Wall clock time and date at job start Mon Mar 30 2020 01:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 115.55088 * 2 1 4 4 C 1.53004 * 117.49755 * 145.67508 * 2 1 3 5 5 H 1.08999 * 117.49337 * 214.97339 * 4 2 1 6 6 C 1.50696 * 117.50060 * 359.97438 * 4 2 1 7 7 O 1.21277 * 120.00021 * 359.97438 * 6 4 2 8 8 N 1.34773 * 120.00048 * 180.02562 * 6 4 2 9 9 C 1.46500 * 120.00349 * 179.97438 * 8 6 4 10 10 C 1.50703 * 109.46890 * 89.99351 * 9 8 6 11 11 H 1.07995 * 120.00455 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99370 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00286 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99752 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47015 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46908 * 119.99635 * 14 12 10 17 17 H 1.48497 * 109.47173 * 240.00003 * 14 12 10 18 18 C 1.46500 * 119.99884 * 359.97438 * 8 6 4 19 19 C 1.53003 * 109.46900 * 90.00670 * 18 8 6 20 20 C 1.47203 * 109.47402 * 180.02562 * 19 18 8 21 21 N 6.67825 * 138.19029 * 126.78357 * 2 1 3 22 22 C 1.53002 * 117.49773 * 214.29700 * 2 1 3 23 23 F 1.39905 * 117.49802 * 359.97438 * 22 2 1 24 24 F 1.39897 * 117.49756 * 145.01859 * 22 2 1 25 25 H 1.09001 * 109.47002 * 274.32394 * 1 2 3 26 26 H 1.08993 * 109.46955 * 34.32831 * 1 2 3 27 27 H 1.09000 * 109.47050 * 154.32660 * 1 2 3 28 28 H 1.08993 * 109.47283 * 209.99587 * 9 8 6 29 29 H 1.08998 * 109.46425 * 329.99731 * 9 8 6 30 30 H 0.96994 * 119.99701 * 180.02562 * 13 12 10 31 31 H 1.08996 * 109.47479 * 210.00363 * 18 8 6 32 32 H 1.09002 * 109.47199 * 330.01192 * 18 8 6 33 33 H 1.09005 * 109.47347 * 300.00233 * 19 18 8 34 34 H 1.08998 * 109.47104 * 59.99905 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1208 0.7653 5 1 3.1716 -0.8748 1.2684 6 6 1.3721 -2.1399 1.4619 7 8 0.1640 -2.0521 1.4030 8 7 1.9416 -3.1484 2.1511 9 6 1.1014 -4.1388 2.8287 10 6 0.8125 -5.2803 1.8881 11 1 1.2142 -5.2689 0.8857 12 6 0.0344 -6.3387 2.3071 13 7 -0.4552 -6.3523 3.5276 14 14 -0.3243 -7.7533 1.1410 15 1 0.3373 -7.4990 -0.1640 16 1 0.1952 -9.0174 1.7219 17 1 -1.7908 -7.8677 0.9380 18 6 3.4011 -3.2542 2.2226 19 6 3.9097 -2.4769 3.4384 20 6 5.3762 -2.5826 3.5101 21 7 6.5078 -2.6659 3.5657 22 6 2.2365 -1.1212 -0.7647 23 9 1.4340 -2.0682 -1.4100 24 9 3.4366 -0.8058 -1.4108 25 1 -0.3633 0.0775 1.0248 26 1 -0.3633 0.8486 -0.5795 27 1 -0.3633 -0.9262 -0.4452 28 1 1.6222 -4.5160 3.7087 29 1 0.1642 -3.6728 3.1331 30 1 -1.0023 -7.0970 3.8224 31 1 3.6853 -4.3022 2.3166 32 1 3.8404 -2.8384 1.3159 33 1 3.6255 -1.4288 3.3446 34 1 3.4703 -2.8926 4.3452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331795664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:26 Heat of formation + Delta-G solvation = -75.531189 kcal Electronic energy + Delta-G solvation = -21284.061022 eV Core-core repulsion = 17661.279492 eV Total energy + Delta-G solvation = -3622.781530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.63281 -47.28779 -39.70970 -37.07569 -36.17852 -35.16564 -32.89715 -30.93284 -28.88288 -27.36633 -24.47092 -23.99625 -22.08078 -21.11580 -18.62364 -17.97401 -17.68955 -16.63799 -16.51440 -16.32373 -16.02614 -15.15833 -14.76829 -14.30348 -14.15747 -13.96961 -13.92741 -13.49619 -13.47405 -13.10763 -12.69218 -12.57945 -12.49393 -12.31340 -11.98731 -11.89528 -11.78811 -11.34210 -11.04005 -10.93570 -10.74189 -10.53633 -10.20512 -9.90665 -9.71129 -9.03511 -8.50705 -7.94926 -6.12503 -4.16931 2.44770 2.71687 2.77545 2.97630 3.27072 3.35191 3.37197 3.45611 3.66875 4.01378 4.14790 4.38209 4.51789 4.62269 4.83916 5.01494 5.10456 5.15364 5.23218 5.37309 5.47343 5.60052 5.75788 5.91841 6.02343 6.07000 6.58590 6.82845 7.26153 7.34545 7.53665 7.83880 8.10619 8.12947 8.70813 8.90107 9.49020 10.95664 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.007374 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.391930 B = 3796.044717 C = 5049.965136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 H 0.133 0.867 4 C -0.195 4.195 5 H 0.142 0.858 6 C 0.538 3.462 7 O -0.512 6.512 8 N -0.588 5.588 9 C 0.245 3.755 10 C -0.529 4.529 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.115 3.885 19 C -0.050 4.050 20 C 0.216 3.784 21 N -0.443 5.443 22 C 0.215 3.785 23 F -0.145 7.145 24 F -0.161 7.161 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.263 0.737 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 12.386 -3.424 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.132 4.132 3 H 0.151 0.849 4 C -0.218 4.218 5 H 0.160 0.840 6 C 0.323 3.677 7 O -0.387 6.387 8 N -0.319 5.319 9 C 0.127 3.873 10 C -0.568 4.568 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.208 1.208 18 C -0.012 4.012 19 C -0.092 4.092 20 C -0.102 4.102 21 N -0.120 5.120 22 C 0.178 3.822 23 F -0.125 7.125 24 F -0.141 7.141 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.392 12.136 -3.271 14.101 hybrid contribution -0.283 -1.009 -0.733 1.279 sum 6.109 11.127 -4.004 13.310 Atomic orbital electron populations 1.21426 0.89347 1.02836 1.03989 1.23696 0.98972 0.94278 0.96221 0.84921 1.24018 1.03666 1.01204 0.92886 0.84042 1.18952 0.87688 0.81276 0.79827 1.90715 1.13817 1.74056 1.60138 1.48163 1.05496 1.27037 1.51194 1.19414 0.90477 0.85319 0.92094 1.21451 1.32054 1.03823 0.99462 0.92218 1.24904 0.95354 0.98366 0.95268 1.69923 1.34493 1.31950 1.16854 0.86466 0.78265 0.81807 0.81077 1.19713 1.20958 1.20830 1.21351 0.82104 1.02154 0.95561 1.19903 0.81677 1.04054 1.03544 1.29074 0.95046 0.93025 0.93103 1.81216 1.13036 1.08943 1.08805 1.19854 0.81008 0.94765 0.86588 1.93083 1.71643 1.64905 1.82914 1.93026 1.45192 1.92620 1.83282 0.89778 0.92648 0.90212 0.94477 0.93334 0.92687 0.88420 0.90725 0.87558 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 8.40 37.16 0.31 -1.23 16 2 C -0.11 -1.30 6.39 -90.61 -0.58 -1.88 16 3 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.20 -2.54 4.78 -91.77 -0.44 -2.98 16 5 H 0.14 1.34 6.48 -51.93 -0.34 1.00 16 6 C 0.54 9.52 7.07 -10.99 -0.08 9.44 16 7 O -0.51 -10.92 12.68 5.56 0.07 -10.85 16 8 N -0.59 -10.50 2.46 -175.06 -0.43 -10.93 16 9 C 0.25 5.64 5.16 -5.19 -0.03 5.62 16 10 C -0.53 -14.00 9.39 -34.44 -0.32 -14.33 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 14 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.11 1.52 5.00 -4.04 -0.02 1.50 16 19 C -0.05 -0.50 5.91 -29.52 -0.17 -0.68 16 20 C 0.22 2.55 15.43 -20.76 -0.32 2.23 16 21 N -0.44 -6.45 18.54 42.16 0.78 -5.67 16 22 C 0.22 3.02 5.14 -26.73 -0.14 2.88 16 23 F -0.15 -2.54 16.03 2.25 0.04 -2.50 16 24 F -0.16 -2.15 17.60 2.25 0.04 -2.11 16 25 H 0.08 1.16 7.26 -51.93 -0.38 0.78 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.28 6.22 -51.93 -0.32 0.96 16 28 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 29 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.10 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.07 0.88 6.64 -51.93 -0.34 0.53 16 33 H 0.11 0.81 7.45 -51.93 -0.39 0.43 16 34 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -31.68 307.74 -4.84 -36.52 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -3.80 Total: -3.13 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.88 Total: 2.22 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 1.09 Total: -41.01 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.08 Total: -4.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.68 -4.84 -36.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331795664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.014 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds