Wall clock time and date at job start Mon Mar 30 2020 01:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47390 * 2 1 4 4 C 1.50702 * 109.46842 * 240.00647 * 2 1 3 5 5 H 1.07997 * 119.99920 * 275.00267 * 4 2 1 6 6 C 1.37873 * 120.00163 * 95.00265 * 4 2 1 7 7 N 1.31517 * 119.99961 * 184.92080 * 6 4 2 8 8 Si 1.86803 * 119.99950 * 4.91075 * 6 4 2 9 9 H 1.48501 * 109.46814 * 84.83837 * 8 6 4 10 10 H 1.48506 * 109.47175 * 204.83357 * 8 6 4 11 11 H 1.48501 * 109.47257 * 324.83581 * 8 6 4 12 12 N 1.46494 * 109.47458 * 120.00695 * 2 1 3 13 13 C 1.34776 * 120.00010 * 275.00119 * 12 2 1 14 14 O 1.21495 * 119.99847 * 359.97438 * 13 12 2 15 15 C 1.48339 * 120.00465 * 179.97438 * 13 12 2 16 16 C 1.40275 * 119.25858 * 180.20288 * 15 13 12 17 17 C 1.36474 * 119.79374 * 180.23643 * 16 15 13 18 18 C 1.40859 * 118.30100 * 359.54543 * 17 16 15 19 19 N 1.33652 * 121.07915 * 180.27220 * 18 17 16 20 20 C 1.31325 * 119.70631 * 180.02562 * 19 18 17 21 21 C 1.39853 * 120.60924 * 359.95335 * 20 19 18 22 22 N 1.31226 * 120.78188 * 0.03067 * 21 20 19 23 23 C 1.34023 * 119.80352 * 359.97438 * 22 21 20 24 24 N 1.31858 * 119.24976 * 359.97438 * 15 13 12 25 25 H 1.08999 * 109.47347 * 175.03259 * 1 2 3 26 26 H 1.09008 * 109.47014 * 295.03357 * 1 2 3 27 27 H 1.09004 * 109.47464 * 55.02805 * 1 2 3 28 28 H 0.97005 * 119.99918 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00264 * 94.99405 * 12 2 1 30 30 H 1.08011 * 120.10612 * 0.05125 * 16 15 13 31 31 H 1.08001 * 120.85268 * 179.81658 * 17 16 15 32 32 H 1.08002 * 119.69909 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.61055 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1353 -1.7853 -1.2293 6 6 2.3602 0.0123 -2.3581 7 7 2.7057 -0.6129 -3.4623 8 14 2.3135 1.8793 -2.3173 9 1 3.5991 2.3950 -1.7821 10 1 2.1057 2.3994 -3.6927 11 1 1.1985 2.3276 -1.4448 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8585 1.1604 2.4116 15 6 2.6411 -0.7180 3.5683 16 6 2.7650 -0.0042 4.7696 17 6 3.2230 -0.6357 5.8894 18 6 3.5499 -2.0028 5.7986 19 7 3.9981 -2.6771 6.8620 20 6 4.2954 -3.9510 6.7469 21 6 4.1464 -4.6092 5.5219 22 7 3.7078 -3.9682 4.4641 23 6 3.3974 -2.6675 4.5546 24 7 2.9495 -1.9977 3.4926 25 1 -0.3634 -1.0238 -0.0890 26 1 -0.3633 0.4349 0.9312 27 1 -0.3634 0.5890 -0.8421 28 1 2.9361 -0.1045 -4.2557 29 1 2.2490 -1.6319 1.1524 30 1 2.5016 1.0426 4.8074 31 1 3.3278 -0.1020 6.8224 32 1 4.6580 -4.4957 7.6061 33 1 4.3953 -5.6573 5.4455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339275172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:38 Heat of formation + Delta-G solvation = 24.600139 kcal Electronic energy + Delta-G solvation = -19680.829917 eV Core-core repulsion = 16513.079593 eV Total energy + Delta-G solvation = -3167.750324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.81335 -40.98022 -39.07752 -36.86053 -36.16668 -34.48329 -33.24250 -32.46622 -31.32480 -27.52548 -27.33935 -25.96914 -24.30376 -23.31186 -21.55952 -20.64074 -19.96058 -18.93159 -18.54914 -17.76839 -17.20374 -16.84203 -16.21449 -15.91279 -15.83852 -15.43748 -15.20345 -14.68542 -14.52886 -14.30597 -13.83310 -13.64491 -13.28488 -13.06247 -13.04013 -12.83675 -12.82092 -12.49831 -12.04071 -11.87260 -11.28736 -11.17504 -10.85666 -10.55276 -10.32843 -9.92732 -9.89644 -8.40498 -6.48784 -1.26767 -0.82098 0.66646 1.13925 1.30730 1.33959 1.45015 1.99436 2.07471 2.26466 2.40621 2.84981 2.88584 2.94036 2.99718 3.43323 3.64487 3.71005 3.91099 4.11471 4.36308 4.38538 4.57335 4.64813 4.70912 4.76981 4.93295 5.02313 5.28240 5.32022 5.41077 5.58909 5.77047 6.05569 6.28305 6.54676 6.64704 6.78839 7.09258 7.22571 8.74825 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.004440 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.609045 B = 6304.511133 C = 6851.107074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.231 3.769 3 H 0.041 0.959 4 C -0.533 4.533 5 H 0.049 0.951 6 C 0.032 3.968 7 N -0.930 5.930 8 Si 0.931 3.069 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.249 1.249 12 N -0.681 5.681 13 C 0.552 3.448 14 O -0.566 6.566 15 C 0.137 3.863 16 C -0.115 4.115 17 C -0.018 4.018 18 C 0.025 3.975 19 N -0.432 5.432 20 C 0.104 3.896 21 C 0.121 3.879 22 N -0.457 5.457 23 C 0.227 3.773 24 N -0.456 5.456 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.272 0.728 29 H 0.408 0.592 30 H 0.177 0.823 31 H 0.195 0.805 32 H 0.238 0.762 33 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 -5.351 24.319 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.128 3.872 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.068 0.932 6 C -0.168 4.168 7 N -0.568 5.568 8 Si 0.755 3.245 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.172 1.172 12 N -0.328 5.328 13 C 0.336 3.664 14 O -0.445 6.445 15 C -0.020 4.020 16 C -0.138 4.138 17 C -0.045 4.045 18 C -0.100 4.100 19 N -0.146 5.146 20 C -0.075 4.075 21 C -0.061 4.061 22 N -0.172 5.172 23 C -0.013 4.013 24 N -0.169 5.169 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.244 0.756 30 H 0.194 0.806 31 H 0.212 0.788 32 H 0.254 0.746 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.728 -4.751 23.174 23.812 hybrid contribution 0.284 0.474 -0.167 0.577 sum 3.012 -4.277 23.006 23.593 Atomic orbital electron populations 1.22116 0.96431 1.01352 1.00103 1.19074 0.92492 0.93324 0.82282 0.94116 1.21153 1.45047 0.94630 0.96279 0.93242 1.25682 0.93353 1.03098 0.94693 1.69994 1.46212 1.38060 1.02506 0.85986 0.80023 0.80440 0.78074 1.19799 1.19938 1.17225 1.46474 1.62483 1.14829 1.09039 1.18293 0.78621 0.86161 0.83296 1.90710 1.52942 1.15742 1.85147 1.21536 0.96129 0.89294 0.95008 1.22065 0.97744 1.03397 0.90557 1.21655 0.91870 0.90696 1.00243 1.20549 1.00798 0.97261 0.91358 1.68772 1.08131 1.09823 1.27876 1.25263 0.91828 0.90097 1.00264 1.25262 0.89748 1.03525 0.87519 1.68344 1.09521 1.06071 1.33291 1.20086 0.99221 0.92439 0.89534 1.67237 1.09963 1.08331 1.31419 0.92775 0.93834 0.92486 0.91867 0.75646 0.80555 0.78809 0.74573 0.75264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.24 9.47 71.98 0.68 -5.56 16 2 C 0.23 11.42 2.22 44.25 0.10 11.52 16 3 H 0.04 2.12 4.73 -2.39 -0.01 2.10 16 4 C -0.53 -30.22 9.05 25.60 0.23 -29.99 16 5 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 6 C 0.03 1.86 5.47 84.65 0.46 2.33 16 7 N -0.93 -56.68 13.96 21.45 0.30 -56.38 16 8 Si 0.93 44.71 26.99 68.60 1.85 46.56 16 9 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.25 -11.41 6.82 99.48 0.68 -10.73 16 12 N -0.68 -30.44 5.06 -448.52 -2.27 -32.71 16 13 C 0.55 22.74 7.78 86.93 0.68 23.42 16 14 O -0.57 -25.11 15.95 -3.70 -0.06 -25.17 16 15 C 0.14 4.67 6.75 42.33 0.29 4.96 16 16 C -0.12 -2.95 9.54 22.35 0.21 -2.74 16 17 C -0.02 -0.37 10.10 22.50 0.23 -0.14 16 18 C 0.02 0.59 6.60 40.41 0.27 0.86 16 19 N -0.43 -7.84 10.46 -187.71 -1.96 -9.81 16 20 C 0.10 1.06 11.22 85.16 0.96 2.01 16 21 C 0.12 1.60 11.21 85.17 0.95 2.56 16 22 N -0.46 -12.08 10.55 -193.20 -2.04 -14.12 16 23 C 0.23 6.86 7.60 135.09 1.03 7.88 16 24 N -0.46 -16.19 9.56 -182.84 -1.75 -17.94 16 25 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 29 H 0.41 17.98 7.90 -92.71 -0.73 17.25 16 30 H 0.18 3.93 7.61 -2.90 -0.02 3.91 16 31 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.24 -0.36 8.06 -2.91 -0.02 -0.38 16 33 H 0.23 0.61 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -77.87 295.76 0.56 -77.31 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.40 Total: 15.15 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 6.08 Total: 17.10 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -7.72 Total: -130.96 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.06 Total: -25.17 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.85 Total: 46.56 kcal Total: -77.87 0.56 -77.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339275172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.913 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds