Wall clock time and date at job start Mon Mar 30 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48504 * 109.47177 * 85.83350 * 3 2 1 5 5 H 1.48506 * 109.46904 * 205.82891 * 3 2 1 6 6 H 1.48497 * 109.47238 * 325.83108 * 3 2 1 7 7 C 1.38976 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00144 * 21.21446 * 7 2 1 9 9 N 1.36929 * 119.99971 * 201.20396 * 7 2 1 10 10 C 1.34782 * 119.99833 * 41.30814 * 9 7 2 11 11 O 1.21721 * 120.00145 * 356.50332 * 10 9 7 12 12 C 1.46707 * 119.99977 * 176.50095 * 10 9 7 13 13 C 1.40485 * 126.55330 * 327.16440 * 12 10 9 14 14 N 1.30954 * 108.76736 * 179.81851 * 13 12 10 15 15 N 1.39719 * 109.51019 * 0.44941 * 14 13 12 16 16 C 1.36367 * 133.18588 * 179.71705 * 15 14 13 17 17 C 1.35313 * 119.79992 * 179.97438 * 16 15 14 18 18 N 1.33235 * 121.26555 * 0.02562 * 17 16 15 19 19 C 1.31433 * 121.08845 * 359.97058 * 18 17 16 20 20 C 1.36851 * 107.97651 * 359.71770 * 15 14 13 21 21 C 1.46498 * 120.00235 * 221.30050 * 9 7 2 22 22 C 1.52997 * 117.49860 * 2.97546 * 21 9 7 23 23 C 1.52995 * 117.50234 * 294.34635 * 21 9 7 24 24 H 0.96997 * 119.99781 * 359.97438 * 1 2 3 25 25 H 1.08003 * 125.61457 * 359.97438 * 13 12 10 26 26 H 1.07995 * 120.09700 * 359.97438 * 16 15 14 27 27 H 1.08000 * 119.36326 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.18286 * 180.02562 * 19 18 17 29 29 H 1.09002 * 115.54948 * 148.67438 * 21 9 7 30 30 H 1.08996 * 117.50164 * 359.97438 * 22 21 9 31 31 H 1.09001 * 117.50195 * 145.01787 * 22 21 9 32 32 H 1.09001 * 117.50218 * 214.97462 * 23 21 9 33 33 H 1.08993 * 117.49841 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4076 2.0973 1.3964 5 1 3.5871 1.4163 -0.6100 6 1 1.4925 2.6256 -0.7863 7 6 2.0091 -1.2036 0.0005 8 1 1.5239 -2.1074 -0.3375 9 7 3.3088 -1.2435 0.4295 10 6 3.6814 -0.5402 1.5171 11 8 2.8783 0.1803 2.0806 12 6 5.0550 -0.6430 2.0220 13 6 5.8814 -1.7781 1.9738 14 7 7.0351 -1.4828 2.5186 15 7 7.0186 -0.1559 2.9559 16 6 7.9393 0.6322 3.5810 17 6 7.6304 1.9134 3.8877 18 7 6.4374 2.4271 3.5911 19 6 5.5185 1.7056 2.9889 20 6 5.7938 0.3737 2.6522 21 6 4.2944 -2.0509 -0.2937 22 6 3.8258 -2.7706 -1.5600 23 6 4.1068 -3.5693 -0.2855 24 1 -0.4850 0.8400 0.0004 25 1 5.6108 -2.7357 1.5539 26 1 8.9120 0.2349 3.8305 27 1 8.3648 2.5312 4.3831 28 1 4.5564 2.1369 2.7550 29 1 5.3155 -1.6699 -0.2797 30 1 2.7841 -2.6437 -1.8547 31 1 4.5386 -2.8631 -2.3794 32 1 5.0044 -4.1873 -0.2666 33 1 3.2498 -3.9675 0.2576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329610192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:32 Heat of formation + Delta-G solvation = 141.019119 kcal Electronic energy + Delta-G solvation = -20915.380762 eV Core-core repulsion = 17752.678744 eV Total energy + Delta-G solvation = -3162.702018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.32963 -39.17498 -38.00482 -36.45724 -33.56716 -32.92703 -31.49943 -31.21325 -29.26202 -25.48270 -24.74536 -23.19850 -22.56431 -21.90146 -20.99647 -19.65152 -18.39002 -17.27795 -16.96993 -16.27041 -15.92199 -15.42332 -15.19186 -14.67014 -14.61613 -13.67347 -13.64509 -13.28374 -13.14243 -12.90022 -12.84187 -12.42895 -11.55790 -11.15066 -11.04901 -11.02489 -10.86865 -10.37186 -10.05877 -10.00826 -9.95677 -9.82697 -9.68128 -8.63041 -8.51459 -7.67921 -7.53664 -6.23098 -3.97858 0.45333 0.91065 2.01876 2.41299 3.28268 3.46578 3.49478 3.64162 3.91618 4.05052 4.20539 4.33630 4.38391 4.46824 4.61030 4.91478 4.97717 5.13852 5.26642 5.37668 5.41176 5.48322 5.53116 5.67759 5.81243 6.05722 6.17063 6.23138 6.40599 6.54128 6.58322 6.79842 7.38283 7.61632 7.79658 7.92761 8.72149 8.84857 9.37994 9.77021 10.80940 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.008493 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.984473 B = 3295.911302 C = 4418.548021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.095 3.905 3 Si 0.913 3.087 4 H -0.249 1.249 5 H -0.282 1.282 6 H -0.309 1.309 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.421 5.421 10 C 0.518 3.482 11 O -0.541 6.541 12 C -0.226 4.226 13 C 0.101 3.899 14 N -0.310 5.310 15 N -0.256 5.256 16 C 0.058 3.942 17 C 0.019 3.981 18 N -0.457 5.457 19 C 0.177 3.823 20 C 0.068 3.932 21 C 0.059 3.941 22 C -0.168 4.168 23 C -0.204 4.204 24 H 0.274 0.726 25 H 0.206 0.794 26 H 0.177 0.823 27 H 0.181 0.819 28 H 0.190 0.810 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.321 -1.080 2.905 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.115 4.115 3 Si 0.744 3.256 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.239 1.239 7 C -0.474 4.474 8 H 0.116 0.884 9 N -0.140 5.140 10 C 0.309 3.691 11 O -0.425 6.425 12 C -0.245 4.245 13 C -0.076 4.076 14 N -0.134 5.134 15 N -0.024 5.024 16 C -0.070 4.070 17 C -0.122 4.122 18 N -0.169 5.169 19 C -0.003 4.003 20 C -0.054 4.054 21 C -0.047 4.047 22 C -0.206 4.206 23 C -0.243 4.243 24 H 0.083 0.917 25 H 0.222 0.778 26 H 0.194 0.806 27 H 0.198 0.802 28 H 0.207 0.793 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.910 -0.333 3.750 16.350 hybrid contribution -0.069 0.022 -0.503 0.509 sum 15.841 -0.310 3.246 16.174 Atomic orbital electron populations 1.69757 1.06917 1.28411 1.44231 1.25310 0.94891 0.99567 0.91781 0.86363 0.79063 0.81982 0.78211 1.17533 1.20750 1.23921 1.18681 0.84394 0.96400 1.47956 0.88445 1.42894 1.08187 1.41436 1.21469 1.16868 0.85188 0.85579 0.81485 1.90651 1.52320 1.40475 1.59033 1.20360 0.98481 0.92907 1.12732 1.24480 0.89061 0.99725 0.94315 1.77563 1.22829 0.89279 1.23772 1.46137 1.10010 1.09909 1.36389 1.22509 0.95540 0.91331 0.97642 1.22328 0.95704 0.91880 1.02285 1.68255 1.01219 1.36675 1.10704 1.23248 0.99294 0.86895 0.90866 1.20382 0.87383 0.96261 1.01377 1.21895 0.93673 0.90094 0.99024 1.23176 1.03908 1.02742 0.90761 1.23403 1.03289 0.94659 1.02959 0.91667 0.77754 0.80629 0.80166 0.79341 0.87332 0.86821 0.89313 0.89208 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 13.96 55.50 0.77 -24.86 16 2 C 0.09 2.72 4.81 -17.45 -0.08 2.64 16 3 Si 0.91 23.87 24.84 -169.99 -4.22 19.65 16 4 H -0.25 -6.61 6.15 56.52 0.35 -6.26 16 5 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.31 -7.98 7.11 56.52 0.40 -7.57 16 7 C -0.35 -9.46 8.55 -15.00 -0.13 -9.59 16 8 H 0.10 2.73 7.25 -52.49 -0.38 2.34 16 9 N -0.42 -9.91 2.51 -109.19 -0.27 -10.19 16 10 C 0.52 12.41 5.96 -12.84 -0.08 12.34 16 11 O -0.54 -14.75 11.73 5.17 0.06 -14.69 16 12 C -0.23 -4.50 5.49 -104.74 -0.58 -5.08 16 13 C 0.10 1.69 9.73 -17.08 -0.17 1.52 16 14 N -0.31 -5.00 12.60 30.77 0.39 -4.62 16 15 N -0.26 -4.04 3.91 -10.49 -0.04 -4.08 16 16 C 0.06 0.67 11.25 -16.58 -0.19 0.49 16 17 C 0.02 0.22 11.07 -17.99 -0.20 0.02 16 18 N -0.46 -6.86 10.44 -13.26 -0.14 -7.00 16 19 C 0.18 3.08 11.17 -17.02 -0.19 2.89 16 20 C 0.07 1.24 6.77 -84.04 -0.57 0.67 16 21 C 0.06 1.08 4.48 -67.94 -0.30 0.77 16 22 C -0.17 -2.77 9.79 -26.73 -0.26 -3.03 16 23 C -0.20 -3.11 9.37 -26.73 -0.25 -3.36 16 24 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 25 H 0.21 2.90 5.91 -52.48 -0.31 2.59 16 26 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 27 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.19 3.45 7.82 -52.49 -0.41 3.04 16 29 H 0.11 1.82 6.39 -51.93 -0.33 1.49 16 30 H 0.11 2.14 6.65 -51.93 -0.35 1.79 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 281.64 15.07 4.24 4.24 Total: -1.00 -33.64 281.64 -5.28 -38.92 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.08 Total: 2.35 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.99 Total: 0.27 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.71 Total: -50.74 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.06 Total: -14.69 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -4.22 Total: 19.65 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.64 -5.28 -38.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329610192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.936 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds