Wall clock time and date at job start Mon Mar 30 2020 01:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46793 * 2 1 4 4 C 1.53001 * 109.47413 * 239.99977 * 2 1 3 5 5 N 1.46506 * 109.47244 * 119.99466 * 2 1 3 6 6 N 1.40584 * 127.38300 * 239.96125 * 5 2 1 7 7 N 1.28911 * 106.83071 * 180.02562 * 6 5 2 8 8 N 1.28429 * 110.33880 * 359.72433 * 7 6 5 9 9 C 1.31539 * 110.49686 * 0.45960 * 8 7 6 10 10 S 1.76208 * 126.44912 * 179.81684 * 9 8 7 11 11 C 1.80998 * 99.99889 * 359.68567 * 10 9 8 12 12 C 1.52996 * 109.47161 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47066 * 60.00373 * 12 11 10 14 14 O 1.42903 * 109.47446 * 300.00249 * 12 11 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.08997 * 109.47561 * 299.99906 * 1 2 3 24 24 H 1.09002 * 109.47605 * 60.00831 * 1 2 3 25 25 H 1.09007 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47119 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46799 * 299.99373 * 3 2 1 28 28 H 1.08999 * 109.47491 * 59.99618 * 3 2 1 29 29 H 1.09004 * 109.46397 * 299.99436 * 4 2 1 30 30 H 1.08999 * 109.47029 * 59.99735 * 4 2 1 31 31 H 1.09001 * 109.47034 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46826 * 60.00137 * 11 10 9 33 33 H 1.09000 * 109.47766 * 300.00468 * 11 10 9 34 34 H 0.96697 * 113.99557 * 300.00558 * 14 12 11 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1963 6 7 2.8300 -0.1621 2.2152 7 7 3.0193 -1.1082 3.0701 8 7 2.4071 -2.1744 2.6987 9 6 1.7850 -1.9744 1.5571 10 16 0.8230 -3.1534 0.6686 11 6 0.9886 -4.5842 1.7646 12 6 0.2117 -5.7661 1.1812 13 1 0.6113 -6.0137 0.1977 14 8 -1.1684 -5.4160 1.0602 15 6 0.3491 -6.9573 2.0941 16 1 0.9318 -6.8791 3.0000 17 6 -0.2744 -8.1453 1.7759 18 7 -0.9843 -8.2404 0.6729 19 14 -0.1104 -9.6194 2.9113 20 1 -0.6543 -9.2762 4.2498 21 1 -0.8684 -10.7652 2.3474 22 1 1.3222 -9.9891 3.0390 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1298 1.4426 -0.0005 27 1 1.6765 1.9563 -0.8901 28 1 1.6765 1.9565 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 0.5885 -4.3368 2.7480 33 1 2.0413 -4.8511 1.8573 34 1 -1.5901 -5.1833 1.8987 35 1 -1.4226 -9.0763 0.4488 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330726933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:01 Heat of formation + Delta-G solvation = 52.346668 kcal Electronic energy + Delta-G solvation = -18922.788949 eV Core-core repulsion = 15891.685757 eV Total energy + Delta-G solvation = -3031.103193 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.70624 -37.81788 -36.05352 -32.26943 -32.18246 -32.04359 -29.86466 -27.84546 -27.75131 -25.58266 -24.60385 -22.71349 -21.43617 -20.39054 -17.69879 -17.26850 -16.43464 -16.36717 -14.77504 -14.72719 -14.58419 -14.41573 -14.23420 -14.02920 -13.44630 -13.16305 -12.83552 -12.73989 -12.46720 -12.13275 -11.94480 -11.78558 -11.75137 -11.53104 -11.24354 -11.06197 -10.95424 -10.77828 -10.65709 -10.35586 -10.29462 -10.00344 -9.31505 -8.70193 -8.44611 -7.63070 -6.14508 -4.34341 1.06209 1.06724 2.13429 2.42496 2.47313 3.24893 3.29932 3.32944 4.03185 4.31041 4.35305 4.47127 4.79525 5.09579 5.13074 5.19824 5.20931 5.32463 5.36595 5.44778 5.46868 5.56424 5.72665 5.74513 5.88018 5.89322 5.98142 6.06165 6.26416 6.57019 7.41501 7.69808 7.93897 8.60914 8.66519 9.16302 9.41738 10.89551 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034106 B = 0.004557 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.778723 B = 6142.598740 C = 6691.806991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.172 3.828 3 C -0.145 4.145 4 C -0.169 4.169 5 N -0.361 5.361 6 N -0.097 5.097 7 N -0.042 5.042 8 N -0.338 5.338 9 C 0.218 3.782 10 S 0.033 5.967 11 C -0.127 4.127 12 C 0.245 3.755 13 H 0.068 0.932 14 O -0.560 6.560 15 C -0.570 4.570 16 H 0.062 0.938 17 C 0.082 3.918 18 N -0.857 5.857 19 Si 0.896 3.104 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.350 0.650 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 15.732 -4.823 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.089 3.911 3 C -0.202 4.202 4 C -0.228 4.228 5 N -0.161 5.161 6 N -0.084 5.084 7 N -0.038 5.038 8 N -0.194 5.194 9 C -0.165 4.165 10 S 0.260 5.740 11 C -0.276 4.276 12 C 0.185 3.815 13 H 0.086 0.914 14 O -0.363 6.363 15 C -0.610 4.610 16 H 0.080 0.920 17 C -0.125 4.125 18 N -0.492 5.492 19 Si 0.723 3.277 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.085 0.915 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.195 0.805 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.567 16.067 -5.517 17.181 hybrid contribution 0.285 -0.893 1.657 1.904 sum 2.852 15.174 -3.860 15.915 Atomic orbital electron populations 1.22365 0.91581 1.05006 1.03850 1.21119 0.95474 0.93753 0.80777 1.21968 1.02588 0.92180 1.03496 1.22365 1.02424 1.02507 0.95483 1.51921 1.36896 1.07786 1.19538 1.82316 1.11351 1.19280 0.95421 1.77817 1.13170 0.94503 1.18268 1.74994 1.14109 1.19930 1.10405 1.28248 1.00945 0.90518 0.96828 1.86113 1.55386 1.03371 1.29085 1.25151 1.06984 0.94634 1.00825 1.19259 0.78645 0.86406 0.97178 0.91423 1.86583 1.25549 1.89867 1.34304 1.21446 1.34908 0.95880 1.08774 0.92012 1.25019 0.94005 0.98516 0.94958 1.70059 1.29894 1.26220 1.23009 0.86614 0.78451 0.81692 0.80965 1.19951 1.21095 1.19953 0.91456 0.89337 0.89849 0.91136 0.90074 0.91125 0.89975 0.89310 0.91441 0.89146 0.88612 0.80536 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.52 37.15 0.32 -1.28 16 2 C 0.17 1.81 1.10 -131.82 -0.14 1.66 16 3 C -0.14 -1.22 8.07 37.16 0.30 -0.92 16 4 C -0.17 -1.58 8.52 37.16 0.32 -1.26 16 5 N -0.36 -5.30 3.51 -48.59 -0.17 -5.47 16 6 N -0.10 -1.61 13.08 60.35 0.79 -0.82 16 7 N -0.04 -0.78 13.38 60.35 0.81 0.02 16 8 N -0.34 -6.44 11.57 30.50 0.35 -6.08 16 9 C 0.22 3.66 7.65 -89.19 -0.68 2.98 16 10 S 0.03 0.53 17.74 -107.50 -1.91 -1.37 16 11 C -0.13 -2.47 4.87 37.16 0.18 -2.28 16 12 C 0.25 5.71 2.88 -27.88 -0.08 5.63 16 13 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 14 O -0.56 -13.10 12.31 -35.23 -0.43 -13.53 16 15 C -0.57 -14.75 8.76 -34.44 -0.30 -15.05 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 18 N -0.86 -24.01 12.83 55.43 0.71 -23.29 16 19 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.91 6.03 -51.93 -0.31 0.60 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.89 6.03 -51.93 -0.31 0.57 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 33 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 34 H 0.35 7.28 9.04 45.56 0.41 7.69 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -30.14 309.60 -4.38 -34.52 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.98 Total: 4.42 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.19 Total: -8.43 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 2.49 Total: -35.64 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.43 Total: -13.53 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -1.91 Total: -1.37 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.14 -4.38 -34.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330726933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.866 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds