Wall clock time and date at job start Mon Mar 30 2020 01:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47378 * 2 1 4 4 C 1.50703 * 109.47270 * 120.00106 * 2 1 3 5 5 H 1.07999 * 120.00013 * 120.00349 * 4 2 1 6 6 C 1.37876 * 119.99762 * 299.99880 * 4 2 1 7 7 N 1.31511 * 119.99857 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47125 * 59.99891 * 8 6 4 10 10 H 1.48497 * 109.47254 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47087 * 300.00512 * 8 6 4 12 12 N 1.46504 * 109.47134 * 239.99974 * 2 1 3 13 13 C 1.34775 * 120.00189 * 84.99955 * 12 2 1 14 14 O 1.21497 * 119.99742 * 359.97438 * 13 12 2 15 15 C 1.48337 * 120.00344 * 179.97438 * 13 12 2 16 16 C 1.40284 * 119.25397 * 179.97438 * 15 13 12 17 17 C 1.36473 * 119.78848 * 179.97438 * 16 15 13 18 18 C 1.40855 * 118.30595 * 359.97438 * 17 16 15 19 19 N 1.33654 * 121.08057 * 180.02562 * 18 17 16 20 20 C 1.31323 * 119.70826 * 179.97438 * 19 18 17 21 21 C 1.39848 * 120.61030 * 0.28318 * 20 19 18 22 22 N 1.31235 * 120.78312 * 359.46699 * 21 20 19 23 23 C 1.34022 * 119.80352 * 0.47501 * 22 21 20 24 24 N 1.31850 * 119.25111 * 359.97438 * 15 13 12 25 25 H 1.08995 * 109.47314 * 60.00321 * 1 2 3 26 26 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47581 * 299.99771 * 1 2 3 28 28 H 0.97008 * 119.99564 * 180.02562 * 7 6 4 29 29 H 0.97005 * 120.00130 * 264.99943 * 12 2 1 30 30 H 1.07995 * 120.10267 * 0.02562 * 16 15 13 31 31 H 1.08005 * 120.84946 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.69146 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.60801 * 179.69394 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8260 -0.4206 5.2204 11 1 1.8258 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8576 1.1604 -2.4119 15 6 2.6420 -0.7174 -3.5682 16 6 2.7694 -0.0026 -4.7685 17 6 3.2242 -0.6348 -5.8892 18 6 3.5542 -2.0011 -5.7978 19 7 4.0052 -2.6746 -6.8606 20 6 4.3052 -3.9478 -6.7449 21 6 4.1517 -4.6073 -5.5212 22 7 3.7152 -3.9659 -4.4627 23 6 3.4028 -2.6658 -4.5534 24 7 2.9523 -1.9966 -3.4921 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 0.7087 1.1612 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 2.5092 1.0449 -4.8053 31 1 3.3286 -0.1011 -6.8224 32 1 4.6692 -4.4919 -7.6039 33 1 4.3986 -5.6559 -5.4455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339275246.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:40 Heat of formation + Delta-G solvation = 26.018972 kcal Electronic energy + Delta-G solvation = -19611.791683 eV Core-core repulsion = 16444.102884 eV Total energy + Delta-G solvation = -3167.688799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.80803 -40.93726 -39.05101 -36.85171 -36.16553 -34.45777 -33.14613 -32.37762 -30.78958 -27.50571 -27.32291 -25.96275 -24.30507 -23.43872 -21.60749 -20.58337 -19.85968 -18.73562 -18.45020 -17.51374 -17.16764 -16.84092 -16.27544 -15.92033 -15.79286 -15.44275 -15.23294 -14.57055 -14.43808 -13.92774 -13.68005 -13.58317 -13.07609 -13.03941 -12.88716 -12.83303 -12.77265 -12.31519 -12.18864 -12.02358 -11.18815 -11.11660 -10.62606 -10.55070 -10.31796 -9.89904 -9.86243 -8.20149 -6.37640 -1.26456 -0.81844 0.67242 1.15432 1.43790 1.46144 1.54103 2.02228 2.09446 2.36008 2.50781 2.85046 2.89079 2.95129 3.10012 3.44362 3.65035 3.71699 3.91556 4.11993 4.36945 4.56939 4.63291 4.72920 4.88634 4.93284 5.02681 5.29978 5.35042 5.50720 5.61058 5.75064 5.85276 6.04122 6.28436 6.65160 6.66669 6.82520 7.17968 7.36432 8.86123 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.004261 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.513682 B = 6570.108980 C = 7376.643796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.267 3.733 3 H 0.011 0.989 4 C -0.553 4.553 5 H 0.066 0.934 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.973 3.027 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.266 1.266 12 N -0.681 5.681 13 C 0.550 3.450 14 O -0.570 6.570 15 C 0.139 3.861 16 C -0.117 4.117 17 C -0.017 4.017 18 C 0.024 3.976 19 N -0.432 5.432 20 C 0.104 3.896 21 C 0.122 3.878 22 N -0.455 5.455 23 C 0.228 3.772 24 N -0.455 5.455 25 H 0.018 0.982 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.268 0.732 29 H 0.407 0.593 30 H 0.174 0.826 31 H 0.195 0.805 32 H 0.238 0.762 33 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -11.029 -20.699 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.029 0.971 4 C -0.591 4.591 5 H 0.084 0.916 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.191 1.191 12 N -0.328 5.328 13 C 0.334 3.666 14 O -0.449 6.449 15 C -0.017 4.017 16 C -0.139 4.139 17 C -0.044 4.044 18 C -0.100 4.100 19 N -0.146 5.146 20 C -0.075 4.075 21 C -0.060 4.060 22 N -0.171 5.171 23 C -0.012 4.012 24 N -0.168 5.168 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.243 0.757 30 H 0.191 0.809 31 H 0.212 0.788 32 H 0.254 0.746 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.653 -10.315 -19.614 23.138 hybrid contribution 0.220 -0.103 0.511 0.566 sum 6.873 -10.418 -19.102 22.818 Atomic orbital electron populations 1.21906 0.97679 0.99522 1.00163 1.18551 0.91582 0.92260 0.81162 0.97079 1.21457 1.33051 1.13684 0.90939 0.91550 1.25745 0.94711 0.95557 1.02075 1.70021 1.36582 1.23657 1.24871 0.85389 0.78625 0.78686 0.77600 1.19699 1.20567 1.19115 1.46331 1.62471 1.14601 1.09404 1.18316 0.78762 0.86128 0.83436 1.90722 1.52916 1.16156 1.85128 1.21501 0.96033 0.89320 0.94874 1.22048 0.97867 1.03336 0.90698 1.21641 0.91836 0.90788 1.00113 1.20534 1.00844 0.97187 0.91440 1.68769 1.08111 1.09909 1.27831 1.25272 0.91842 0.90061 1.00301 1.25276 0.89686 1.03532 0.87471 1.68347 1.09556 1.05917 1.33245 1.20089 0.99142 0.92488 0.89493 1.67224 1.09984 1.08173 1.31429 0.96306 0.94445 0.90774 0.92288 0.75699 0.80895 0.78831 0.74561 0.75137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.03 9.26 71.98 0.67 -6.36 16 2 C 0.27 14.55 2.56 44.24 0.11 14.67 16 3 H 0.01 0.70 7.58 -2.39 -0.02 0.68 16 4 C -0.55 -30.86 8.73 25.60 0.22 -30.64 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -52.89 11.32 21.45 0.24 -52.65 16 8 Si 0.97 43.27 29.54 68.60 2.03 45.29 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 N -0.68 -32.06 5.06 -448.50 -2.27 -34.33 16 13 C 0.55 24.26 7.78 86.93 0.68 24.94 16 14 O -0.57 -27.90 15.95 -3.71 -0.06 -27.96 16 15 C 0.14 4.96 6.75 42.33 0.29 5.25 16 16 C -0.12 -3.19 9.54 22.35 0.21 -2.98 16 17 C -0.02 -0.36 10.10 22.50 0.23 -0.14 16 18 C 0.02 0.59 6.60 40.41 0.27 0.86 16 19 N -0.43 -7.91 10.46 -187.70 -1.96 -9.88 16 20 C 0.10 1.04 11.22 85.16 0.96 1.99 16 21 C 0.12 1.56 11.21 85.17 0.95 2.51 16 22 N -0.46 -11.81 10.55 -193.18 -2.04 -13.85 16 23 C 0.23 6.90 7.60 135.10 1.03 7.92 16 24 N -0.45 -16.33 9.56 -182.83 -1.75 -18.08 16 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.07 4.17 6.07 -2.39 -0.01 4.15 16 28 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 29 H 0.41 18.15 7.85 -92.70 -0.73 17.42 16 30 H 0.17 4.26 7.60 -2.91 -0.02 4.24 16 31 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.24 -0.40 8.06 -2.91 -0.02 -0.43 16 33 H 0.23 0.45 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -76.67 296.00 0.69 -75.99 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.44 Total: 15.91 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.06 Total: 19.55 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -7.77 Total: -128.78 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.06 Total: -27.96 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -76.67 0.69 -75.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339275246.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.005 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds