Wall clock time and date at job start Mon Mar 30 2020 01:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36875 * 119.99717 * 2 1 4 4 H 1.08006 * 119.99260 * 153.97442 * 3 2 1 5 5 C 1.39048 * 120.00338 * 333.97796 * 3 2 1 6 6 N 1.31359 * 119.99808 * 349.57713 * 5 3 2 7 7 Si 1.86793 * 119.99973 * 169.57493 * 5 3 2 8 8 H 1.48504 * 109.47160 * 60.00113 * 7 5 3 9 9 H 1.48493 * 109.47310 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47486 * 300.00116 * 7 5 3 11 11 C 1.34776 * 120.00001 * 180.02562 * 2 1 3 12 12 O 1.21595 * 119.99942 * 186.00383 * 11 2 1 13 13 C 1.47731 * 120.00184 * 6.00185 * 11 2 1 14 14 C 1.39694 * 120.12041 * 214.91954 * 13 11 2 15 15 C 1.37950 * 119.97781 * 180.02562 * 14 13 11 16 16 C 1.38277 * 120.22234 * 0.02562 * 15 14 13 17 17 C 1.38915 * 120.24445 * 359.95651 * 16 15 14 18 18 N 1.40272 * 119.99431 * 180.02562 * 17 16 15 19 19 C 1.36113 * 125.94362 * 4.71116 * 18 17 16 20 20 C 1.35370 * 106.05168 * 179.85076 * 19 18 17 21 21 N 1.33765 * 106.54000 * 0.40672 * 20 19 18 22 22 N 1.28610 * 109.06088 * 359.74229 * 21 20 19 23 23 C 1.38563 * 120.01794 * 0.29618 * 17 16 15 24 24 H 1.09001 * 109.47357 * 204.94014 * 1 2 3 25 25 H 1.09005 * 109.47368 * 324.93823 * 1 2 3 26 26 H 1.09001 * 109.47855 * 84.93606 * 1 2 3 27 27 H 0.97005 * 119.99686 * 179.97438 * 6 5 3 28 28 H 1.08003 * 120.00681 * 359.97438 * 14 13 11 29 29 H 1.07999 * 119.88635 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.88007 * 179.97438 * 16 15 14 31 31 H 1.08005 * 126.97098 * 0.02562 * 19 18 17 32 32 H 1.08003 * 126.72524 * 180.12006 * 20 19 18 33 33 H 1.08001 * 120.11244 * 179.73044 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1472 1.2327 0.4104 5 6 1.5598 2.3286 -0.5283 6 7 0.4397 2.2356 -1.2082 7 14 2.3606 3.9964 -0.2710 8 1 3.7222 3.9884 -0.8636 9 1 1.5412 5.0457 -0.9289 10 1 2.4554 4.2811 1.1834 11 6 2.1388 -1.1672 -0.0005 12 8 3.3498 -1.1701 0.1096 13 6 1.4063 -2.4430 -0.1349 14 6 1.8517 -3.5817 0.5408 15 6 1.1658 -4.7716 0.4129 16 6 0.0374 -4.8424 -0.3832 17 6 -0.4140 -3.7158 -1.0590 18 7 -1.5596 -3.7934 -1.8648 19 6 -2.3693 -4.8791 -1.9999 20 6 -3.3450 -4.5131 -2.8639 21 7 -3.0866 -3.2490 -3.2169 22 7 -2.0248 -2.8520 -2.6095 23 6 0.2704 -2.5166 -0.9418 24 1 -0.3634 -0.9318 0.4333 25 1 -0.3634 0.8412 0.5904 26 1 -0.3635 0.0907 -1.0236 27 1 0.0282 3.0332 -1.5764 28 1 2.7334 -3.5305 1.1625 29 1 1.5117 -5.6511 0.9356 30 1 -0.4952 -5.7770 -0.4798 31 1 -2.2576 -5.8372 -1.5140 32 1 -4.1679 -5.1238 -3.2052 33 1 -0.0767 -1.6408 -1.4700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339399946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:58 Heat of formation + Delta-G solvation = 96.102210 kcal Electronic energy + Delta-G solvation = -20191.722280 eV Core-core repulsion = 17027.072518 eV Total energy + Delta-G solvation = -3164.649761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.41004 -41.23593 -39.41674 -36.86425 -35.55994 -33.99246 -32.59622 -31.73614 -30.92972 -28.35767 -26.99428 -25.29369 -24.87124 -23.19939 -22.36622 -21.20348 -19.34908 -18.94219 -17.83677 -17.49258 -17.39247 -16.80117 -16.58149 -15.96350 -15.81595 -15.49733 -15.21444 -14.67375 -14.56475 -14.12207 -13.78967 -13.43329 -13.19615 -12.87774 -12.85819 -12.73406 -12.53888 -12.31017 -12.15797 -12.02342 -11.97121 -11.11130 -10.64604 -10.44651 -10.03956 -9.82059 -9.67593 -8.42098 -6.11672 -0.44967 -0.07416 0.97124 1.26956 1.37504 1.38174 1.49777 1.58931 1.94242 2.21467 2.65038 2.89987 3.02831 3.41349 3.58460 3.74439 3.94594 4.06358 4.13043 4.25632 4.30063 4.36085 4.39632 4.66627 4.78074 4.82216 5.09352 5.17371 5.22270 5.28476 5.33785 5.36215 5.50326 5.86580 5.99432 6.34836 7.02078 7.28631 7.44400 7.85077 8.59185 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.005676 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.320974 B = 4931.745073 C = 6138.632185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.445 5.445 3 C -0.352 4.352 4 H 0.080 0.920 5 C -0.002 4.002 6 N -0.893 5.893 7 Si 0.998 3.002 8 H -0.273 1.273 9 H -0.270 1.270 10 H -0.262 1.262 11 C 0.467 3.533 12 O -0.626 6.626 13 C -0.107 4.107 14 C -0.072 4.072 15 C -0.083 4.083 16 C -0.082 4.082 17 C 0.098 3.902 18 N -0.243 5.243 19 C -0.031 4.031 20 C -0.054 4.054 21 N -0.306 5.306 22 N -0.135 5.135 23 C -0.096 4.096 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.277 0.723 28 H 0.138 0.862 29 H 0.193 0.807 30 H 0.191 0.809 31 H 0.251 0.749 32 H 0.233 0.767 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 -18.753 2.942 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.161 5.161 3 C -0.479 4.479 4 H 0.097 0.903 5 C -0.205 4.205 6 N -0.530 5.530 7 Si 0.820 3.180 8 H -0.198 1.198 9 H -0.194 1.194 10 H -0.187 1.187 11 C 0.257 3.743 12 O -0.515 6.515 13 C -0.111 4.111 14 C -0.091 4.091 15 C -0.101 4.101 16 C -0.103 4.103 17 C 0.007 3.993 18 N -0.031 5.031 19 C -0.179 4.179 20 C -0.210 4.210 21 N -0.171 5.171 22 N -0.113 5.113 23 C -0.117 4.117 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.210 0.790 30 H 0.208 0.792 31 H 0.267 0.733 32 H 0.250 0.750 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.049 -17.078 2.356 18.625 hybrid contribution 0.245 0.598 0.077 0.651 sum -6.805 -16.480 2.433 17.995 Atomic orbital electron populations 1.21626 0.79758 0.99181 1.01209 1.43689 1.06508 1.04898 1.60969 1.19661 1.01569 0.86254 1.40438 0.90257 1.26309 0.96858 1.03502 0.93782 1.70041 1.19404 1.31505 1.32078 0.84936 0.78020 0.75922 0.79114 1.19799 1.19398 1.18711 1.18730 0.87095 0.84582 0.83879 1.90556 1.15364 1.87723 1.57863 1.19896 0.95700 0.95024 1.00477 1.21642 0.99401 0.91458 0.96632 1.21454 0.93257 0.97879 0.97486 1.21528 0.97167 0.96736 0.94824 1.17718 0.87607 0.96383 0.97584 1.44954 1.18883 1.10490 1.28763 1.24778 0.92698 0.95852 1.04553 1.24455 1.03129 0.93023 1.00441 1.75094 1.07932 1.14023 1.20010 1.78567 1.09100 1.16108 1.07508 1.21261 0.94300 0.97752 0.98351 0.92371 0.93230 0.92927 0.91361 0.84442 0.78961 0.79180 0.73329 0.75034 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.15 7.10 127.77 0.91 7.06 16 2 N -0.44 -24.58 3.00 -662.32 -1.99 -26.57 16 3 C -0.35 -20.78 9.24 84.10 0.78 -20.00 16 4 H 0.08 4.90 7.42 -2.91 -0.02 4.88 16 5 C 0.00 -0.09 5.15 84.96 0.44 0.35 16 6 N -0.89 -49.89 10.75 21.68 0.23 -49.66 16 7 Si 1.00 43.56 29.57 68.60 2.03 45.59 16 8 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 C 0.47 24.54 7.31 86.75 0.63 25.17 16 12 O -0.63 -36.90 16.53 -4.01 -0.07 -36.97 16 13 C -0.11 -4.26 5.15 -20.10 -0.10 -4.36 16 14 C -0.07 -2.09 9.61 22.55 0.22 -1.87 16 15 C -0.08 -1.43 10.02 22.21 0.22 -1.21 16 16 C -0.08 -1.37 9.45 22.44 0.21 -1.16 16 17 C 0.10 2.71 6.67 38.03 0.25 2.96 16 18 N -0.24 -6.78 3.56 -187.15 -0.67 -7.45 16 19 C -0.03 -0.52 10.91 83.37 0.91 0.39 16 20 C -0.05 -1.08 12.05 83.74 1.01 -0.07 16 21 N -0.31 -9.98 12.39 -58.25 -0.72 -10.70 16 22 N -0.14 -4.95 12.42 37.02 0.46 -4.49 16 23 C -0.10 -3.58 7.17 22.66 0.16 -3.42 16 24 H 0.06 2.48 5.76 -2.39 -0.01 2.46 16 25 H 0.05 2.50 7.47 -2.38 -0.02 2.48 16 26 H 0.05 2.77 6.20 -2.39 -0.01 2.75 16 27 H 0.28 14.48 8.31 -92.70 -0.77 13.71 16 28 H 0.14 4.00 8.00 -2.91 -0.02 3.97 16 29 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.19 1.02 6.77 -2.91 -0.02 1.00 16 31 H 0.25 0.90 7.12 -2.91 -0.02 0.88 16 32 H 0.23 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.12 5.40 5.17 -2.91 -0.02 5.38 16 Total: -1.00 -83.22 287.71 6.07 -77.14 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.16 Total: 9.28 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.64 Total: 3.82 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -2.68 Total: -98.87 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.07 Total: -36.97 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -83.22 6.07 -77.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339399946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.246 kcal (2) G-P(sol) polarization free energy of solvation -83.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds