Wall clock time and date at job start Mon Mar 30 2020 01:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 N 1.40593 * 127.38428 * 269.68080 * 5 4 2 7 7 N 1.28898 * 106.83472 * 179.86699 * 6 5 4 8 8 N 1.28423 * 110.34257 * 0.41546 * 7 6 5 9 9 C 1.31541 * 110.49591 * 359.72763 * 8 7 6 10 10 S 1.76208 * 126.45016 * 180.02562 * 9 8 7 11 11 C 1.81000 * 99.99791 * 0.02562 * 10 9 8 12 12 C 1.53006 * 109.46795 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46832 * 60.00303 * 12 11 10 14 14 O 1.42896 * 109.47372 * 300.00339 * 12 11 10 15 15 C 1.50703 * 109.47021 * 179.97438 * 12 11 10 16 16 H 1.07996 * 119.99698 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00012 * 180.02562 * 15 12 11 18 18 N 1.31508 * 119.99654 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00001 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47201 * 89.99887 * 19 17 15 21 21 H 1.48496 * 109.47190 * 209.99993 * 19 17 15 22 22 H 1.48500 * 109.46939 * 329.99637 * 19 17 15 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 31 31 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 32 32 H 1.08999 * 109.46993 * 299.99561 * 11 10 9 33 33 H 1.08998 * 109.47183 * 60.00361 * 11 10 9 34 34 H 0.96706 * 113.99684 * 299.99598 * 14 12 11 35 35 H 0.97009 * 119.99614 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 -2.1327 -1.1906 6 7 2.3840 -3.1964 -0.6336 7 7 1.6757 -4.2612 -0.7945 8 7 0.5795 -3.9807 -1.4019 9 6 0.5159 -2.6937 -1.6665 10 16 -0.8010 -1.8572 -2.4856 11 6 -1.9131 -3.2509 -2.7972 12 6 -3.1651 -2.7522 -3.5215 13 1 -2.8792 -2.2966 -4.4695 14 8 -3.8313 -1.7835 -2.7093 15 6 -4.0908 -3.9127 -3.7815 16 1 -3.8139 -4.9063 -3.4617 17 6 -5.2911 -3.7058 -4.4276 18 7 -5.6283 -2.4956 -4.8166 19 14 -6.4387 -5.1441 -4.7492 20 1 -7.3680 -5.3021 -3.6017 21 1 -7.2190 -4.8877 -5.9864 22 1 -5.6415 -6.3859 -4.9153 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -0.2617 -2.1370 31 1 3.1264 -0.6442 -1.2952 32 1 -1.4047 -3.9899 -3.4164 33 1 -2.1994 -3.7062 -1.8491 34 1 -4.1149 -2.1203 -1.8483 35 1 -6.4727 -2.3501 -5.2715 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330732212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:03 Heat of formation + Delta-G solvation = 47.821093 kcal Electronic energy + Delta-G solvation = -18758.519614 eV Core-core repulsion = 15727.220177 eV Total energy + Delta-G solvation = -3031.299436 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.70708 -37.32883 -36.06534 -33.47267 -32.27823 -32.06351 -29.86605 -27.69132 -27.37798 -25.52433 -23.48219 -22.99679 -21.15421 -20.59309 -17.96829 -17.28228 -16.71016 -16.51293 -15.36789 -14.72977 -14.51393 -14.42222 -14.30600 -14.09503 -13.70069 -13.25418 -12.72335 -12.48769 -12.23480 -12.19811 -11.92036 -11.74521 -11.38160 -11.34669 -11.13653 -11.03896 -10.97504 -10.81679 -10.64683 -10.38959 -10.25735 -10.06004 -9.32050 -8.72352 -8.45374 -7.62509 -6.15483 -4.35316 1.01042 1.04998 2.16899 2.39382 2.47653 3.22675 3.30136 3.33861 4.14500 4.30391 4.32889 4.62669 4.71674 4.95378 4.99796 5.12234 5.25454 5.39228 5.44583 5.49040 5.64824 5.65598 5.70919 5.79210 5.87125 5.91052 6.04718 6.15274 6.18232 6.55228 7.40438 7.69079 7.92752 8.57217 8.65868 9.15525 9.40907 10.88600 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028467 B = 0.004623 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.370078 B = 6055.662669 C = 6804.465105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.125 3.875 5 N -0.367 5.367 6 N -0.099 5.099 7 N -0.038 5.038 8 N -0.338 5.338 9 C 0.219 3.781 10 S 0.034 5.966 11 C -0.124 4.124 12 C 0.245 3.755 13 H 0.068 0.932 14 O -0.560 6.560 15 C -0.570 4.570 16 H 0.062 0.938 17 C 0.082 3.918 18 N -0.857 5.857 19 Si 0.896 3.104 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.350 0.650 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 7.769 6.948 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.131 4.131 3 C -0.201 4.201 4 C 0.003 3.997 5 N -0.167 5.167 6 N -0.086 5.086 7 N -0.034 5.034 8 N -0.195 5.195 9 C -0.165 4.165 10 S 0.262 5.738 11 C -0.273 4.273 12 C 0.185 3.815 13 H 0.086 0.914 14 O -0.363 6.363 15 C -0.609 4.609 16 H 0.081 0.919 17 C -0.125 4.125 18 N -0.492 5.492 19 Si 0.722 3.278 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.195 0.805 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.066 8.268 6.588 16.807 hybrid contribution -0.713 -1.650 0.297 1.822 sum 12.353 6.618 6.886 15.614 Atomic orbital electron populations 1.22077 0.93350 1.03009 1.03056 1.21563 0.97717 0.96809 0.97028 1.21770 1.01040 0.94334 1.02988 1.22223 1.02764 0.73771 1.00956 1.51562 1.13103 1.10115 1.41883 1.82355 1.17444 0.89565 1.19262 1.77811 0.98562 1.18459 1.08603 1.75009 1.15151 1.10141 1.19186 1.28356 0.94690 0.93748 0.99665 1.86230 1.08250 1.13715 1.65648 1.25126 0.99189 0.96799 1.06200 1.19268 0.83998 0.88978 0.89273 0.91417 1.86586 1.78576 1.40497 1.30593 1.21476 1.03872 0.94173 1.41427 0.91947 1.25018 0.97727 0.95696 0.94073 1.70068 1.22385 1.20188 1.36524 0.86556 0.80739 0.82571 0.77907 1.20357 1.20999 1.19600 0.92288 0.91918 0.91086 0.90273 0.91595 0.92292 0.91800 0.87495 0.87579 0.88606 0.89067 0.80534 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 7.96 37.16 0.30 -1.35 16 2 C -0.11 -0.98 3.13 -90.62 -0.28 -1.27 16 3 C -0.14 -0.91 9.19 37.16 0.34 -0.57 16 4 C 0.12 1.22 5.79 -4.05 -0.02 1.19 16 5 N -0.37 -5.22 3.50 -61.30 -0.21 -5.44 16 6 N -0.10 -1.62 13.93 60.35 0.84 -0.78 16 7 N -0.04 -0.71 13.38 60.35 0.81 0.10 16 8 N -0.34 -6.33 11.57 30.50 0.35 -5.98 16 9 C 0.22 3.58 6.88 -89.18 -0.61 2.96 16 10 S 0.03 0.54 19.28 -107.50 -2.07 -1.53 16 11 C -0.12 -2.37 4.87 37.16 0.18 -2.19 16 12 C 0.25 5.66 2.87 -27.88 -0.08 5.58 16 13 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 14 O -0.56 -12.98 12.32 -35.23 -0.43 -13.41 16 15 C -0.57 -14.65 8.76 -34.44 -0.30 -14.95 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 18 N -0.86 -23.92 12.84 55.43 0.71 -23.21 16 19 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H 0.06 0.76 5.86 -51.93 -0.30 0.46 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.11 0.93 7.85 -51.93 -0.41 0.52 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 33 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.35 7.21 9.04 45.56 0.41 7.62 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -29.86 312.48 -4.96 -34.82 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.06 Total: 3.95 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -0.58 Total: -8.51 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 2.50 Total: -35.32 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.43 Total: -13.41 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.07 Total: -1.53 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.86 -4.96 -34.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330732212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.638 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds