Wall clock time and date at job start Mon Mar 30 2020 01:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 115.56263 * 2 1 4 4 C 1.53002 * 117.49427 * 214.30442 * 2 1 3 5 5 H 1.08995 * 117.49907 * 0.03174 * 4 2 1 6 6 C 1.50703 * 117.49299 * 145.02130 * 4 2 1 7 7 O 1.21283 * 120.00317 * 359.91439 * 6 4 2 8 8 N 1.34777 * 119.99512 * 179.91635 * 6 4 2 9 9 C 1.46506 * 119.99692 * 180.02562 * 8 6 4 10 10 C 1.50700 * 109.46957 * 269.99667 * 9 8 6 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46986 * 270.00126 * 14 12 10 16 16 H 1.48496 * 109.47029 * 30.00143 * 14 12 10 17 17 H 1.48499 * 109.47352 * 149.99973 * 14 12 10 18 18 C 1.46494 * 120.00353 * 359.97438 * 8 6 4 19 19 C 1.52997 * 109.47562 * 270.00319 * 18 8 6 20 20 C 1.47196 * 109.47745 * 179.97438 * 19 18 8 21 21 N 6.67784 * 105.00188 * 190.50265 * 2 1 3 22 22 C 1.52992 * 60.03426 * 252.52483 * 4 2 1 23 23 F 1.39902 * 117.49850 * 107.48084 * 22 4 2 24 24 F 1.39900 * 117.50228 * 252.50492 * 22 4 2 25 25 H 1.08997 * 109.47455 * 205.69388 * 1 2 3 26 26 H 1.09009 * 109.46870 * 325.69079 * 1 2 3 27 27 H 1.08994 * 109.47288 * 85.68753 * 1 2 3 28 28 H 1.08994 * 109.47197 * 150.00056 * 9 8 6 29 29 H 1.08998 * 109.47414 * 29.99736 * 9 8 6 30 30 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 31 31 H 1.09005 * 109.47406 * 30.00419 * 18 8 6 32 32 H 1.09005 * 109.47323 * 150.00309 * 18 8 6 33 33 H 1.09006 * 109.46984 * 299.99913 * 19 18 8 34 34 H 1.09005 * 109.47152 * 59.99253 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7649 5 1 1.6112 -1.8583 -1.2685 6 6 3.5293 -0.7813 -1.4608 7 8 3.9710 0.3467 -1.4026 8 7 4.1945 -1.7309 -2.1479 9 6 5.4516 -1.4007 -2.8239 10 6 5.1607 -0.9436 -4.2301 11 1 4.1413 -0.9028 -4.5846 12 6 6.1958 -0.5776 -5.0641 13 7 7.4371 -0.6279 -4.6326 14 14 5.8352 -0.0103 -6.8070 15 1 5.8431 -1.1813 -7.7202 16 1 4.5016 0.6416 -6.8494 17 1 6.8742 0.9597 -7.2368 18 6 3.6612 -3.0936 -2.2178 19 6 4.2093 -3.9163 -1.0501 20 6 3.6730 -5.2854 -1.1199 21 7 3.2586 -6.3422 -1.1758 22 6 2.2367 -1.1219 0.7650 23 9 1.4340 -2.0685 1.4106 24 9 3.4370 -0.8071 1.4110 25 1 -0.3634 -0.9260 0.4455 26 1 -0.3633 0.8489 0.5793 27 1 -0.3633 0.0773 -1.0247 28 1 6.0908 -2.2831 -2.8536 29 1 5.9581 -0.6033 -2.2801 30 1 7.6244 -0.9221 -3.7274 31 1 2.5732 -3.0614 -2.1604 32 1 3.9619 -3.5536 -3.1591 33 1 5.2973 -3.9486 -1.1075 34 1 3.9087 -3.4563 -0.1087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331794877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:22 Heat of formation + Delta-G solvation = -101.635167 kcal Electronic energy + Delta-G solvation = -21181.907248 eV Core-core repulsion = 17557.993765 eV Total energy + Delta-G solvation = -3623.913484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.82994 -48.49419 -41.13826 -38.24478 -37.51216 -36.77687 -35.13162 -32.25784 -30.18096 -28.71994 -25.79362 -25.46712 -23.76009 -22.17792 -20.43258 -19.35496 -18.81485 -18.56294 -18.02438 -17.65977 -17.16953 -16.80930 -15.97809 -15.73833 -15.54454 -15.24281 -15.15069 -14.75936 -14.63880 -14.49538 -14.26962 -13.93912 -13.87512 -13.67805 -13.63899 -13.32947 -12.98384 -12.94070 -12.67543 -12.45390 -12.08970 -11.95858 -11.67619 -11.21850 -11.13309 -10.80666 -10.56083 -9.61584 -8.63855 -6.39314 1.10134 1.53835 1.59185 1.62758 1.72520 1.79354 1.85431 2.00749 2.30896 2.57229 2.85728 3.08124 3.16315 3.29483 3.44930 3.64588 3.94551 3.96971 4.13952 4.28658 4.49337 4.53318 4.64779 4.77342 4.85791 4.89095 5.00820 5.01933 5.28844 5.46038 5.85932 6.18640 6.45853 6.50477 6.52860 7.15811 7.39533 8.72989 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.006224 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.701480 B = 4497.898752 C = 5498.365963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 H 0.127 0.873 4 C -0.188 4.188 5 H 0.181 0.819 6 C 0.532 3.468 7 O -0.572 6.572 8 N -0.585 5.585 9 C 0.245 3.755 10 C -0.616 4.616 11 H 0.050 0.950 12 C -0.028 4.028 13 N -0.934 5.934 14 Si 1.116 2.884 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.286 1.286 18 C 0.111 3.889 19 C -0.037 4.037 20 C 0.244 3.756 21 N -0.478 5.478 22 C 0.216 3.784 23 F -0.147 7.147 24 F -0.168 7.168 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.033 0.967 29 H 0.000 1.000 30 H 0.258 0.742 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 -2.796 9.155 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.124 4.124 3 H 0.145 0.855 4 C -0.210 4.210 5 H 0.198 0.802 6 C 0.319 3.681 7 O -0.452 6.452 8 N -0.314 5.314 9 C 0.124 3.876 10 C -0.655 4.655 11 H 0.068 0.932 12 C -0.227 4.227 13 N -0.571 5.571 14 Si 0.938 3.062 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.212 1.212 18 C -0.013 4.013 19 C -0.079 4.079 20 C -0.074 4.074 21 N -0.156 5.156 22 C 0.179 3.821 23 F -0.127 7.127 24 F -0.149 7.149 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.018 0.982 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.836 -3.302 7.751 16.199 hybrid contribution 0.257 -0.229 1.671 1.706 sum -13.579 -3.531 9.422 16.901 Atomic orbital electron populations 1.21504 0.87217 1.04685 1.04683 1.23869 0.99364 0.95066 0.94074 0.85482 1.23990 0.98445 1.06220 0.92302 0.80201 1.19750 0.84971 0.84475 0.78892 1.90688 1.68993 1.22583 1.62902 1.47840 1.24218 1.09688 1.49701 1.19005 0.81867 0.95271 0.91444 1.22569 0.95405 1.48689 0.98817 0.93200 1.27160 0.92421 0.94302 1.08845 1.70899 1.20847 1.45892 1.19457 0.82935 0.75525 0.77080 0.70695 1.19198 1.20210 1.21210 1.21625 1.00398 0.80633 0.98660 1.19747 1.03293 0.82812 1.02001 1.28964 0.92147 0.94369 0.91871 1.81273 1.10891 1.13429 1.09985 1.19961 0.81250 0.95022 0.85852 1.93040 1.71531 1.65194 1.82940 1.93047 1.45737 1.92727 1.83356 0.90251 0.89252 0.89300 0.94955 0.98189 0.93218 0.87120 0.88948 0.86025 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 10.16 71.98 0.73 -0.90 16 2 C -0.10 -2.22 5.91 -10.76 -0.06 -2.28 16 3 H 0.13 3.19 7.67 -2.39 -0.02 3.17 16 4 C -0.19 -4.50 4.99 -11.54 -0.06 -4.56 16 5 H 0.18 2.97 6.44 -2.39 -0.02 2.95 16 6 C 0.53 19.28 7.09 87.66 0.62 19.90 16 7 O -0.57 -26.75 15.84 -3.04 -0.05 -26.79 16 8 N -0.59 -21.10 2.46 -826.15 -2.03 -23.13 16 9 C 0.25 11.67 4.47 85.63 0.38 12.05 16 10 C -0.62 -32.98 9.39 25.60 0.24 -32.74 16 11 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 12 C -0.03 -1.57 5.46 84.65 0.46 -1.11 16 13 N -0.93 -55.29 13.65 21.45 0.29 -55.00 16 14 Si 1.12 48.96 29.90 68.60 2.05 51.02 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 18 C 0.11 2.75 5.19 86.38 0.45 3.20 16 19 C -0.04 -0.75 6.03 28.79 0.17 -0.58 16 20 C 0.24 5.57 15.44 89.43 1.38 6.95 16 21 N -0.48 -13.46 18.54 20.01 0.37 -13.09 16 22 C 0.22 5.07 5.14 30.62 0.16 5.23 16 23 F -0.15 -3.03 16.50 44.97 0.74 -2.29 16 24 F -0.17 -4.98 17.13 44.97 0.77 -4.21 16 25 H 0.08 0.91 7.10 -2.39 -0.02 0.90 16 26 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.03 1.50 7.94 -2.39 -0.02 1.48 16 29 H 0.00 0.00 7.29 -2.39 -0.02 -0.01 16 30 H 0.26 15.29 7.22 -92.70 -0.67 14.62 16 31 H 0.11 2.02 6.00 -2.38 -0.01 2.01 16 32 H 0.09 2.45 8.07 -2.38 -0.02 2.43 16 33 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -72.38 312.70 7.86 -64.53 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 1.23 Total: 3.82 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 4.48 Total: 5.15 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -1.37 Total: -91.21 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 1.51 Total: -6.50 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.05 Total: 51.02 kcal Total: -72.38 7.86 -64.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331794877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.110 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds