Wall clock time and date at job start Mon Mar 30 2020 01:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 115.55088 * 2 1 4 4 C 1.53004 * 117.49755 * 145.67508 * 2 1 3 5 5 H 1.08999 * 117.49337 * 214.97339 * 4 2 1 6 6 C 1.50696 * 117.50060 * 359.97438 * 4 2 1 7 7 O 1.21277 * 120.00021 * 359.97438 * 6 4 2 8 8 N 1.34773 * 120.00048 * 180.02562 * 6 4 2 9 9 C 1.46500 * 120.00349 * 179.97438 * 8 6 4 10 10 C 1.50703 * 109.46890 * 89.99351 * 9 8 6 11 11 H 1.07995 * 120.00455 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99370 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00286 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99752 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47015 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46908 * 119.99635 * 14 12 10 17 17 H 1.48497 * 109.47173 * 240.00003 * 14 12 10 18 18 C 1.46500 * 119.99884 * 359.97438 * 8 6 4 19 19 C 1.53003 * 109.46900 * 90.00670 * 18 8 6 20 20 C 1.47203 * 109.47402 * 180.02562 * 19 18 8 21 21 N 6.67825 * 138.19029 * 126.78357 * 2 1 3 22 22 C 1.53002 * 117.49773 * 214.29700 * 2 1 3 23 23 F 1.39905 * 117.49802 * 359.97438 * 22 2 1 24 24 F 1.39897 * 117.49756 * 145.01859 * 22 2 1 25 25 H 1.09001 * 109.47002 * 274.32394 * 1 2 3 26 26 H 1.08993 * 109.46955 * 34.32831 * 1 2 3 27 27 H 1.09000 * 109.47050 * 154.32660 * 1 2 3 28 28 H 1.08993 * 109.47283 * 209.99587 * 9 8 6 29 29 H 1.08998 * 109.46425 * 329.99731 * 9 8 6 30 30 H 0.96994 * 119.99701 * 180.02562 * 13 12 10 31 31 H 1.08996 * 109.47479 * 210.00363 * 18 8 6 32 32 H 1.09002 * 109.47199 * 330.01192 * 18 8 6 33 33 H 1.09005 * 109.47347 * 300.00233 * 19 18 8 34 34 H 1.08998 * 109.47104 * 59.99905 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1208 0.7653 5 1 3.1716 -0.8748 1.2684 6 6 1.3721 -2.1399 1.4619 7 8 0.1640 -2.0521 1.4030 8 7 1.9416 -3.1484 2.1511 9 6 1.1014 -4.1388 2.8287 10 6 0.8125 -5.2803 1.8881 11 1 1.2142 -5.2689 0.8857 12 6 0.0344 -6.3387 2.3071 13 7 -0.4552 -6.3523 3.5276 14 14 -0.3243 -7.7533 1.1410 15 1 0.3373 -7.4990 -0.1640 16 1 0.1952 -9.0174 1.7219 17 1 -1.7908 -7.8677 0.9380 18 6 3.4011 -3.2542 2.2226 19 6 3.9097 -2.4769 3.4384 20 6 5.3762 -2.5826 3.5101 21 7 6.5078 -2.6659 3.5657 22 6 2.2365 -1.1212 -0.7647 23 9 1.4340 -2.0682 -1.4100 24 9 3.4366 -0.8058 -1.4108 25 1 -0.3633 0.0775 1.0248 26 1 -0.3633 0.8486 -0.5795 27 1 -0.3633 -0.9262 -0.4452 28 1 1.6222 -4.5160 3.7087 29 1 0.1642 -3.6728 3.1331 30 1 -1.0023 -7.0970 3.8224 31 1 3.6853 -4.3022 2.3166 32 1 3.8404 -2.8384 1.3159 33 1 3.6255 -1.4288 3.3446 34 1 3.4703 -2.8926 4.3452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331795664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:26 Heat of formation + Delta-G solvation = -94.587385 kcal Electronic energy + Delta-G solvation = -21284.887361 eV Core-core repulsion = 17661.279492 eV Total energy + Delta-G solvation = -3623.607869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.74216 -48.42245 -41.05213 -38.17101 -37.33609 -36.49478 -34.84757 -32.19441 -30.15653 -28.93298 -25.92078 -25.34163 -23.50629 -22.20958 -19.88880 -19.09930 -18.84955 -18.35487 -17.78651 -17.59891 -17.20091 -16.72810 -15.99457 -15.66243 -15.60110 -15.07966 -15.06483 -14.65085 -14.60225 -14.35313 -14.30094 -13.72963 -13.66177 -13.56226 -13.27519 -13.17783 -12.99479 -12.91426 -12.71569 -12.55736 -12.19452 -11.95634 -11.67133 -11.58250 -10.94407 -10.59792 -10.42972 -9.51507 -8.19976 -6.31229 1.23624 1.36913 1.40289 1.50319 1.71080 1.84254 1.95996 2.15298 2.41116 2.49847 3.00812 3.12318 3.14343 3.44130 3.55318 3.80052 4.05346 4.09924 4.29274 4.47510 4.53811 4.59521 4.81898 4.97288 5.02954 5.04457 5.10677 5.32674 5.52126 5.60310 5.84785 6.11424 6.59978 6.66504 6.78818 7.29484 7.44213 8.86691 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.007374 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.391930 B = 3796.044717 C = 5049.965136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 H 0.184 0.816 4 C -0.189 4.189 5 H 0.187 0.813 6 C 0.529 3.471 7 O -0.557 6.557 8 N -0.591 5.591 9 C 0.261 3.739 10 C -0.541 4.541 11 H 0.047 0.953 12 C 0.015 3.985 13 N -0.922 5.922 14 Si 0.952 3.048 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.283 1.283 18 C 0.110 3.890 19 C -0.037 4.037 20 C 0.245 3.755 21 N -0.489 5.489 22 C 0.195 3.805 23 F -0.174 7.174 24 F -0.155 7.155 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.012 0.988 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.811 14.022 -3.801 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.105 4.105 3 H 0.201 0.799 4 C -0.210 4.210 5 H 0.204 0.796 6 C 0.316 3.684 7 O -0.436 6.436 8 N -0.322 5.322 9 C 0.141 3.859 10 C -0.579 4.579 11 H 0.065 0.935 12 C -0.184 4.184 13 N -0.562 5.562 14 Si 0.778 3.222 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.208 1.208 18 C -0.014 4.014 19 C -0.078 4.078 20 C -0.073 4.073 21 N -0.167 5.167 22 C 0.158 3.842 23 F -0.155 7.155 24 F -0.135 7.135 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.160 0.840 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.769 13.780 -3.654 16.236 hybrid contribution -0.738 -1.514 -0.638 1.801 sum 7.030 12.266 -4.292 14.775 Atomic orbital electron populations 1.21371 0.90774 1.02103 1.03429 1.23944 0.97904 0.95548 0.93116 0.79926 1.24038 1.04760 1.00293 0.91938 0.79576 1.19730 0.87758 0.81671 0.79193 1.90704 1.16165 1.75253 1.61454 1.48032 1.07033 1.26167 1.50926 1.18853 0.89995 0.85213 0.91874 1.21750 1.31778 1.05014 0.99391 0.93465 1.25637 0.95403 1.00730 0.96639 1.70005 1.35217 1.32782 1.18164 0.85595 0.77869 0.79519 0.79215 1.19805 1.19698 1.20850 1.21524 0.79289 1.02437 0.98186 1.19856 0.80196 1.05661 1.02050 1.29164 0.94927 0.91494 0.91683 1.81261 1.14513 1.10634 1.10281 1.20184 0.81502 0.95847 0.86702 1.93024 1.72613 1.66307 1.83540 1.93037 1.44770 1.92506 1.83207 0.90862 0.89610 0.94098 0.94302 0.97013 0.92495 0.89748 0.88555 0.83956 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.40 71.98 0.60 -2.33 16 2 C -0.09 -1.69 6.39 -10.79 -0.07 -1.76 16 3 H 0.18 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.19 -4.31 4.78 -11.54 -0.06 -4.37 16 5 H 0.19 2.49 6.48 -2.39 -0.02 2.47 16 6 C 0.53 18.35 7.07 87.66 0.62 18.97 16 7 O -0.56 -24.35 12.68 -3.02 -0.04 -24.39 16 8 N -0.59 -20.78 2.46 -826.17 -2.03 -22.81 16 9 C 0.26 12.29 5.16 85.63 0.44 12.74 16 10 C -0.54 -29.23 9.39 25.60 0.24 -28.99 16 11 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 12 C 0.02 0.85 5.46 84.66 0.46 1.31 16 13 N -0.92 -52.76 13.29 21.45 0.28 -52.47 16 14 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 C 0.11 2.70 5.00 86.38 0.43 3.13 16 19 C -0.04 -0.61 5.91 28.79 0.17 -0.44 16 20 C 0.24 5.13 15.43 89.44 1.38 6.51 16 21 N -0.49 -13.33 18.54 20.01 0.37 -12.96 16 22 C 0.19 5.02 5.14 30.60 0.16 5.18 16 23 F -0.17 -6.10 16.03 44.97 0.72 -5.38 16 24 F -0.15 -3.66 17.60 44.97 0.79 -2.87 16 25 H 0.07 1.97 7.26 -2.39 -0.02 1.95 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.04 1.33 6.22 -2.39 -0.01 1.31 16 28 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 29 H 0.01 0.64 7.42 -2.39 -0.02 0.62 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.10 1.96 6.64 -2.39 -0.02 1.95 16 33 H 0.14 1.46 7.45 -2.38 -0.02 1.44 16 34 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -72.49 307.74 7.64 -64.84 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 1.13 Total: 0.02 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 4.38 Total: 9.94 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -1.37 Total: -88.24 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.04 Total: -24.39 kcal Atomic # 9 Polarization: -9.76 SS G_CDS: 1.51 Total: -8.25 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.49 7.64 -64.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331795664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.743 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds