Wall clock time and date at job start Mon Mar 30 2020 01:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36875 * 119.99717 * 2 1 4 4 H 1.08006 * 119.99260 * 153.97442 * 3 2 1 5 5 C 1.39048 * 120.00338 * 333.97796 * 3 2 1 6 6 N 1.31359 * 119.99808 * 349.57713 * 5 3 2 7 7 Si 1.86793 * 119.99973 * 169.57493 * 5 3 2 8 8 H 1.48504 * 109.47160 * 60.00113 * 7 5 3 9 9 H 1.48493 * 109.47310 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47486 * 300.00116 * 7 5 3 11 11 C 1.34776 * 120.00001 * 180.02562 * 2 1 3 12 12 O 1.21595 * 119.99942 * 186.00383 * 11 2 1 13 13 C 1.47731 * 120.00184 * 6.00185 * 11 2 1 14 14 C 1.39694 * 120.12041 * 214.91954 * 13 11 2 15 15 C 1.37950 * 119.97781 * 180.02562 * 14 13 11 16 16 C 1.38277 * 120.22234 * 0.02562 * 15 14 13 17 17 C 1.38915 * 120.24445 * 359.95651 * 16 15 14 18 18 N 1.40272 * 119.99431 * 180.02562 * 17 16 15 19 19 C 1.36113 * 125.94362 * 4.71116 * 18 17 16 20 20 C 1.35370 * 106.05168 * 179.85076 * 19 18 17 21 21 N 1.33765 * 106.54000 * 0.40672 * 20 19 18 22 22 N 1.28610 * 109.06088 * 359.74229 * 21 20 19 23 23 C 1.38563 * 120.01794 * 0.29618 * 17 16 15 24 24 H 1.09001 * 109.47357 * 204.94014 * 1 2 3 25 25 H 1.09005 * 109.47368 * 324.93823 * 1 2 3 26 26 H 1.09001 * 109.47855 * 84.93606 * 1 2 3 27 27 H 0.97005 * 119.99686 * 179.97438 * 6 5 3 28 28 H 1.08003 * 120.00681 * 359.97438 * 14 13 11 29 29 H 1.07999 * 119.88635 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.88007 * 179.97438 * 16 15 14 31 31 H 1.08005 * 126.97098 * 0.02562 * 19 18 17 32 32 H 1.08003 * 126.72524 * 180.12006 * 20 19 18 33 33 H 1.08001 * 120.11244 * 179.73044 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1472 1.2327 0.4104 5 6 1.5598 2.3286 -0.5283 6 7 0.4397 2.2356 -1.2082 7 14 2.3606 3.9964 -0.2710 8 1 3.7222 3.9884 -0.8636 9 1 1.5412 5.0457 -0.9289 10 1 2.4554 4.2811 1.1834 11 6 2.1388 -1.1672 -0.0005 12 8 3.3498 -1.1701 0.1096 13 6 1.4063 -2.4430 -0.1349 14 6 1.8517 -3.5817 0.5408 15 6 1.1658 -4.7716 0.4129 16 6 0.0374 -4.8424 -0.3832 17 6 -0.4140 -3.7158 -1.0590 18 7 -1.5596 -3.7934 -1.8648 19 6 -2.3693 -4.8791 -1.9999 20 6 -3.3450 -4.5131 -2.8639 21 7 -3.0866 -3.2490 -3.2169 22 7 -2.0248 -2.8520 -2.6095 23 6 0.2704 -2.5166 -0.9418 24 1 -0.3634 -0.9318 0.4333 25 1 -0.3634 0.8412 0.5904 26 1 -0.3635 0.0907 -1.0236 27 1 0.0282 3.0332 -1.5764 28 1 2.7334 -3.5305 1.1625 29 1 1.5117 -5.6511 0.9356 30 1 -0.4952 -5.7770 -0.4798 31 1 -2.2576 -5.8372 -1.5140 32 1 -4.1679 -5.1238 -3.2052 33 1 -0.0767 -1.6408 -1.4700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339399946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:58 Heat of formation + Delta-G solvation = 119.340335 kcal Electronic energy + Delta-G solvation = -20190.714599 eV Core-core repulsion = 17027.072518 eV Total energy + Delta-G solvation = -3163.642081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.37541 -39.73678 -37.82715 -34.93358 -34.34962 -32.19904 -31.34180 -30.51549 -29.76838 -26.44743 -25.20465 -24.13524 -23.54659 -21.94093 -21.23321 -19.81117 -17.91759 -17.01828 -16.42588 -16.26256 -16.12758 -15.36756 -15.02502 -14.59406 -14.24420 -14.10426 -13.96077 -13.35600 -12.98317 -12.68103 -12.05552 -11.90001 -11.64797 -11.60362 -11.32432 -11.08116 -10.97346 -10.91925 -10.76547 -10.47678 -10.39464 -9.48363 -9.13065 -8.89318 -8.60890 -8.49880 -7.77553 -6.42397 -3.99741 0.65235 1.16237 2.01206 2.28250 2.55911 3.14019 3.20844 3.24024 3.47032 4.03828 4.15776 4.32461 4.48662 4.69953 4.84329 4.93719 5.03564 5.10341 5.20422 5.33000 5.46118 5.56864 5.65243 5.93190 6.02693 6.20609 6.32518 6.33102 6.51576 6.61875 6.75189 6.94126 7.14252 7.45649 8.01363 8.35233 8.48285 9.04664 9.25412 9.82362 10.59736 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.005676 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.320974 B = 4931.745073 C = 6138.632185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.423 5.423 3 C -0.310 4.310 4 H 0.102 0.898 5 C 0.034 3.966 6 N -0.870 5.870 7 Si 0.932 3.068 8 H -0.270 1.270 9 H -0.282 1.282 10 H -0.272 1.272 11 C 0.471 3.529 12 O -0.584 6.584 13 C -0.073 4.073 14 C -0.069 4.069 15 C -0.109 4.109 16 C -0.117 4.117 17 C 0.103 3.897 18 N -0.233 5.233 19 C -0.055 4.055 20 C -0.050 4.050 21 N -0.269 5.269 22 N -0.068 5.068 23 C -0.078 4.078 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.273 0.727 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.191 0.809 32 H 0.192 0.808 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 -14.523 2.046 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.139 5.139 3 C -0.438 4.438 4 H 0.120 0.880 5 C -0.171 4.171 6 N -0.507 5.507 7 Si 0.758 3.242 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.259 3.741 12 O -0.470 6.470 13 C -0.077 4.077 14 C -0.089 4.089 15 C -0.128 4.128 16 C -0.139 4.139 17 C 0.013 3.987 18 N -0.021 5.021 19 C -0.204 4.204 20 C -0.206 4.206 21 N -0.135 5.135 22 N -0.046 5.046 23 C -0.099 4.099 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.208 0.792 32 H 0.209 0.791 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.741 -12.852 1.469 14.153 hybrid contribution -0.074 -0.405 0.383 0.562 sum -5.815 -13.258 1.852 14.595 Atomic orbital electron populations 1.21876 0.81045 0.98680 1.02611 1.43487 1.05636 1.04763 1.60038 1.19651 1.01535 0.84418 1.38161 0.88011 1.25475 0.96424 1.00446 0.94739 1.69934 1.18494 1.30527 1.31753 0.85906 0.79179 0.80353 0.78763 1.19555 1.20751 1.19715 1.17809 0.87129 0.82920 0.86192 1.90624 1.13348 1.86526 1.56542 1.20352 0.94156 0.96453 0.96770 1.21465 0.99049 0.91216 0.97190 1.20891 0.94739 0.98225 0.98902 1.20841 0.98237 0.96311 0.98467 1.17546 0.87600 0.96463 0.97129 1.44827 1.18603 1.09650 1.29013 1.23784 0.94933 0.95434 1.06206 1.23620 1.01840 0.94376 1.00753 1.75159 1.07804 1.11303 1.19220 1.78534 1.07388 1.13931 1.04792 1.21648 0.93679 0.96871 0.97706 0.94926 0.91676 0.90905 0.91672 0.84347 0.84518 0.85125 0.79178 0.79085 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.31 7.10 59.84 0.42 2.73 16 2 N -0.42 -10.89 3.00 -123.31 -0.37 -11.26 16 3 C -0.31 -8.54 9.24 -15.00 -0.14 -8.68 16 4 H 0.10 2.90 7.42 -52.48 -0.39 2.51 16 5 C 0.03 0.90 5.15 -17.45 -0.09 0.81 16 6 N -0.87 -23.05 10.75 55.50 0.60 -22.45 16 7 Si 0.93 20.45 29.57 -169.99 -5.03 15.42 16 8 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 C 0.47 11.61 7.31 -12.38 -0.09 11.52 16 12 O -0.58 -16.16 16.53 5.28 0.09 -16.08 16 13 C -0.07 -1.42 5.15 -104.99 -0.54 -1.96 16 14 C -0.07 -1.08 9.61 -39.14 -0.38 -1.46 16 15 C -0.11 -1.27 10.02 -39.67 -0.40 -1.67 16 16 C -0.12 -1.36 9.45 -39.32 -0.37 -1.73 16 17 C 0.10 1.56 6.67 -83.62 -0.56 1.01 16 18 N -0.23 -3.53 3.56 -10.50 -0.04 -3.57 16 19 C -0.06 -0.61 10.91 -16.67 -0.18 -0.79 16 20 C -0.05 -0.59 12.05 -17.73 -0.21 -0.80 16 21 N -0.27 -4.45 12.39 30.24 0.37 -4.07 16 22 N -0.07 -1.22 12.42 60.35 0.75 -0.47 16 23 C -0.08 -1.43 7.17 -38.98 -0.28 -1.71 16 24 H 0.03 0.65 5.76 -51.93 -0.30 0.35 16 25 H 0.06 1.53 7.47 -51.93 -0.39 1.14 16 26 H 0.07 1.75 6.20 -51.93 -0.32 1.43 16 27 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.14 2.09 8.00 -52.48 -0.42 1.67 16 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.13 1.02 6.77 -52.49 -0.36 0.66 16 31 H 0.19 1.20 7.12 -52.48 -0.37 0.83 16 32 H 0.19 1.42 8.06 -52.48 -0.42 0.99 16 33 H 0.16 3.22 5.17 -52.49 -0.27 2.95 16 LS Contribution 287.71 15.07 4.34 4.34 Total: -1.00 -32.92 287.71 -4.90 -37.82 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -2.80 Total: 3.05 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.81 Total: -2.73 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 1.31 Total: -41.82 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.09 Total: -16.08 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.92 -4.90 -37.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339399946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.160 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds