 18 18 Si 1.86797 * 119.99726 * 195.61375 * 16 14 13 19 19 H 1.48509 * 109.47135 * 90.00104 * 18 16 14 20 20 H 1.48501 * 109.46994 * 209.99719 * 18 16 14 21 21 H 1.48500 * 109.47377 * 329.99883 * 18 16 14 22 22 C 1.38259 * 119.94683 * 213.03624 * 9 8 6 23 23 N 1.28591 * 124.44358 * 180.22960 * 2 1 3 24 24 H 1.09003 * 109.47124 * 90.02863 * 1 2 3 25 25 H 1.08999 * 109.46849 * 210.02376 * 1 2 3 26 26 H 1.08996 * 109.47305 * 330.02107 * 1 2 3 27 27 H 1.07999 * 127.11245 * 179.97438 * 4 3 2 28 28 H 0.96997 * 119.99473 * 5.08829 * 8 6 5 29 29 H 1.08000 * 119.79064 * 0.02562 * 10 9 8 30 30 H 1.07997 * 119.84091 * 179.72429 * 11 10 9 31 31 H 1.08004 * 120.05767 * 180.25140 * 12 11 10 32 32 H 0.96998 * 119.99413 * 180.02562 * 17 16 14 33 33 H 1.08006 * 120.16041 * 0.03277 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1918 1.0599 0.0000 4 6 3.4562 0.7122 0.0006 5 6 3.4660 -0.6971 0.0003 6 6 4.6485 -1.5832 0.0002 7 8 5.7663 -1.1051 -0.0001 8 7 4.4880 -2.9214 0.0005 9 6 5.6027 -3.7594 0.1079 10 6 6.7015 -3.3615 0.8661 11 6 7.8126 -4.1809 0.9745 12 6 7.8386 -5.4040 0.3426 13 6 6.7335 -5.8220 -0.4222 14 6 6.7532 -7.0764 -1.0744 15 1 7.3270 -7.8920 -0.6595 16 6 6.0293 -7.2612 -2.2577 17 7 5.5901 -6.2249 -2.9245 18 14 5.6900 -8.9877 -2.8849 19 1 4.4083 -9.4778 -2.3170 20 1 5.5988 -8.9669 -4.3670 21 1 6.7930 -9.8910 -2.4695 22 6 5.6099 -4.9840 -0.5340 23 7 2.1924 -1.0605 -0.0042 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8901 0.5135 27 1 4.3129 1.3698 0.0003 28 1 3.5994 -3.3032 -0.0738 29 1 6.6884 -2.4060 1.3694 30 1 8.6610 -3.8611 1.5611 31 1 8.7057 -6.0414 0.4334 32 1 5.0880 -6.3531 -3.7445 33 1 4.7569 -5.2952 -1.1188 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313494505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:40 Heat of formation + Delta-G solvation = 77.077021 kcal Electronic energy + Delta-G solvation = -19562.926099 eV Core-core repulsion = 16397.451343 eV Total energy + Delta-G solvation = -3165.474756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.75714 -41.16876 -38.97858 -36.07196 -35.18207 -34.78006 -33.77545 -31.49222 -30.47043 -28.81686 -27.16830 -25.50911 -23.22898 -23.09356 -22.66105 -21.23401 -19.26873 -19.08885 -18.08524 -18.00636 -17.44784 -16.71675 -16.55079 -16.02487 -15.85874 -15.52268 -14.91663 -14.57748 -14.18677 -13.87910 -13.67447 -13.62340 -13.09248 -13.00749 -12.79695 -12.63414 -12.25196 -12.16378 -11.91097 -11.73301 -11.59279 -11.29481 -11.10255 -10.76421 -10.51612 -9.30281 -8.82102 -8.57930 -6.35974 0.05678 0.75317 0.99173 1.06854 1.23342 1.41286 1.53434 1.54509 2.05137 2.14276 2.24131 2.77995 2.81127 3.66738 3.73153 3.93190 4.27832 4.30579 4.43441 4.47307 4.64368 4.72221 4.84071 4.88160 5.06564 5.14187 5.18975 5.34046 5.49212 5.74721 5.82202 6.01615 6.08061 6.30364 6.48356 6.67994 6.92970 6.95453 6.99588 7.10394 8.38151 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.004544 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.196862 B = 6160.796609 C = 7175.803575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.131 5.131 3 N -0.293 5.293 4 C 0.035 3.965 5 C -0.065 4.065 6 C 0.604 3.396 7 O -0.542 6.542 8 N -0.645 5.645 9 C 0.146 3.854 10 C -0.234 4.234 11 C -0.083 4.083 12 C -0.240 4.240 13 C 0.096 3.904 14 C -0.501 4.501 15 H 0.080 0.920 16 C 0.037 3.963 17 N -0.832 5.832 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.258 1.258 22 C -0.195 4.195 23 N -0.254 5.254 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.226 0.774 28 H 0.416 0.584 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.286 0.714 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 9.040 3.585 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.036 5.036 3 N -0.134 5.134 4 C -0.147 4.147 5 C -0.226 4.226 6 C 0.389 3.611 7 O -0.417 6.417 8 N -0.288 5.288 9 C 0.053 3.947 10 C -0.255 4.255 11 C -0.101 4.101 12 C -0.260 4.260 13 C 0.093 3.907 14 C -0.531 4.531 15 H 0.098 0.902 16 C -0.177 4.177 17 N -0.458 5.458 18 Si 0.804 3.196 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.182 1.182 22 C -0.217 4.217 23 N -0.105 5.105 24 H 0.131 0.869 25 H 0.141 0.859 26 H 0.148 0.852 27 H 0.242 0.758 28 H 0.253 0.747 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.388 9.491 3.380 16.755 hybrid contribution 0.484 -0.816 -0.549 1.096 sum -12.904 8.675 2.831 15.805 Atomic orbital electron populations 1.22849 0.66558 1.08291 1.07325 1.48690 1.10791 0.98438 1.45710 1.74017 1.03531 1.15654 1.20157 1.25149 0.95187 0.92964 1.01434 1.22701 0.90830 0.95221 1.13802 1.16959 0.86635 0.81387 0.76100 1.90791 1.25005 1.75543 1.50377 1.43206 1.09835 1.05006 1.70796 1.17679 0.88373 0.91028 0.97607 1.20551 0.96012 1.01649 1.07299 1.20768 0.97123 0.93752 0.98491 1.21292 0.98744 0.98147 1.07829 1.17740 0.89996 0.92961 0.90032 1.19788 1.28140 0.97603 1.07571 0.90219 1.26726 0.92537 1.02676 0.95798 1.69892 1.28288 1.33635 1.14014 0.85191 0.79799 0.77115 0.77504 1.18527 1.19632 1.18181 1.20912 1.00194 0.95856 1.04722 1.74366 1.02794 1.16581 1.16742 0.86875 0.85895 0.85183 0.75767 0.74699 0.87291 0.85708 0.87687 0.90333 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.55 127.77 1.48 2.24 16 2 N -0.13 -2.83 4.35 -206.53 -0.90 -3.73 16 3 N -0.29 -7.00 12.01 -56.15 -0.67 -7.67 16 4 C 0.03 0.93 12.04 85.46 1.03 1.96 16 5 C -0.06 -2.05 7.21 42.23 0.30 -1.75 16 6 C 0.60 23.71 7.56 86.76 0.66 24.37 16 7 O -0.54 -24.25 14.62 -3.95 -0.06 -24.31 16 8 N -0.64 -26.42 5.33 -306.29 -1.63 -28.05 16 9 C 0.15 7.09 6.27 38.12 0.24 7.33 16 10 C -0.23 -11.23 8.66 22.59 0.20 -11.03 16 11 C -0.08 -3.84 10.02 22.20 0.22 -3.62 16 12 C -0.24 -12.08 9.79 22.75 0.22 -11.85 16 13 C 0.10 5.23 5.52 -21.31 -0.12 5.11 16 14 C -0.50 -27.04 9.04 23.46 0.21 -26.83 16 15 H 0.08 4.12 7.89 -2.91 -0.02 4.10 16 16 C 0.04 1.86 5.15 85.25 0.44 2.30 16 17 N -0.83 -44.04 11.15 21.82 0.24 -43.79 16 18 Si 0.98 38.14 29.59 68.60 2.03 40.17 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 22 C -0.20 -10.35 8.57 22.85 0.20 -10.15 16 23 N -0.25 -7.02 11.85 -48.18 -0.57 -7.59 16 24 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.23 4.89 8.06 -2.91 -0.02 4.86 16 28 H 0.42 15.09 8.59 -92.71 -0.80 14.29 16 29 H 0.11 5.08 6.39 -2.91 -0.02 5.06 16 30 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 32 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 33 H 0.11 5.78 6.44 -2.91 -0.02 5.76 16 Total: -1.00 -69.58 297.78 3.88 -65.69 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.37 Total: 31.21 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 5.07 Total: -21.93 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -3.53 Total: -90.84 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -69.58 3.88 -65.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313494505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.771 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds