Wall clock time and date at job start Mon Mar 30 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48504 * 109.47177 * 85.83350 * 3 2 1 5 5 H 1.48506 * 109.46904 * 205.82891 * 3 2 1 6 6 H 1.48497 * 109.47238 * 325.83108 * 3 2 1 7 7 C 1.38976 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00144 * 21.21446 * 7 2 1 9 9 N 1.36929 * 119.99971 * 201.20396 * 7 2 1 10 10 C 1.34782 * 119.99833 * 41.30814 * 9 7 2 11 11 O 1.21721 * 120.00145 * 356.50332 * 10 9 7 12 12 C 1.46707 * 119.99977 * 176.50095 * 10 9 7 13 13 C 1.40485 * 126.55330 * 327.16440 * 12 10 9 14 14 N 1.30954 * 108.76736 * 179.81851 * 13 12 10 15 15 N 1.39719 * 109.51019 * 0.44941 * 14 13 12 16 16 C 1.36367 * 133.18588 * 179.71705 * 15 14 13 17 17 C 1.35313 * 119.79992 * 179.97438 * 16 15 14 18 18 N 1.33235 * 121.26555 * 0.02562 * 17 16 15 19 19 C 1.31433 * 121.08845 * 359.97058 * 18 17 16 20 20 C 1.36851 * 107.97651 * 359.71770 * 15 14 13 21 21 C 1.46498 * 120.00235 * 221.30050 * 9 7 2 22 22 C 1.52997 * 117.49860 * 2.97546 * 21 9 7 23 23 C 1.52995 * 117.50234 * 294.34635 * 21 9 7 24 24 H 0.96997 * 119.99781 * 359.97438 * 1 2 3 25 25 H 1.08003 * 125.61457 * 359.97438 * 13 12 10 26 26 H 1.07995 * 120.09700 * 359.97438 * 16 15 14 27 27 H 1.08000 * 119.36326 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.18286 * 180.02562 * 19 18 17 29 29 H 1.09002 * 115.54948 * 148.67438 * 21 9 7 30 30 H 1.08996 * 117.50164 * 359.97438 * 22 21 9 31 31 H 1.09001 * 117.50195 * 145.01787 * 22 21 9 32 32 H 1.09001 * 117.50218 * 214.97462 * 23 21 9 33 33 H 1.08993 * 117.49841 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4076 2.0973 1.3964 5 1 3.5871 1.4163 -0.6100 6 1 1.4925 2.6256 -0.7863 7 6 2.0091 -1.2036 0.0005 8 1 1.5239 -2.1074 -0.3375 9 7 3.3088 -1.2435 0.4295 10 6 3.6814 -0.5402 1.5171 11 8 2.8783 0.1803 2.0806 12 6 5.0550 -0.6430 2.0220 13 6 5.8814 -1.7781 1.9738 14 7 7.0351 -1.4828 2.5186 15 7 7.0186 -0.1559 2.9559 16 6 7.9393 0.6322 3.5810 17 6 7.6304 1.9134 3.8877 18 7 6.4374 2.4271 3.5911 19 6 5.5185 1.7056 2.9889 20 6 5.7938 0.3737 2.6522 21 6 4.2944 -2.0509 -0.2937 22 6 3.8258 -2.7706 -1.5600 23 6 4.1068 -3.5693 -0.2855 24 1 -0.4850 0.8400 0.0004 25 1 5.6108 -2.7357 1.5539 26 1 8.9120 0.2349 3.8305 27 1 8.3648 2.5312 4.3831 28 1 4.5564 2.1369 2.7550 29 1 5.3155 -1.6699 -0.2797 30 1 2.7841 -2.6437 -1.8547 31 1 4.5386 -2.8631 -2.3794 32 1 5.0044 -4.1873 -0.2666 33 1 3.2498 -3.9675 0.2576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329610192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:32 Heat of formation + Delta-G solvation = 116.369113 kcal Electronic energy + Delta-G solvation = -20916.449667 eV Core-core repulsion = 17752.678744 eV Total energy + Delta-G solvation = -3163.770923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.58184 -40.82325 -39.27335 -38.05582 -35.04490 -34.62766 -33.37844 -32.44473 -30.60613 -27.27722 -25.93237 -24.69181 -23.92276 -23.19129 -22.43957 -21.38075 -19.81457 -18.59358 -18.39869 -17.91120 -17.19481 -16.97059 -16.59035 -16.15013 -16.01188 -15.39226 -15.29072 -14.88098 -14.61789 -14.38227 -14.09950 -14.01329 -13.32448 -12.97955 -12.61083 -12.40241 -12.19232 -12.13453 -11.94107 -11.57217 -11.32109 -11.11988 -10.93664 -10.69099 -10.41635 -9.42180 -8.90892 -8.41318 -6.13133 -0.73454 -0.30001 0.85502 0.99448 1.32604 1.39994 1.51805 2.07775 2.34443 2.46364 2.60203 2.92129 3.00470 3.10552 3.22297 3.26043 3.70279 3.97677 3.99286 4.04748 4.12443 4.27114 4.35364 4.38066 4.49559 4.89044 4.95830 5.00571 5.09621 5.25329 5.38654 5.47113 5.70897 5.86826 6.13928 6.47444 6.76500 6.88988 7.34210 7.87792 8.66498 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.008493 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.984473 B = 3295.911302 C = 4418.548021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.048 3.952 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.308 1.308 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.438 5.438 10 C 0.521 3.479 11 O -0.588 6.588 12 C -0.279 4.279 13 C 0.124 3.876 14 N -0.310 5.310 15 N -0.250 5.250 16 C 0.077 3.923 17 C 0.025 3.975 18 N -0.449 5.449 19 C 0.134 3.866 20 C 0.068 3.932 21 C 0.034 3.966 22 C -0.169 4.169 23 C -0.175 4.175 24 H 0.273 0.727 25 H 0.227 0.773 26 H 0.231 0.769 27 H 0.236 0.764 28 H 0.163 0.837 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.448 -1.697 3.763 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.157 4.157 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.238 1.238 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.157 5.157 10 C 0.313 3.687 11 O -0.475 6.475 12 C -0.297 4.297 13 C -0.054 4.054 14 N -0.135 5.135 15 N -0.018 5.018 16 C -0.052 4.052 17 C -0.117 4.117 18 N -0.161 5.161 19 C -0.043 4.043 20 C -0.054 4.054 21 C -0.070 4.070 22 C -0.206 4.206 23 C -0.213 4.213 24 H 0.082 0.918 25 H 0.243 0.757 26 H 0.247 0.753 27 H 0.252 0.748 28 H 0.181 0.819 29 H 0.148 0.852 30 H 0.099 0.901 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.039 -0.989 4.567 21.552 hybrid contribution -1.342 0.230 -0.564 1.473 sum 19.697 -0.759 4.003 20.114 Atomic orbital electron populations 1.69838 1.07950 1.28695 1.47740 1.25904 0.95356 1.01985 0.92451 0.85605 0.78369 0.79845 0.77208 1.19115 1.20065 1.23752 1.18570 0.86469 0.95167 1.46321 0.90534 1.43000 1.07940 1.42590 1.22187 1.17481 0.86622 0.83824 0.80771 1.90595 1.54201 1.42409 1.60253 1.19877 0.97414 0.95440 1.16993 1.24666 0.88206 0.99424 0.93056 1.77570 1.22265 0.89254 1.24362 1.46517 1.09742 1.10032 1.35478 1.23614 0.96365 0.90855 0.94398 1.23315 0.94847 0.92530 1.01052 1.68226 1.02175 1.36887 1.08789 1.22833 0.99686 0.87322 0.94458 1.20336 0.88353 0.96227 1.00521 1.22168 0.93269 0.91326 1.00274 1.23229 1.02979 1.02554 0.91868 1.23458 1.04342 0.92716 1.00791 0.91811 0.75718 0.75302 0.74775 0.81937 0.85163 0.90127 0.85610 0.84340 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.22 13.96 21.67 0.30 -56.91 16 2 C 0.05 2.90 4.81 84.93 0.41 3.31 16 3 Si 0.96 51.98 24.84 68.60 1.70 53.68 16 4 H -0.26 -14.82 6.15 99.48 0.61 -14.21 16 5 H -0.28 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.31 -16.20 7.11 99.48 0.71 -15.49 16 7 C -0.34 -19.26 8.55 84.07 0.72 -18.54 16 8 H 0.08 4.56 7.25 -2.91 -0.02 4.54 16 9 N -0.44 -21.13 2.51 -617.57 -1.55 -22.67 16 10 C 0.52 25.70 5.96 86.45 0.52 26.22 16 11 O -0.59 -33.80 11.73 -4.42 -0.05 -33.85 16 12 C -0.28 -11.01 5.49 -19.94 -0.11 -11.12 16 13 C 0.12 3.81 9.73 85.37 0.83 4.64 16 14 N -0.31 -8.85 12.60 -56.55 -0.71 -9.57 16 15 N -0.25 -6.97 3.91 -187.09 -0.73 -7.71 16 16 C 0.08 1.32 11.25 83.31 0.94 2.26 16 17 C 0.03 0.43 11.07 83.80 0.93 1.36 16 18 N -0.45 -12.37 10.44 -195.88 -2.05 -14.42 16 19 C 0.13 4.67 11.17 85.21 0.95 5.62 16 20 C 0.07 2.43 6.77 39.39 0.27 2.70 16 21 C 0.03 1.20 4.48 44.99 0.20 1.40 16 22 C -0.17 -5.33 9.79 30.60 0.30 -5.03 16 23 C -0.17 -4.89 9.37 30.59 0.29 -4.61 16 24 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 25 H 0.23 5.66 5.91 -2.91 -0.02 5.64 16 26 H 0.23 1.54 8.06 -2.91 -0.02 1.52 16 27 H 0.24 1.46 8.06 -2.91 -0.02 1.43 16 28 H 0.16 6.41 7.82 -2.91 -0.02 6.39 16 29 H 0.13 4.04 6.39 -2.39 -0.02 4.02 16 30 H 0.08 3.11 6.65 -2.39 -0.02 3.10 16 31 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -80.47 281.64 4.21 -76.26 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.06 Total: 6.97 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.23 Total: 8.21 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -4.73 Total: -111.28 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.05 Total: -33.85 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 1.70 Total: 53.68 kcal Total: -80.47 4.21 -76.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329610192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.633 kcal (2) G-P(sol) polarization free energy of solvation -80.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds