Wall clock time and date at job start Mon Mar 30 2020 01:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 115.55298 * 2 1 4 4 C 1.53005 * 117.49665 * 145.66789 * 2 1 3 5 5 H 1.09002 * 117.49917 * 359.97438 * 4 2 1 6 6 C 1.50700 * 117.49884 * 215.00189 * 4 2 1 7 7 O 1.21288 * 119.99910 * 0.08605 * 6 4 2 8 8 N 1.34770 * 119.99999 * 180.08744 * 6 4 2 9 9 C 1.46511 * 119.99717 * 179.97438 * 8 6 4 10 10 C 1.50695 * 109.46923 * 90.00015 * 9 8 6 11 11 H 1.08004 * 120.00477 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99805 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00093 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00228 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.46837 * 89.99625 * 14 12 10 16 16 H 1.48495 * 109.47309 * 210.00220 * 14 12 10 17 17 H 1.48502 * 109.46817 * 330.00120 * 14 12 10 18 18 C 1.46496 * 120.00437 * 0.02562 * 8 6 4 19 19 C 1.53000 * 109.47160 * 89.99904 * 18 8 6 20 20 C 1.47200 * 109.47069 * 180.02562 * 19 18 8 21 21 N 6.67793 * 105.01240 * 169.47854 * 2 1 3 22 22 C 1.52999 * 60.00169 * 107.48781 * 4 2 1 23 23 F 1.39906 * 117.49960 * 107.48425 * 22 4 2 24 24 F 1.39901 * 117.50180 * 252.51109 * 22 4 2 25 25 H 1.08998 * 109.47083 * 274.33348 * 1 2 3 26 26 H 1.08994 * 109.46707 * 34.33440 * 1 2 3 27 27 H 1.09006 * 109.47074 * 154.33246 * 1 2 3 28 28 H 1.08998 * 109.46674 * 209.99669 * 9 8 6 29 29 H 1.09000 * 109.47195 * 330.00141 * 9 8 6 30 30 H 0.96999 * 120.00507 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.47143 * 209.99860 * 18 8 6 32 32 H 1.09000 * 109.46919 * 330.00053 * 18 8 6 33 33 H 1.09003 * 109.47061 * 300.00481 * 19 18 8 34 34 H 1.09000 * 109.47083 * 60.00250 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 0.7655 5 1 1.6112 -1.8578 1.2694 6 6 3.5290 -0.7805 1.4616 7 8 3.9705 0.3476 1.4032 8 7 4.1943 -1.7298 2.1490 9 6 5.4512 -1.3991 2.8254 10 6 5.1597 -0.9417 4.2313 11 1 4.1404 -0.9017 4.5859 12 6 6.1946 -0.5753 5.0655 13 7 5.9403 -0.1756 6.2924 14 14 7.9578 -0.6451 4.4526 15 1 8.3205 0.6577 3.8392 16 1 8.8673 -0.9260 5.5923 17 1 8.0872 -1.7225 3.4389 18 6 3.6613 -3.0926 2.2191 19 6 4.2100 -3.9155 1.0518 20 6 3.6740 -5.2846 1.1219 21 7 3.2598 -6.3416 1.1778 22 6 2.2365 -1.1214 -0.7645 23 9 3.4367 -0.8061 -1.4107 24 9 1.4339 -2.0681 -1.4102 25 1 -0.3633 0.0777 1.0247 26 1 -0.3632 0.8486 -0.5796 27 1 -0.3633 -0.9263 -0.4452 28 1 6.0905 -2.2814 2.8555 29 1 5.9575 -0.6017 2.2815 30 1 6.6684 0.0819 6.8794 31 1 3.9619 -3.5523 3.1606 32 1 2.5733 -3.0606 2.1614 33 1 3.9095 -3.4557 0.1102 34 1 5.2980 -3.9475 1.1095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331794878.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:24 Heat of formation + Delta-G solvation = -94.800440 kcal Electronic energy + Delta-G solvation = -21187.232569 eV Core-core repulsion = 17563.615462 eV Total energy + Delta-G solvation = -3623.617108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.78300 -48.44438 -41.08255 -38.17544 -37.44850 -36.69347 -34.79214 -32.41457 -30.49771 -29.28173 -25.75372 -25.32844 -23.37374 -22.08331 -20.24406 -19.29057 -18.92132 -18.39194 -17.96924 -17.69271 -17.15676 -16.74775 -16.26916 -15.82081 -15.36183 -15.12729 -15.06160 -14.70821 -14.64205 -14.38413 -14.33631 -13.93043 -13.84485 -13.66582 -13.59136 -13.37697 -13.08933 -12.78175 -12.60504 -12.42558 -12.02780 -11.98826 -11.69669 -11.62714 -11.10585 -10.77825 -10.75618 -9.57112 -8.28502 -6.33515 1.15413 1.38884 1.42838 1.49697 1.65608 1.79772 1.90243 2.06417 2.35784 2.36375 2.92220 3.08013 3.12795 3.35300 3.49662 3.71354 4.02275 4.04033 4.17841 4.36298 4.56094 4.56924 4.73349 4.82836 4.87991 4.95105 5.03354 5.05285 5.30936 5.48755 5.54076 6.25997 6.50514 6.57612 6.69791 7.18272 7.33334 8.88036 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.006487 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.650572 B = 4315.049432 C = 5274.127571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.189 4.189 5 H 0.178 0.822 6 C 0.533 3.467 7 O -0.569 6.569 8 N -0.586 5.586 9 C 0.221 3.779 10 C -0.534 4.534 11 H 0.034 0.966 12 C 0.012 3.988 13 N -0.946 5.946 14 Si 0.940 3.060 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.228 1.228 18 C 0.109 3.891 19 C -0.038 4.038 20 C 0.244 3.756 21 N -0.483 5.483 22 C 0.221 3.779 23 F -0.165 7.165 24 F -0.148 7.148 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.267 0.733 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 -4.349 -14.947 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.127 4.127 3 H 0.146 0.854 4 C -0.211 4.211 5 H 0.195 0.805 6 C 0.321 3.679 7 O -0.448 6.448 8 N -0.315 5.315 9 C 0.099 3.901 10 C -0.573 4.573 11 H 0.052 0.948 12 C -0.186 4.186 13 N -0.587 5.587 14 Si 0.763 3.237 15 H -0.204 1.204 16 H -0.208 1.208 17 H -0.151 1.151 18 C -0.015 4.015 19 C -0.079 4.079 20 C -0.073 4.073 21 N -0.161 5.161 22 C 0.183 3.817 23 F -0.146 7.146 24 F -0.128 7.128 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.478 -5.329 -14.769 17.843 hybrid contribution 1.197 0.580 0.331 1.371 sum -7.281 -4.748 -14.438 16.853 Atomic orbital electron populations 1.21495 0.87543 1.04640 1.04509 1.23851 0.99230 0.95244 0.94412 0.85369 1.23993 0.98642 1.06105 0.92372 0.80481 1.19694 0.84841 0.84484 0.78910 1.90690 1.68858 1.22344 1.62914 1.47759 1.24394 1.09695 1.49629 1.19496 0.82806 0.97262 0.90492 1.21574 0.93977 1.44571 0.97190 0.94769 1.25804 1.04058 0.94046 0.94698 1.70046 1.34104 1.46221 1.08302 0.85827 0.78809 0.80081 0.78971 1.20414 1.20829 1.15077 1.21635 1.00333 0.80655 0.98913 1.19797 1.03762 0.82450 1.01865 1.29062 0.92065 0.94448 0.91750 1.81284 1.10980 1.13745 1.10110 1.19891 0.81242 0.94766 0.85754 1.93050 1.45544 1.92688 1.83294 1.93040 1.71608 1.65192 1.82942 0.89605 0.89303 0.90260 0.91871 0.95564 0.92452 0.88736 0.87669 0.86085 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 10.16 71.98 0.73 -0.97 16 2 C -0.11 -2.26 5.91 -10.79 -0.06 -2.33 16 3 H 0.13 3.15 7.67 -2.39 -0.02 3.13 16 4 C -0.19 -4.43 4.99 -11.54 -0.06 -4.49 16 5 H 0.18 2.95 6.44 -2.39 -0.02 2.94 16 6 C 0.53 18.48 7.09 87.66 0.62 19.10 16 7 O -0.57 -25.34 15.84 -3.06 -0.05 -25.38 16 8 N -0.59 -19.75 2.46 -826.15 -2.03 -21.78 16 9 C 0.22 9.37 4.23 85.63 0.36 9.73 16 10 C -0.53 -28.86 9.94 25.60 0.25 -28.60 16 11 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 12 C 0.01 0.67 5.47 84.66 0.46 1.13 16 13 N -0.95 -57.59 13.96 21.45 0.30 -57.29 16 14 Si 0.94 41.58 27.47 68.60 1.88 43.46 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.23 -8.66 6.54 99.48 0.65 -8.01 16 18 C 0.11 2.53 5.19 86.38 0.45 2.97 16 19 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 20 C 0.24 5.20 15.44 89.44 1.38 6.58 16 21 N -0.48 -13.16 18.54 20.01 0.37 -12.79 16 22 C 0.22 4.93 5.14 30.60 0.16 5.09 16 23 F -0.17 -4.55 17.13 44.97 0.77 -3.78 16 24 F -0.15 -2.94 16.50 44.97 0.74 -2.20 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.94 7.10 -2.38 -0.02 0.92 16 28 H 0.06 2.34 7.13 -2.39 -0.02 2.33 16 29 H 0.03 1.21 6.85 -2.39 -0.02 1.19 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.09 2.36 8.07 -2.39 -0.02 2.34 16 32 H 0.11 1.90 6.00 -2.39 -0.01 1.88 16 33 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -73.96 310.41 7.54 -66.42 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.08 Total: 5.63 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 4.47 Total: 7.72 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -1.36 Total: -91.86 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 1.51 Total: -5.98 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.46 kcal Total: -73.96 7.54 -66.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331794878.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.380 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds