Wall clock time and date at job start Mon Mar 30 2020 01:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 115.55261 * 2 1 4 4 C 1.53005 * 117.49526 * 214.32945 * 2 1 3 5 5 H 1.09003 * 117.49665 * 144.99630 * 4 2 1 6 6 C 1.50701 * 117.49800 * 0.02562 * 4 2 1 7 7 O 1.21282 * 120.00027 * 359.97438 * 6 4 2 8 8 N 1.34775 * 119.99714 * 179.97438 * 6 4 2 9 9 C 1.46502 * 120.00005 * 179.97438 * 8 6 4 10 10 C 1.50701 * 109.47310 * 270.00108 * 9 8 6 11 11 H 1.07997 * 119.99940 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00037 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99860 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99877 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47306 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46804 * 120.00246 * 14 12 10 17 17 H 1.48498 * 109.47100 * 239.99886 * 14 12 10 18 18 C 1.46499 * 120.00337 * 359.97438 * 8 6 4 19 19 C 1.53000 * 109.46840 * 270.00307 * 18 8 6 20 20 C 1.47205 * 109.46792 * 180.02562 * 19 18 8 21 21 N 6.67823 * 138.17905 * 233.23134 * 2 1 3 22 22 C 1.52994 * 60.00026 * 252.51618 * 4 2 1 23 23 F 1.39900 * 117.50339 * 107.49271 * 22 4 2 24 24 F 1.39903 * 117.49543 * 252.51246 * 22 4 2 25 25 H 1.08996 * 109.47157 * 205.67215 * 1 2 3 26 26 H 1.09004 * 109.46430 * 325.66908 * 1 2 3 27 27 H 1.08999 * 109.46779 * 85.66115 * 1 2 3 28 28 H 1.08998 * 109.46888 * 29.99915 * 9 8 6 29 29 H 1.08994 * 109.47490 * 149.99977 * 9 8 6 30 30 H 0.97000 * 119.99433 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.47391 * 149.99977 * 18 8 6 32 32 H 1.09001 * 109.46813 * 30.00033 * 18 8 6 33 33 H 1.09001 * 109.47194 * 299.99493 * 19 18 8 34 34 H 1.08992 * 109.47399 * 59.99666 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 -0.7654 5 1 3.1713 -0.8747 -1.2690 6 6 1.3719 -2.1398 -1.4620 7 8 0.1637 -2.0524 -1.4023 8 7 1.9414 -3.1483 -2.1514 9 6 1.1010 -4.1392 -2.8281 10 6 0.8134 -5.2806 -1.8871 11 1 1.2166 -5.2692 -0.8853 12 6 0.0354 -6.3394 -2.3051 13 7 -0.4560 -6.3530 -3.5250 14 14 -0.3205 -7.7546 -1.1389 15 1 0.3427 -7.5002 0.1652 16 1 -1.7868 -7.8700 -0.9338 17 1 0.1989 -9.0182 -1.7208 18 6 3.4008 -3.2535 -2.2239 19 6 3.9083 -2.4763 -3.4402 20 6 5.3746 -2.5825 -3.5135 21 7 6.5069 -2.6655 -3.5672 22 6 2.2364 -1.1214 0.7645 23 9 1.4339 -2.0681 1.4102 24 9 3.4366 -0.8062 1.4106 25 1 -0.3633 -0.9262 0.4452 26 1 -0.3632 0.8487 0.5796 27 1 -0.3633 0.0777 -1.0247 28 1 0.1634 -3.6737 -3.1319 29 1 1.6213 -4.5165 -3.7084 30 1 -1.0030 -7.0981 -3.8191 31 1 3.6853 -4.3015 -2.3179 32 1 3.8406 -2.8375 -1.3175 33 1 3.4685 -2.8923 -4.3466 34 1 3.6238 -1.4283 -3.3463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331795666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:27 Heat of formation + Delta-G solvation = -94.654720 kcal Electronic energy + Delta-G solvation = -21284.804120 eV Core-core repulsion = 17661.193331 eV Total energy + Delta-G solvation = -3623.610789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.74256 -48.42181 -41.05157 -38.16631 -37.33256 -36.49237 -34.84767 -32.19385 -30.15641 -28.93297 -25.92083 -25.34215 -23.50637 -22.20968 -19.88867 -19.09926 -18.84970 -18.35506 -17.78702 -17.59880 -17.20097 -16.72804 -15.99392 -15.66100 -15.60086 -15.07955 -15.06452 -14.65057 -14.60086 -14.35228 -14.30088 -13.72972 -13.66237 -13.55937 -13.27500 -13.17824 -12.99429 -12.91381 -12.71510 -12.55735 -12.19454 -11.95577 -11.67115 -11.58209 -10.94450 -10.59793 -10.42974 -9.51527 -8.19989 -6.31236 1.23594 1.36913 1.40276 1.50334 1.70748 1.83985 1.96015 2.15272 2.41128 2.49852 3.00768 3.12324 3.14308 3.44070 3.55347 3.80018 4.05291 4.09886 4.29275 4.47516 4.53796 4.59513 4.81858 4.97279 5.02950 5.04447 5.10657 5.32667 5.52124 5.60299 5.84771 6.11423 6.59967 6.66480 6.78809 7.29473 7.44202 8.86685 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.007375 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.868985 B = 3795.607339 C = 5049.335466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 H 0.184 0.816 4 C -0.189 4.189 5 H 0.187 0.813 6 C 0.529 3.471 7 O -0.557 6.557 8 N -0.591 5.591 9 C 0.261 3.739 10 C -0.540 4.540 11 H 0.047 0.953 12 C 0.015 3.985 13 N -0.922 5.922 14 Si 0.952 3.048 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.110 3.890 19 C -0.037 4.037 20 C 0.245 3.755 21 N -0.489 5.489 22 C 0.195 3.805 23 F -0.174 7.174 24 F -0.155 7.155 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 14.026 3.788 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.105 4.105 3 H 0.201 0.799 4 C -0.210 4.210 5 H 0.204 0.796 6 C 0.316 3.684 7 O -0.436 6.436 8 N -0.322 5.322 9 C 0.141 3.859 10 C -0.579 4.579 11 H 0.065 0.935 12 C -0.184 4.184 13 N -0.562 5.562 14 Si 0.778 3.222 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.014 4.014 19 C -0.078 4.078 20 C -0.073 4.073 21 N -0.167 5.167 22 C 0.158 3.842 23 F -0.155 7.155 24 F -0.135 7.135 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.767 13.784 3.644 16.236 hybrid contribution -0.736 -1.515 0.637 1.801 sum 7.031 12.269 4.281 14.774 Atomic orbital electron populations 1.21372 0.90774 1.02103 1.03428 1.23944 0.97905 0.95546 0.93121 0.79925 1.24038 1.04763 1.00294 0.91933 0.79572 1.19734 0.87759 0.81671 0.79190 1.90706 1.16165 1.75255 1.61450 1.48031 1.07031 1.26143 1.50948 1.18853 0.89995 0.85204 0.91886 1.21748 1.31754 1.04999 0.99429 0.93467 1.25635 0.95400 1.00734 0.96642 1.70008 1.35182 1.32763 1.18215 0.85594 0.77867 0.79518 0.79212 1.19805 1.20851 1.19699 1.21525 0.79293 1.02439 0.98180 1.19854 0.80195 1.05662 1.02040 1.29188 0.94929 0.91486 0.91674 1.81284 1.14473 1.10646 1.10297 1.20182 0.81495 0.95851 0.86702 1.93022 1.72614 1.66329 1.83516 1.93038 1.44768 1.92512 1.83209 0.94096 0.89612 0.90862 0.97009 0.94304 0.92498 0.89748 0.88557 0.85703 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.40 71.98 0.60 -2.33 16 2 C -0.09 -1.70 6.39 -10.79 -0.07 -1.76 16 3 H 0.18 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.19 -4.31 4.78 -11.54 -0.06 -4.36 16 5 H 0.19 2.49 6.48 -2.39 -0.02 2.47 16 6 C 0.53 18.34 7.07 87.66 0.62 18.96 16 7 O -0.56 -24.35 12.68 -3.04 -0.04 -24.39 16 8 N -0.59 -20.77 2.46 -826.16 -2.03 -22.80 16 9 C 0.26 12.29 5.16 85.63 0.44 12.73 16 10 C -0.54 -29.23 9.39 25.60 0.24 -28.99 16 11 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 12 C 0.02 0.85 5.46 84.65 0.46 1.31 16 13 N -0.92 -52.76 13.29 21.45 0.28 -52.48 16 14 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 C 0.11 2.70 5.00 86.38 0.43 3.13 16 19 C -0.04 -0.61 5.91 28.79 0.17 -0.44 16 20 C 0.24 5.12 15.44 89.44 1.38 6.50 16 21 N -0.49 -13.34 18.54 20.01 0.37 -12.97 16 22 C 0.19 5.02 5.13 30.59 0.16 5.18 16 23 F -0.17 -6.10 16.03 44.97 0.72 -5.38 16 24 F -0.15 -3.66 17.60 44.97 0.79 -2.87 16 25 H 0.04 1.33 6.22 -2.39 -0.01 1.31 16 26 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.07 1.97 7.26 -2.39 -0.02 1.95 16 28 H 0.01 0.64 7.42 -2.39 -0.02 0.62 16 29 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.10 1.96 6.64 -2.39 -0.02 1.95 16 33 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.14 1.46 7.45 -2.39 -0.02 1.44 16 Total: -1.00 -72.50 307.75 7.64 -64.86 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 1.13 Total: 0.01 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 4.38 Total: 9.93 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -1.37 Total: -88.25 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.04 Total: -24.39 kcal Atomic # 9 Polarization: -9.76 SS G_CDS: 1.51 Total: -8.25 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.50 7.64 -64.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331795666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.798 kcal (2) G-P(sol) polarization free energy of solvation -72.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds