Wall clock time and date at job start Mon Mar 30 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 N 1.40593 * 127.38428 * 269.68080 * 5 4 2 7 7 N 1.28898 * 106.83472 * 179.86699 * 6 5 4 8 8 N 1.28423 * 110.34257 * 0.41546 * 7 6 5 9 9 C 1.31541 * 110.49591 * 359.72763 * 8 7 6 10 10 S 1.76208 * 126.45016 * 180.02562 * 9 8 7 11 11 C 1.81000 * 99.99791 * 0.02562 * 10 9 8 12 12 C 1.53006 * 109.46795 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46832 * 60.00303 * 12 11 10 14 14 O 1.42896 * 109.47372 * 300.00339 * 12 11 10 15 15 C 1.50703 * 109.47021 * 179.97438 * 12 11 10 16 16 H 1.07996 * 119.99698 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00012 * 180.02562 * 15 12 11 18 18 N 1.31508 * 119.99654 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00001 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47201 * 89.99887 * 19 17 15 21 21 H 1.48496 * 109.47190 * 209.99993 * 19 17 15 22 22 H 1.48500 * 109.46939 * 329.99637 * 19 17 15 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 31 31 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 32 32 H 1.08999 * 109.46993 * 299.99561 * 11 10 9 33 33 H 1.08998 * 109.47183 * 60.00361 * 11 10 9 34 34 H 0.96706 * 113.99684 * 299.99598 * 14 12 11 35 35 H 0.97009 * 119.99614 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 -2.1327 -1.1906 6 7 2.3840 -3.1964 -0.6336 7 7 1.6757 -4.2612 -0.7945 8 7 0.5795 -3.9807 -1.4019 9 6 0.5159 -2.6937 -1.6665 10 16 -0.8010 -1.8572 -2.4856 11 6 -1.9131 -3.2509 -2.7972 12 6 -3.1651 -2.7522 -3.5215 13 1 -2.8792 -2.2966 -4.4695 14 8 -3.8313 -1.7835 -2.7093 15 6 -4.0908 -3.9127 -3.7815 16 1 -3.8139 -4.9063 -3.4617 17 6 -5.2911 -3.7058 -4.4276 18 7 -5.6283 -2.4956 -4.8166 19 14 -6.4387 -5.1441 -4.7492 20 1 -7.3680 -5.3021 -3.6017 21 1 -7.2190 -4.8877 -5.9864 22 1 -5.6415 -6.3859 -4.9153 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -0.2617 -2.1370 31 1 3.1264 -0.6442 -1.2952 32 1 -1.4047 -3.9899 -3.4164 33 1 -2.1994 -3.7062 -1.8491 34 1 -4.1149 -2.1203 -1.8483 35 1 -6.4727 -2.3501 -5.2715 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330732212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:02 Heat of formation + Delta-G solvation = 26.921797 kcal Electronic energy + Delta-G solvation = -18759.425875 eV Core-core repulsion = 15727.220177 eV Total energy + Delta-G solvation = -3032.205698 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.99799 -38.21930 -37.89085 -34.50857 -34.27793 -33.39505 -31.61061 -28.66096 -28.06529 -27.40618 -24.74674 -24.27157 -22.88695 -21.40854 -19.34715 -19.02592 -17.94750 -17.71419 -16.68674 -16.31524 -16.15586 -16.09243 -15.59871 -15.15811 -14.89072 -14.42991 -14.03059 -13.56943 -13.51283 -13.24989 -13.15006 -12.96856 -12.80505 -12.78288 -12.72409 -12.33316 -12.17483 -12.05252 -11.85453 -11.80731 -11.66434 -11.31923 -11.13950 -10.72213 -10.33426 -8.93072 -8.16374 -6.41875 -0.27955 -0.23409 0.95560 1.03835 1.12017 1.43573 1.45828 1.55559 2.40975 3.11040 3.14387 3.57105 3.65363 3.96477 3.97134 4.06787 4.13008 4.19938 4.25729 4.28797 4.56586 4.58201 4.78679 4.83787 4.92991 5.01408 5.05838 5.15021 5.35373 5.41411 5.51311 5.66989 5.97870 6.66756 7.25245 7.30112 7.46459 8.87865 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028467 B = 0.004623 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.370078 B = 6055.662669 C = 6804.465105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C -0.138 4.138 4 C 0.110 3.890 5 N -0.350 5.350 6 N -0.096 5.096 7 N -0.062 5.062 8 N -0.365 5.365 9 C 0.210 3.790 10 S 0.083 5.917 11 C -0.122 4.122 12 C 0.249 3.751 13 H 0.042 0.958 14 O -0.569 6.569 15 C -0.584 4.584 16 H 0.062 0.938 17 C 0.035 3.965 18 N -0.893 5.893 19 Si 0.958 3.042 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.361 0.639 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.444 8.639 7.389 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.124 4.124 3 C -0.196 4.196 4 C -0.010 4.010 5 N -0.150 5.150 6 N -0.084 5.084 7 N -0.057 5.057 8 N -0.223 5.223 9 C -0.174 4.174 10 S 0.310 5.690 11 C -0.271 4.271 12 C 0.189 3.811 13 H 0.060 0.940 14 O -0.374 6.374 15 C -0.623 4.623 16 H 0.080 0.920 17 C -0.169 4.169 18 N -0.530 5.530 19 Si 0.782 3.218 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.207 0.793 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.009 9.145 7.041 18.151 hybrid contribution -0.904 -1.808 0.218 2.033 sum 13.105 7.337 7.258 16.681 Atomic orbital electron populations 1.22085 0.94656 1.01293 1.03637 1.21524 0.96477 0.98326 0.96034 1.21749 1.01969 0.92205 1.03650 1.22801 1.04745 0.71328 1.02130 1.51840 1.11888 1.11154 1.40127 1.82255 1.17465 0.89795 1.18861 1.77794 0.98896 1.19356 1.09692 1.74920 1.15784 1.11579 1.19984 1.28292 0.95469 0.93470 1.00141 1.85940 1.07071 1.10519 1.65494 1.24681 0.98819 0.98102 1.05538 1.18964 0.85297 0.87912 0.88904 0.94009 1.86525 1.78932 1.40617 1.31302 1.21863 1.04538 0.94992 1.40930 0.92028 1.25776 0.99295 0.97919 0.93905 1.70174 1.22964 1.22091 1.37728 0.85583 0.78781 0.79622 0.77774 1.19836 1.20784 1.19209 0.95022 0.91003 0.90927 0.91151 0.91119 0.90817 0.91003 0.85992 0.84918 0.89117 0.89150 0.79299 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 7.96 71.98 0.57 -2.48 16 2 C -0.10 -1.58 3.13 -10.79 -0.03 -1.61 16 3 C -0.14 -1.30 9.19 71.98 0.66 -0.64 16 4 C 0.11 1.84 5.79 86.38 0.50 2.34 16 5 N -0.35 -9.39 3.50 -347.87 -1.22 -10.61 16 6 N -0.10 -3.04 13.93 37.02 0.52 -2.53 16 7 N -0.06 -2.26 13.38 37.02 0.50 -1.76 16 8 N -0.37 -13.57 11.57 -57.41 -0.66 -14.24 16 9 C 0.21 6.67 6.88 179.85 1.24 7.91 16 10 S 0.08 2.55 19.28 -56.49 -1.09 1.46 16 11 C -0.12 -4.67 4.87 71.98 0.35 -4.32 16 12 C 0.25 11.63 2.87 29.85 0.09 11.71 16 13 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 14 O -0.57 -26.45 12.32 -148.98 -1.84 -28.29 16 15 C -0.58 -30.20 8.76 25.60 0.22 -29.97 16 16 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 17 C 0.03 1.84 5.40 84.66 0.46 2.30 16 18 N -0.89 -50.29 12.84 21.45 0.28 -50.01 16 19 Si 0.96 41.66 29.54 68.60 2.03 43.69 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H 0.03 0.78 5.86 -2.39 -0.01 0.76 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.35 7.88 -2.39 -0.02 1.33 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.12 1.74 7.85 -2.38 -0.02 1.72 16 31 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 3.54 8.14 -2.40 -0.02 3.52 16 33 H 0.09 3.46 8.14 -2.40 -0.02 3.44 16 34 H 0.36 14.83 9.04 -74.05 -0.67 14.16 16 35 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -63.80 312.48 2.99 -60.80 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.43 Total: 16.24 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.06 Total: -14.76 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -0.60 Total: -79.15 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.84 Total: -28.29 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.09 Total: 1.46 kcal Total: -63.80 2.99 -60.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330732212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.727 kcal (2) G-P(sol) polarization free energy of solvation -63.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds