Wall clock time and date at job start Mon Mar 30 2020 01:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 115.55261 * 2 1 4 4 C 1.53005 * 117.49526 * 214.32945 * 2 1 3 5 5 H 1.09003 * 117.49665 * 144.99630 * 4 2 1 6 6 C 1.50701 * 117.49800 * 0.02562 * 4 2 1 7 7 O 1.21282 * 120.00027 * 359.97438 * 6 4 2 8 8 N 1.34775 * 119.99714 * 179.97438 * 6 4 2 9 9 C 1.46502 * 120.00005 * 179.97438 * 8 6 4 10 10 C 1.50701 * 109.47310 * 270.00108 * 9 8 6 11 11 H 1.07997 * 119.99940 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00037 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99860 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99877 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47306 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46804 * 120.00246 * 14 12 10 17 17 H 1.48498 * 109.47100 * 239.99886 * 14 12 10 18 18 C 1.46499 * 120.00337 * 359.97438 * 8 6 4 19 19 C 1.53000 * 109.46840 * 270.00307 * 18 8 6 20 20 C 1.47205 * 109.46792 * 180.02562 * 19 18 8 21 21 N 6.67823 * 138.17905 * 233.23134 * 2 1 3 22 22 C 1.52994 * 60.00026 * 252.51618 * 4 2 1 23 23 F 1.39900 * 117.50339 * 107.49271 * 22 4 2 24 24 F 1.39903 * 117.49543 * 252.51246 * 22 4 2 25 25 H 1.08996 * 109.47157 * 205.67215 * 1 2 3 26 26 H 1.09004 * 109.46430 * 325.66908 * 1 2 3 27 27 H 1.08999 * 109.46779 * 85.66115 * 1 2 3 28 28 H 1.08998 * 109.46888 * 29.99915 * 9 8 6 29 29 H 1.08994 * 109.47490 * 149.99977 * 9 8 6 30 30 H 0.97000 * 119.99433 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.47391 * 149.99977 * 18 8 6 32 32 H 1.09001 * 109.46813 * 30.00033 * 18 8 6 33 33 H 1.09001 * 109.47194 * 299.99493 * 19 18 8 34 34 H 1.08992 * 109.47399 * 59.99666 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 -0.7654 5 1 3.1713 -0.8747 -1.2690 6 6 1.3719 -2.1398 -1.4620 7 8 0.1637 -2.0524 -1.4023 8 7 1.9414 -3.1483 -2.1514 9 6 1.1010 -4.1392 -2.8281 10 6 0.8134 -5.2806 -1.8871 11 1 1.2166 -5.2692 -0.8853 12 6 0.0354 -6.3394 -2.3051 13 7 -0.4560 -6.3530 -3.5250 14 14 -0.3205 -7.7546 -1.1389 15 1 0.3427 -7.5002 0.1652 16 1 -1.7868 -7.8700 -0.9338 17 1 0.1989 -9.0182 -1.7208 18 6 3.4008 -3.2535 -2.2239 19 6 3.9083 -2.4763 -3.4402 20 6 5.3746 -2.5825 -3.5135 21 7 6.5069 -2.6655 -3.5672 22 6 2.2364 -1.1214 0.7645 23 9 1.4339 -2.0681 1.4102 24 9 3.4366 -0.8062 1.4106 25 1 -0.3633 -0.9262 0.4452 26 1 -0.3632 0.8487 0.5796 27 1 -0.3633 0.0777 -1.0247 28 1 0.1634 -3.6737 -3.1319 29 1 1.6213 -4.5165 -3.7084 30 1 -1.0030 -7.0981 -3.8191 31 1 3.6853 -4.3015 -2.3179 32 1 3.8406 -2.8375 -1.3175 33 1 3.4685 -2.8923 -4.3466 34 1 3.6238 -1.4283 -3.3463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331795666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:28 Heat of formation + Delta-G solvation = -75.593778 kcal Electronic energy + Delta-G solvation = -21283.977576 eV Core-core repulsion = 17661.193331 eV Total energy + Delta-G solvation = -3622.784245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.63290 -47.28711 -39.70925 -37.07001 -36.17571 -35.16333 -32.89736 -30.93251 -28.88274 -27.36636 -24.47097 -23.99685 -22.08078 -21.11585 -18.62353 -17.97393 -17.69023 -16.63836 -16.51439 -16.32343 -16.02609 -15.15794 -14.76701 -14.30289 -14.15713 -13.96947 -13.92710 -13.49597 -13.47257 -13.10752 -12.69180 -12.58057 -12.49066 -12.31319 -11.98719 -11.89526 -11.78680 -11.34220 -11.03990 -10.93576 -10.74172 -10.53613 -10.20514 -9.90701 -9.71119 -9.03512 -8.50708 -7.94952 -6.12517 -4.16939 2.44731 2.71367 2.77254 2.97668 3.27060 3.35179 3.37194 3.45597 3.66877 4.01313 4.14752 4.38198 4.51723 4.62337 4.83888 5.01432 5.10417 5.15361 5.23227 5.37320 5.47310 5.60037 5.75713 5.91787 6.02297 6.07032 6.58595 6.82816 7.26133 7.34525 7.53651 7.83874 8.10599 8.12935 8.70779 8.90086 9.49025 10.95656 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.007375 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.868985 B = 3795.607339 C = 5049.335466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 H 0.133 0.867 4 C -0.195 4.195 5 H 0.142 0.858 6 C 0.538 3.462 7 O -0.512 6.512 8 N -0.588 5.588 9 C 0.245 3.755 10 C -0.529 4.529 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.115 3.885 19 C -0.050 4.050 20 C 0.216 3.784 21 N -0.443 5.443 22 C 0.215 3.785 23 F -0.145 7.145 24 F -0.161 7.161 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.263 0.737 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 12.389 3.413 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.132 4.132 3 H 0.151 0.849 4 C -0.218 4.218 5 H 0.160 0.840 6 C 0.323 3.677 7 O -0.387 6.387 8 N -0.319 5.319 9 C 0.127 3.873 10 C -0.568 4.568 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.012 4.012 19 C -0.092 4.092 20 C -0.103 4.103 21 N -0.120 5.120 22 C 0.178 3.822 23 F -0.125 7.125 24 F -0.141 7.141 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.390 12.139 3.264 14.101 hybrid contribution -0.281 -1.010 0.731 1.278 sum 6.110 11.129 3.995 13.309 Atomic orbital electron populations 1.21426 0.89347 1.02836 1.03985 1.23696 0.98973 0.94278 0.96229 0.84920 1.24017 1.03668 1.01204 0.92883 0.84039 1.18956 0.87690 0.81276 0.79825 1.90717 1.13816 1.74056 1.60136 1.48162 1.05496 1.27014 1.51215 1.19413 0.90478 0.85307 0.92108 1.21449 1.32032 1.03807 0.99499 0.92221 1.24903 0.95353 0.98369 0.95271 1.69926 1.34457 1.31932 1.16904 0.86465 0.78261 0.81808 0.81074 1.19715 1.20829 1.20959 1.21351 0.82109 1.02156 0.95555 1.19901 0.81676 1.04054 1.03535 1.29097 0.95047 0.93019 0.93096 1.81238 1.12994 1.08952 1.08819 1.19852 0.81001 0.94766 0.86586 1.93082 1.71644 1.64928 1.82889 1.93027 1.45190 1.92626 1.83283 0.90209 0.92650 0.89781 0.93330 0.94480 0.92690 0.88419 0.90726 0.86291 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 8.40 37.16 0.31 -1.23 16 2 C -0.11 -1.30 6.39 -90.61 -0.58 -1.88 16 3 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.20 -2.54 4.78 -91.77 -0.44 -2.98 16 5 H 0.14 1.34 6.48 -51.93 -0.34 1.00 16 6 C 0.54 9.52 7.07 -10.99 -0.08 9.44 16 7 O -0.51 -10.92 12.68 5.56 0.07 -10.85 16 8 N -0.59 -10.50 2.46 -175.06 -0.43 -10.93 16 9 C 0.25 5.64 5.16 -5.19 -0.03 5.62 16 10 C -0.53 -14.00 9.39 -34.44 -0.32 -14.33 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 14 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.11 1.52 5.00 -4.04 -0.02 1.50 16 19 C -0.05 -0.50 5.91 -29.52 -0.17 -0.68 16 20 C 0.22 2.55 15.44 -20.74 -0.32 2.23 16 21 N -0.44 -6.45 18.54 42.18 0.78 -5.67 16 22 C 0.22 3.02 5.13 -26.73 -0.14 2.89 16 23 F -0.15 -2.54 16.03 2.25 0.04 -2.50 16 24 F -0.16 -2.15 17.60 2.25 0.04 -2.11 16 25 H 0.08 1.28 6.22 -51.93 -0.32 0.96 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.16 7.26 -51.93 -0.38 0.78 16 28 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 29 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.10 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.07 0.88 6.64 -51.93 -0.34 0.53 16 33 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.11 0.82 7.45 -51.93 -0.39 0.43 16 LS Contribution 307.75 15.07 4.64 4.64 Total: -1.00 -31.68 307.75 -4.84 -36.52 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -3.80 Total: -3.13 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.88 Total: 2.21 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 1.09 Total: -41.01 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.08 Total: -4.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.68 -4.84 -36.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331795666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.074 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds