Wall clock time and date at job start Mon Mar 30 2020 01:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46793 * 2 1 4 4 C 1.53001 * 109.47413 * 239.99977 * 2 1 3 5 5 N 1.46506 * 109.47244 * 119.99466 * 2 1 3 6 6 N 1.40584 * 127.38300 * 239.96125 * 5 2 1 7 7 N 1.28911 * 106.83071 * 180.02562 * 6 5 2 8 8 N 1.28429 * 110.33880 * 359.72433 * 7 6 5 9 9 C 1.31539 * 110.49686 * 0.45960 * 8 7 6 10 10 S 1.76208 * 126.44912 * 179.81684 * 9 8 7 11 11 C 1.80998 * 99.99889 * 359.68567 * 10 9 8 12 12 C 1.52996 * 109.47161 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47066 * 60.00373 * 12 11 10 14 14 O 1.42903 * 109.47446 * 300.00249 * 12 11 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.08997 * 109.47561 * 299.99906 * 1 2 3 24 24 H 1.09002 * 109.47605 * 60.00831 * 1 2 3 25 25 H 1.09007 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47119 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46799 * 299.99373 * 3 2 1 28 28 H 1.08999 * 109.47491 * 59.99618 * 3 2 1 29 29 H 1.09004 * 109.46397 * 299.99436 * 4 2 1 30 30 H 1.08999 * 109.47029 * 59.99735 * 4 2 1 31 31 H 1.09001 * 109.47034 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46826 * 60.00137 * 11 10 9 33 33 H 1.09000 * 109.47766 * 300.00468 * 11 10 9 34 34 H 0.96697 * 113.99557 * 300.00558 * 14 12 11 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1963 6 7 2.8300 -0.1621 2.2152 7 7 3.0193 -1.1082 3.0701 8 7 2.4071 -2.1744 2.6987 9 6 1.7850 -1.9744 1.5571 10 16 0.8230 -3.1534 0.6686 11 6 0.9886 -4.5842 1.7646 12 6 0.2117 -5.7661 1.1812 13 1 0.6113 -6.0137 0.1977 14 8 -1.1684 -5.4160 1.0602 15 6 0.3491 -6.9573 2.0941 16 1 0.9318 -6.8791 3.0000 17 6 -0.2744 -8.1453 1.7759 18 7 -0.9843 -8.2404 0.6729 19 14 -0.1104 -9.6194 2.9113 20 1 -0.6543 -9.2762 4.2498 21 1 -0.8684 -10.7652 2.3474 22 1 1.3222 -9.9891 3.0390 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1298 1.4426 -0.0005 27 1 1.6765 1.9563 -0.8901 28 1 1.6765 1.9565 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 0.5885 -4.3368 2.7480 33 1 2.0413 -4.8511 1.8573 34 1 -1.5901 -5.1833 1.8987 35 1 -1.4226 -9.0763 0.4488 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330726933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:01 Heat of formation + Delta-G solvation = 30.896590 kcal Electronic energy + Delta-G solvation = -18923.719095 eV Core-core repulsion = 15891.685757 eV Total energy + Delta-G solvation = -3032.033338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.01300 -38.74898 -37.90900 -34.27856 -33.42034 -33.29323 -31.62024 -28.58182 -28.48270 -27.45124 -25.90492 -24.02526 -23.10839 -21.58426 -19.28168 -18.84274 -17.69991 -17.45551 -16.68773 -16.32169 -16.11969 -15.72451 -15.37518 -15.30603 -14.66177 -14.38125 -14.07001 -13.69624 -13.43560 -13.31860 -13.25854 -13.04958 -12.84624 -12.79182 -12.74655 -12.60986 -12.42344 -12.11392 -12.03702 -11.96422 -11.54799 -11.44229 -11.13865 -10.70688 -10.33595 -8.95781 -8.16295 -6.41971 -0.26504 -0.22209 0.96032 1.04142 1.05869 1.45129 1.45489 1.53708 2.40888 3.06226 3.10957 3.58092 3.59630 3.71610 4.06310 4.08580 4.14420 4.21134 4.25565 4.42193 4.54358 4.59829 4.63522 4.75967 4.76184 4.92880 5.04820 5.15223 5.23031 5.27861 5.50862 5.66644 5.97819 6.66235 7.26449 7.29633 7.46010 8.87755 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034106 B = 0.004557 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.778723 B = 6142.598740 C = 6691.806991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.155 3.845 3 C -0.140 4.140 4 C -0.168 4.168 5 N -0.345 5.345 6 N -0.093 5.093 7 N -0.066 5.066 8 N -0.365 5.365 9 C 0.206 3.794 10 S 0.084 5.916 11 C -0.127 4.127 12 C 0.250 3.750 13 H 0.042 0.958 14 O -0.570 6.570 15 C -0.585 4.585 16 H 0.061 0.939 17 C 0.035 3.965 18 N -0.893 5.893 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.270 1.270 23 H 0.061 0.939 24 H 0.125 0.875 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.126 0.874 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.361 0.639 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.086 17.088 -5.598 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 C -0.198 4.198 4 C -0.226 4.226 5 N -0.147 5.147 6 N -0.080 5.080 7 N -0.061 5.061 8 N -0.222 5.222 9 C -0.178 4.178 10 S 0.311 5.689 11 C -0.276 4.276 12 C 0.190 3.810 13 H 0.060 0.940 14 O -0.374 6.374 15 C -0.625 4.625 16 H 0.079 0.921 17 C -0.169 4.169 18 N -0.529 5.529 19 Si 0.783 3.217 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.195 1.195 23 H 0.080 0.920 24 H 0.144 0.856 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.207 0.793 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.343 17.438 -6.289 18.685 hybrid contribution 0.347 -1.157 1.802 2.169 sum 2.690 16.281 -4.487 17.101 Atomic orbital electron populations 1.22414 0.90381 1.04294 1.05485 1.21766 0.96443 0.94860 0.79530 1.22007 1.02120 0.90692 1.04967 1.22419 1.02183 1.01807 0.96190 1.52339 1.35447 1.07056 1.19810 1.82214 1.11204 1.19036 0.95553 1.77796 1.14251 0.94801 1.19289 1.74902 1.14947 1.20740 1.11642 1.28228 1.01282 0.91545 0.96710 1.85874 1.55120 1.01004 1.26905 1.24720 1.05824 0.95613 1.01421 1.18956 0.78996 0.87534 0.95547 0.94006 1.86521 1.25722 1.89952 1.35227 1.21839 1.34438 0.97123 1.09072 0.92070 1.25781 0.93704 1.01179 0.96212 1.70168 1.31130 1.26932 1.24689 0.85636 0.78462 0.78464 0.79185 1.19369 1.20826 1.19534 0.91951 0.85629 0.91556 0.91889 0.86372 0.91883 0.91637 0.85583 0.91926 0.89295 0.89200 0.79303 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 8.52 71.98 0.61 -2.05 16 2 C 0.16 2.87 1.10 3.60 0.00 2.87 16 3 C -0.14 -1.94 8.07 71.98 0.58 -1.36 16 4 C -0.17 -2.65 8.52 71.98 0.61 -2.04 16 5 N -0.35 -9.71 3.51 -307.63 -1.08 -10.79 16 6 N -0.09 -3.02 13.08 37.02 0.48 -2.54 16 7 N -0.07 -2.46 13.38 37.02 0.50 -1.97 16 8 N -0.36 -13.93 11.57 -57.41 -0.66 -14.59 16 9 C 0.21 6.80 7.65 179.85 1.38 8.18 16 10 S 0.08 2.66 17.74 -56.49 -1.00 1.66 16 11 C -0.13 -4.95 4.87 71.98 0.35 -4.60 16 12 C 0.25 11.78 2.88 29.85 0.09 11.87 16 13 H 0.04 2.18 8.14 -2.38 -0.02 2.17 16 14 O -0.57 -26.76 12.31 -148.98 -1.83 -28.59 16 15 C -0.59 -30.53 8.76 25.60 0.22 -30.30 16 16 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 17 C 0.04 1.87 5.40 84.66 0.46 2.33 16 18 N -0.89 -50.49 12.83 21.45 0.28 -50.21 16 19 Si 0.96 41.84 29.54 68.60 2.03 43.87 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.30 6.03 -2.38 -0.01 1.29 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.28 6.03 -2.38 -0.01 1.26 16 30 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.36 15.00 9.04 -74.06 -0.67 14.33 16 35 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -65.21 309.60 3.44 -61.77 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.44 Total: 16.51 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.30 Total: -15.10 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -0.49 Total: -80.10 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.83 Total: -28.59 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.00 Total: 1.66 kcal Total: -65.21 3.44 -61.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330726933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.667 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds