Wall clock time and date at job start Mon Mar 30 2020 01:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 115.55298 * 2 1 4 4 C 1.53005 * 117.49665 * 145.66789 * 2 1 3 5 5 H 1.09002 * 117.49917 * 359.97438 * 4 2 1 6 6 C 1.50700 * 117.49884 * 215.00189 * 4 2 1 7 7 O 1.21288 * 119.99910 * 0.08605 * 6 4 2 8 8 N 1.34770 * 119.99999 * 180.08744 * 6 4 2 9 9 C 1.46511 * 119.99717 * 179.97438 * 8 6 4 10 10 C 1.50695 * 109.46923 * 90.00015 * 9 8 6 11 11 H 1.08004 * 120.00477 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99805 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00093 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00228 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.46837 * 89.99625 * 14 12 10 16 16 H 1.48495 * 109.47309 * 210.00220 * 14 12 10 17 17 H 1.48502 * 109.46817 * 330.00120 * 14 12 10 18 18 C 1.46496 * 120.00437 * 0.02562 * 8 6 4 19 19 C 1.53000 * 109.47160 * 89.99904 * 18 8 6 20 20 C 1.47200 * 109.47069 * 180.02562 * 19 18 8 21 21 N 6.67793 * 105.01240 * 169.47854 * 2 1 3 22 22 C 1.52999 * 60.00169 * 107.48781 * 4 2 1 23 23 F 1.39906 * 117.49960 * 107.48425 * 22 4 2 24 24 F 1.39901 * 117.50180 * 252.51109 * 22 4 2 25 25 H 1.08998 * 109.47083 * 274.33348 * 1 2 3 26 26 H 1.08994 * 109.46707 * 34.33440 * 1 2 3 27 27 H 1.09006 * 109.47074 * 154.33246 * 1 2 3 28 28 H 1.08998 * 109.46674 * 209.99669 * 9 8 6 29 29 H 1.09000 * 109.47195 * 330.00141 * 9 8 6 30 30 H 0.96999 * 120.00507 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.47143 * 209.99860 * 18 8 6 32 32 H 1.09000 * 109.46919 * 330.00053 * 18 8 6 33 33 H 1.09003 * 109.47061 * 300.00481 * 19 18 8 34 34 H 1.09000 * 109.47083 * 60.00250 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 0.7655 5 1 1.6112 -1.8578 1.2694 6 6 3.5290 -0.7805 1.4616 7 8 3.9705 0.3476 1.4032 8 7 4.1943 -1.7298 2.1490 9 6 5.4512 -1.3991 2.8254 10 6 5.1597 -0.9417 4.2313 11 1 4.1404 -0.9017 4.5859 12 6 6.1946 -0.5753 5.0655 13 7 5.9403 -0.1756 6.2924 14 14 7.9578 -0.6451 4.4526 15 1 8.3205 0.6577 3.8392 16 1 8.8673 -0.9260 5.5923 17 1 8.0872 -1.7225 3.4389 18 6 3.6613 -3.0926 2.2191 19 6 4.2100 -3.9155 1.0518 20 6 3.6740 -5.2846 1.1219 21 7 3.2598 -6.3416 1.1778 22 6 2.2365 -1.1214 -0.7645 23 9 3.4367 -0.8061 -1.4107 24 9 1.4339 -2.0681 -1.4102 25 1 -0.3633 0.0777 1.0247 26 1 -0.3632 0.8486 -0.5796 27 1 -0.3633 -0.9263 -0.4452 28 1 6.0905 -2.2814 2.8555 29 1 5.9575 -0.6017 2.2815 30 1 6.6684 0.0819 6.8794 31 1 3.9619 -3.5523 3.1606 32 1 2.5733 -3.0606 2.1614 33 1 3.9095 -3.4557 0.1102 34 1 5.2980 -3.9475 1.1095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331794878.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:24 Heat of formation + Delta-G solvation = -74.292430 kcal Electronic energy + Delta-G solvation = -21186.343275 eV Core-core repulsion = 17563.615462 eV Total energy + Delta-G solvation = -3622.727814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.78583 -47.43626 -39.74461 -37.08861 -36.36694 -35.35591 -32.84045 -31.09998 -29.31091 -27.95612 -24.45923 -24.01417 -21.95298 -21.08043 -19.01155 -18.05131 -17.49900 -17.00320 -16.79598 -16.42038 -16.12051 -15.49407 -14.76873 -14.58757 -14.13780 -13.98974 -13.82195 -13.70414 -13.35090 -13.30996 -13.13972 -12.84000 -12.62161 -12.54773 -12.36234 -11.96568 -11.85979 -11.67324 -11.14947 -10.98239 -10.76140 -10.56525 -10.28313 -10.07506 -9.67160 -9.36216 -8.67497 -8.04909 -6.17142 -4.17606 2.34137 2.67057 2.74947 2.86978 3.21683 3.25893 3.29941 3.34481 3.54123 3.91737 4.12254 4.31601 4.34663 4.51121 4.73769 4.98363 4.99422 5.02464 5.16179 5.25503 5.35013 5.46823 5.50725 5.67355 5.75639 5.95317 5.99409 6.49087 6.77864 7.04915 7.48095 7.51087 7.89911 8.33744 8.62301 8.85733 9.41722 10.95880 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.006487 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.650572 B = 4315.049432 C = 5274.127571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 H 0.144 0.856 4 C -0.189 4.189 5 H 0.147 0.853 6 C 0.540 3.460 7 O -0.516 6.516 8 N -0.582 5.582 9 C 0.215 3.785 10 C -0.535 4.535 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.894 5.894 14 Si 0.874 3.126 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.265 1.265 18 C 0.115 3.885 19 C -0.050 4.050 20 C 0.216 3.784 21 N -0.440 5.440 22 C 0.215 3.785 23 F -0.151 7.151 24 F -0.157 7.157 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.266 0.734 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 -3.126 -13.074 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.134 4.134 3 H 0.161 0.839 4 C -0.212 4.212 5 H 0.165 0.835 6 C 0.325 3.675 7 O -0.392 6.392 8 N -0.313 5.313 9 C 0.095 3.905 10 C -0.573 4.573 11 H 0.095 0.905 12 C -0.128 4.128 13 N -0.532 5.532 14 Si 0.701 3.299 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.189 1.189 18 C -0.011 4.011 19 C -0.092 4.092 20 C -0.102 4.102 21 N -0.117 5.117 22 C 0.178 3.822 23 F -0.131 7.131 24 F -0.137 7.137 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.205 -4.048 -12.866 15.788 hybrid contribution 1.216 0.158 -0.276 1.257 sum -6.989 -3.891 -13.142 15.385 Atomic orbital electron populations 1.21434 0.90298 1.03362 1.03577 1.23724 0.97322 0.96396 0.96000 0.83856 1.24040 1.00692 1.04229 0.92207 0.83542 1.18941 0.83790 0.85328 0.79423 1.90719 1.67238 1.20204 1.61007 1.47784 1.25400 1.07758 1.50317 1.19802 0.80466 0.96845 0.93411 1.21278 0.95922 1.45328 0.94762 0.90543 1.24845 0.99003 0.94309 0.94677 1.69884 1.32593 1.44138 1.06572 0.86882 0.84940 0.79314 0.78757 1.19824 1.21019 1.18928 1.21406 0.98734 0.82884 0.98070 1.19862 1.03095 0.83880 1.02351 1.29006 0.93326 0.94719 0.93146 1.81239 1.09479 1.12348 1.08655 1.19930 0.81514 0.94259 0.86490 1.93076 1.44452 1.92522 1.83048 1.93017 1.72039 1.65455 1.83195 0.90368 0.90776 0.91343 0.94648 0.94053 0.92422 0.88091 0.90212 0.87767 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 10.16 37.16 0.38 -0.70 16 2 C -0.11 -1.32 5.91 -90.61 -0.54 -1.85 16 3 H 0.14 1.80 7.67 -51.93 -0.40 1.40 16 4 C -0.19 -2.42 4.99 -91.77 -0.46 -2.88 16 5 H 0.15 1.48 6.44 -51.93 -0.33 1.15 16 6 C 0.54 9.58 7.09 -10.99 -0.08 9.50 16 7 O -0.52 -11.34 15.84 5.55 0.09 -11.25 16 8 N -0.58 -10.21 2.46 -175.06 -0.43 -10.64 16 9 C 0.21 4.65 4.23 -5.19 -0.02 4.63 16 10 C -0.53 -14.19 9.94 -34.44 -0.34 -14.53 16 11 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 14 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 18 C 0.12 1.48 5.19 -4.04 -0.02 1.46 16 19 C -0.05 -0.53 6.03 -29.52 -0.18 -0.70 16 20 C 0.22 2.60 15.44 -20.74 -0.32 2.28 16 21 N -0.44 -6.43 18.54 42.18 0.78 -5.65 16 22 C 0.22 2.66 5.14 -26.73 -0.14 2.53 16 23 F -0.15 -2.19 17.13 2.25 0.04 -2.15 16 24 F -0.16 -1.82 16.50 2.25 0.04 -1.79 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.53 7.10 -51.93 -0.37 0.17 16 28 H 0.04 0.71 7.13 -51.93 -0.37 0.34 16 29 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.08 0.85 6.00 -51.93 -0.31 0.53 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -32.68 310.41 -4.35 -37.03 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.84 Total: -1.97 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.81 Total: 1.69 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 1.13 Total: -41.91 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.68 -4.35 -37.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331794878.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.260 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds