Wall clock time and date at job start Mon Mar 30 2020 01:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36879 * 120.00149 * 2 1 4 4 H 1.08000 * 120.00208 * 130.58206 * 3 2 1 5 5 C 1.39034 * 119.99562 * 310.57870 * 3 2 1 6 6 N 1.31375 * 119.99998 * 170.18678 * 5 3 2 7 7 Si 1.86797 * 120.00431 * 350.18518 * 5 3 2 8 8 H 1.48503 * 109.47221 * 94.74342 * 7 5 3 9 9 H 1.48502 * 109.47436 * 214.74484 * 7 5 3 10 10 H 1.48505 * 109.47150 * 334.74667 * 7 5 3 11 11 C 1.34779 * 119.99375 * 179.97438 * 2 1 3 12 12 O 1.21607 * 120.00781 * 2.03943 * 11 2 1 13 13 C 1.47562 * 119.99301 * 182.03132 * 11 2 1 14 14 C 1.39773 * 120.08248 * 137.66975 * 13 11 2 15 15 C 1.37718 * 119.90791 * 180.02562 * 14 13 11 16 16 C 1.39037 * 120.09108 * 0.02562 * 15 14 13 17 17 N 1.39924 * 119.91384 * 179.97438 * 16 15 14 18 18 C 1.36350 * 127.11533 * 359.68529 * 17 16 15 19 19 N 1.30509 * 107.19563 * 180.25580 * 18 17 16 20 20 N 1.28535 * 109.91814 * 0.02562 * 19 18 17 21 21 C 1.30508 * 109.92105 * 359.97438 * 20 19 18 22 22 C 1.39049 * 120.17182 * 0.23177 * 16 15 14 23 23 C 1.37713 * 120.08423 * 359.48518 * 22 16 15 24 24 H 1.09005 * 109.46913 * 264.71077 * 1 2 3 25 25 H 1.08997 * 109.46961 * 24.70966 * 1 2 3 26 26 H 1.08996 * 109.47073 * 144.70700 * 1 2 3 27 27 H 0.96997 * 120.00135 * 179.97438 * 6 5 3 28 28 H 1.07996 * 120.04397 * 359.97438 * 14 13 11 29 29 H 1.08001 * 119.95058 * 179.97438 * 15 14 13 30 30 H 1.07994 * 126.40051 * 0.22869 * 18 17 16 31 31 H 1.08002 * 126.40107 * 179.97438 * 21 20 19 32 32 H 1.07998 * 119.95157 * 179.74693 * 22 16 15 33 33 H 1.08004 * 120.03839 * 180.23184 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 2.9464 1.3488 0.7103 5 6 1.8187 2.1790 -0.9145 6 7 2.3361 3.3806 -0.7948 7 14 0.6387 1.8055 -2.3136 8 1 -0.7379 2.1979 -1.9182 9 1 1.0439 2.5700 -3.5205 10 1 0.6718 0.3516 -2.6144 11 6 2.1388 -1.1673 0.0005 12 8 1.5314 -2.2201 -0.0365 13 6 3.6138 -1.1677 0.0458 14 6 4.2893 -2.0759 0.8658 15 6 5.6659 -2.0727 0.9057 16 6 6.3836 -1.1674 0.1322 17 7 7.7822 -1.1671 0.1760 18 6 8.5821 -1.9796 0.9237 19 7 9.8175 -1.6432 0.6711 20 7 9.8439 -0.6799 -0.1794 21 6 8.6268 -0.3500 -0.5156 22 6 5.7151 -0.2587 -0.6808 23 6 4.3389 -0.2595 -0.7306 24 1 -0.3633 -0.0947 1.0233 25 1 -0.3633 0.9336 -0.4296 26 1 -0.3633 -0.8388 -0.5937 27 1 2.1057 4.0737 -1.4330 28 1 3.7325 -2.7786 1.4679 29 1 6.1886 -2.7739 1.5394 30 1 8.2546 -2.7560 1.5991 31 1 8.3418 0.4256 -1.2110 32 1 6.2761 0.4456 -1.2770 33 1 3.8205 0.4441 -1.3652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340125441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:05 Heat of formation + Delta-G solvation = 92.230314 kcal Electronic energy + Delta-G solvation = -20075.556120 eV Core-core repulsion = 16910.738460 eV Total energy + Delta-G solvation = -3164.817659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.22687 -39.77161 -38.17798 -35.14916 -34.71765 -32.18096 -31.38073 -30.37570 -29.99626 -26.79066 -25.31002 -24.00221 -23.50569 -21.77202 -20.99719 -19.55484 -18.62983 -17.88738 -16.50032 -16.15839 -15.67174 -15.60815 -15.02110 -14.88013 -14.51393 -13.89963 -13.85533 -13.28311 -13.25440 -13.01725 -12.84001 -12.35136 -12.18619 -11.69915 -11.48338 -11.11336 -11.03391 -10.93380 -10.56482 -10.51789 -10.22543 -9.53924 -9.50375 -8.98294 -8.88979 -8.30604 -7.91935 -6.67781 -4.45060 0.71314 1.50061 2.06679 2.37161 2.79720 2.90230 3.05929 3.12642 3.38505 3.90150 3.99193 4.24123 4.37607 4.51597 4.67135 4.70286 4.87191 5.16129 5.20597 5.44117 5.53903 5.72558 5.81254 5.94995 5.98284 6.09692 6.13505 6.32934 6.40221 6.47484 6.72204 6.82143 7.08108 7.17152 7.82854 8.00834 8.58374 8.67653 9.01884 9.38187 10.39854 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.005292 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.706576 B = 5289.332249 C = 6095.202918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.460 5.460 3 C -0.352 4.352 4 H 0.104 0.896 5 C 0.069 3.931 6 N -0.857 5.857 7 Si 0.878 3.122 8 H -0.271 1.271 9 H -0.284 1.284 10 H -0.259 1.259 11 C 0.521 3.479 12 O -0.588 6.588 13 C -0.087 4.087 14 C -0.058 4.058 15 C -0.141 4.141 16 C 0.122 3.878 17 N -0.420 5.420 18 C 0.156 3.844 19 N -0.298 5.298 20 N -0.298 5.298 21 C 0.161 3.839 22 C -0.139 4.139 23 C -0.024 4.024 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.279 0.721 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.220 0.780 31 H 0.222 0.778 32 H 0.132 0.868 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 -5.585 0.375 6.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.180 5.180 3 C -0.479 4.479 4 H 0.122 0.878 5 C -0.140 4.140 6 N -0.491 5.491 7 Si 0.704 3.296 8 H -0.197 1.197 9 H -0.211 1.211 10 H -0.183 1.183 11 C 0.310 3.690 12 O -0.473 6.473 13 C -0.090 4.090 14 C -0.078 4.078 15 C -0.161 4.161 16 C 0.030 3.970 17 N -0.106 5.106 18 C -0.131 4.131 19 N -0.136 5.136 20 N -0.136 5.136 21 C -0.125 4.125 22 C -0.159 4.159 23 C -0.043 4.043 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.237 0.763 31 H 0.238 0.762 32 H 0.150 0.850 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.265 -5.846 0.341 7.875 hybrid contribution -2.115 0.289 -0.655 2.233 sum 3.150 -5.557 -0.314 6.396 Atomic orbital electron populations 1.21818 0.82656 1.01129 1.01202 1.43504 1.04425 1.05596 1.64511 1.19072 1.19517 0.90581 1.18728 0.87821 1.25506 0.96558 0.94868 0.97032 1.69650 1.42049 1.01653 1.35774 0.86843 0.81028 0.79891 0.81808 1.19730 1.21069 1.18251 1.18302 0.86691 0.83976 0.80048 1.90672 1.69764 1.31659 1.55246 1.20070 0.94450 0.96370 0.98130 1.21011 0.92629 0.97091 0.97026 1.20577 0.94211 0.99979 1.01327 1.17862 0.78568 0.99679 1.00929 1.44256 1.06519 1.27200 1.32609 1.26708 0.87009 0.99418 0.99936 1.74189 1.17260 1.09825 1.12325 1.74201 1.18444 1.09877 1.11089 1.26792 0.86010 0.99032 1.00705 1.20816 0.95122 0.99240 1.00685 1.21677 0.91881 0.94490 0.96257 0.93104 0.92006 0.92015 0.91085 0.84600 0.85241 0.76346 0.76154 0.85022 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 8.82 59.85 0.53 2.03 16 2 N -0.46 -10.19 2.41 -123.37 -0.30 -10.49 16 3 C -0.35 -8.18 6.61 -15.00 -0.10 -8.28 16 4 H 0.10 2.59 7.49 -52.49 -0.39 2.20 16 5 C 0.07 1.63 5.16 -17.45 -0.09 1.54 16 6 N -0.86 -21.39 13.95 55.50 0.77 -20.61 16 7 Si 0.88 18.53 24.88 -169.99 -4.23 14.30 16 8 H -0.27 -5.58 6.89 56.52 0.39 -5.19 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.26 -5.57 7.03 56.52 0.40 -5.17 16 11 C 0.52 11.27 7.27 -12.46 -0.09 11.18 16 12 O -0.59 -13.82 16.61 5.27 0.09 -13.74 16 13 C -0.09 -1.60 5.28 -104.95 -0.55 -2.15 16 14 C -0.06 -0.89 9.65 -39.20 -0.38 -1.26 16 15 C -0.14 -1.81 9.46 -39.48 -0.37 -2.19 16 16 C 0.12 1.65 6.65 -83.57 -0.56 1.10 16 17 N -0.42 -5.43 2.99 -63.16 -0.19 -5.62 16 18 C 0.16 1.92 12.06 -89.16 -1.08 0.84 16 19 N -0.30 -4.53 12.19 29.85 0.36 -4.17 16 20 N -0.30 -4.61 12.19 29.85 0.36 -4.25 16 21 C 0.16 2.08 12.06 -89.16 -1.08 1.00 16 22 C -0.14 -2.00 9.46 -39.47 -0.37 -2.37 16 23 C -0.02 -0.42 8.09 -39.20 -0.32 -0.73 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.23 4.28 -51.93 -0.22 1.01 16 26 H 0.06 1.21 7.56 -51.93 -0.39 0.82 16 27 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.13 1.23 6.84 -52.49 -0.36 0.87 16 30 H 0.22 1.76 7.17 -52.49 -0.38 1.39 16 31 H 0.22 2.05 7.17 -52.49 -0.38 1.68 16 32 H 0.13 1.57 6.84 -52.49 -0.36 1.21 16 33 H 0.16 3.01 6.27 -52.48 -0.33 2.68 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -29.36 284.98 -6.09 -35.45 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -2.80 Total: 4.13 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -4.46 Total: 0.71 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 1.02 Total: -45.14 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.23 Total: 14.30 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.36 -6.09 -35.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340125441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.675 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds