Wall clock time and date at job start Mon Mar 30 2020 01:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36879 * 120.00149 * 2 1 4 4 H 1.08000 * 120.00208 * 130.58206 * 3 2 1 5 5 C 1.39034 * 119.99562 * 310.57870 * 3 2 1 6 6 N 1.31375 * 119.99998 * 170.18678 * 5 3 2 7 7 Si 1.86797 * 120.00431 * 350.18518 * 5 3 2 8 8 H 1.48503 * 109.47221 * 94.74342 * 7 5 3 9 9 H 1.48502 * 109.47436 * 214.74484 * 7 5 3 10 10 H 1.48505 * 109.47150 * 334.74667 * 7 5 3 11 11 C 1.34779 * 119.99375 * 179.97438 * 2 1 3 12 12 O 1.21607 * 120.00781 * 2.03943 * 11 2 1 13 13 C 1.47562 * 119.99301 * 182.03132 * 11 2 1 14 14 C 1.39773 * 120.08248 * 137.66975 * 13 11 2 15 15 C 1.37718 * 119.90791 * 180.02562 * 14 13 11 16 16 C 1.39037 * 120.09108 * 0.02562 * 15 14 13 17 17 N 1.39924 * 119.91384 * 179.97438 * 16 15 14 18 18 C 1.36350 * 127.11533 * 359.68529 * 17 16 15 19 19 N 1.30509 * 107.19563 * 180.25580 * 18 17 16 20 20 N 1.28535 * 109.91814 * 0.02562 * 19 18 17 21 21 C 1.30508 * 109.92105 * 359.97438 * 20 19 18 22 22 C 1.39049 * 120.17182 * 0.23177 * 16 15 14 23 23 C 1.37713 * 120.08423 * 359.48518 * 22 16 15 24 24 H 1.09005 * 109.46913 * 264.71077 * 1 2 3 25 25 H 1.08997 * 109.46961 * 24.70966 * 1 2 3 26 26 H 1.08996 * 109.47073 * 144.70700 * 1 2 3 27 27 H 0.96997 * 120.00135 * 179.97438 * 6 5 3 28 28 H 1.07996 * 120.04397 * 359.97438 * 14 13 11 29 29 H 1.08001 * 119.95058 * 179.97438 * 15 14 13 30 30 H 1.07994 * 126.40051 * 0.22869 * 18 17 16 31 31 H 1.08002 * 126.40107 * 179.97438 * 21 20 19 32 32 H 1.07998 * 119.95157 * 179.74693 * 22 16 15 33 33 H 1.08004 * 120.03839 * 180.23184 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 2.9464 1.3488 0.7103 5 6 1.8187 2.1790 -0.9145 6 7 2.3361 3.3806 -0.7948 7 14 0.6387 1.8055 -2.3136 8 1 -0.7379 2.1979 -1.9182 9 1 1.0439 2.5700 -3.5205 10 1 0.6718 0.3516 -2.6144 11 6 2.1388 -1.1673 0.0005 12 8 1.5314 -2.2201 -0.0365 13 6 3.6138 -1.1677 0.0458 14 6 4.2893 -2.0759 0.8658 15 6 5.6659 -2.0727 0.9057 16 6 6.3836 -1.1674 0.1322 17 7 7.7822 -1.1671 0.1760 18 6 8.5821 -1.9796 0.9237 19 7 9.8175 -1.6432 0.6711 20 7 9.8439 -0.6799 -0.1794 21 6 8.6268 -0.3500 -0.5156 22 6 5.7151 -0.2587 -0.6808 23 6 4.3389 -0.2595 -0.7306 24 1 -0.3633 -0.0947 1.0233 25 1 -0.3633 0.9336 -0.4296 26 1 -0.3633 -0.8388 -0.5937 27 1 2.1057 4.0737 -1.4330 28 1 3.7325 -2.7786 1.4679 29 1 6.1886 -2.7739 1.5394 30 1 8.2546 -2.7560 1.5991 31 1 8.3418 0.4256 -1.2110 32 1 6.2761 0.4456 -1.2770 33 1 3.8205 0.4441 -1.3652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340125441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:05 Heat of formation + Delta-G solvation = 76.728182 kcal Electronic energy + Delta-G solvation = -20076.228343 eV Core-core repulsion = 16910.738460 eV Total energy + Delta-G solvation = -3165.489882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.25393 -41.22243 -39.56717 -36.89553 -35.86757 -33.99039 -32.49403 -31.46500 -31.23648 -28.34427 -26.99778 -25.23377 -24.63394 -22.93952 -22.09500 -21.14234 -19.76625 -19.42422 -18.17313 -17.20547 -17.14290 -16.75307 -16.44626 -16.29859 -15.86301 -15.14114 -15.12210 -14.76685 -14.60247 -14.42834 -14.23869 -13.89152 -13.64333 -13.34738 -12.81869 -12.61839 -12.37240 -12.15268 -12.07156 -11.93829 -11.57477 -11.23405 -10.69634 -10.57361 -10.07121 -9.68066 -9.50317 -8.50077 -6.28992 -0.43989 0.34131 0.97248 1.21944 1.34290 1.34813 1.43009 1.77414 1.87525 2.16776 2.54350 2.74346 2.97286 3.42959 3.58823 3.67240 3.85941 3.97535 4.13229 4.21935 4.31729 4.36049 4.54505 4.61291 4.68780 4.76896 4.96043 4.98941 5.16577 5.31236 5.41620 5.51538 5.61465 6.01039 6.05592 6.16278 6.89011 7.26341 7.56597 7.64887 8.60864 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.005292 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.706576 B = 5289.332249 C = 6095.202918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.474 5.474 3 C -0.337 4.337 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.893 5.893 7 Si 0.923 3.077 8 H -0.259 1.259 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.518 3.482 12 O -0.612 6.612 13 C -0.121 4.121 14 C -0.056 4.056 15 C -0.125 4.125 16 C 0.136 3.864 17 N -0.426 5.426 18 C 0.170 3.830 19 N -0.334 5.334 20 N -0.333 5.333 21 C 0.166 3.834 22 C -0.136 4.136 23 C -0.038 4.038 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.282 0.718 28 H 0.145 0.855 29 H 0.173 0.827 30 H 0.262 0.738 31 H 0.250 0.750 32 H 0.154 0.846 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 -6.663 0.724 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.194 5.194 3 C -0.465 4.465 4 H 0.098 0.902 5 C -0.166 4.166 6 N -0.529 5.529 7 Si 0.749 3.251 8 H -0.185 1.185 9 H -0.209 1.209 10 H -0.192 1.192 11 C 0.308 3.692 12 O -0.498 6.498 13 C -0.124 4.124 14 C -0.076 4.076 15 C -0.145 4.145 16 C 0.043 3.957 17 N -0.112 5.112 18 C -0.116 4.116 19 N -0.171 5.171 20 N -0.169 5.169 21 C -0.122 4.122 22 C -0.156 4.156 23 C -0.057 4.057 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.163 0.837 29 H 0.191 0.809 30 H 0.277 0.723 31 H 0.266 0.734 32 H 0.172 0.828 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.925 -6.922 0.696 9.138 hybrid contribution -2.201 0.538 -0.707 2.373 sum 3.724 -6.384 -0.011 7.391 Atomic orbital electron populations 1.21907 0.81758 1.01255 1.02301 1.43651 1.05233 1.05455 1.65091 1.18768 1.18991 0.90830 1.17923 0.90181 1.25896 0.97708 0.94584 0.98367 1.69708 1.43802 1.02476 1.36917 0.86130 0.80212 0.78961 0.79819 1.18459 1.20887 1.19211 1.18838 0.88254 0.83332 0.78739 1.90635 1.70819 1.32214 1.56166 1.20002 0.92720 0.98858 1.00840 1.21145 0.93777 0.96264 0.96378 1.20939 0.93137 0.99754 1.00630 1.17866 0.78914 0.98989 0.99971 1.44311 1.06096 1.27681 1.33121 1.27523 0.86054 0.99027 0.99042 1.74135 1.18974 1.10654 1.13342 1.74151 1.19856 1.10790 1.12122 1.27392 0.85399 0.99012 1.00346 1.20944 0.94018 0.99735 1.00865 1.21413 0.93131 0.94493 0.96670 0.91589 0.91912 0.91755 0.90819 0.83677 0.80950 0.72278 0.73414 0.82838 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.79 8.82 127.77 1.13 3.92 16 2 N -0.47 -21.12 2.41 -662.50 -1.59 -22.71 16 3 C -0.34 -15.94 6.61 84.10 0.56 -15.38 16 4 H 0.08 4.12 7.49 -2.91 -0.02 4.10 16 5 C 0.04 1.91 5.16 84.95 0.44 2.34 16 6 N -0.89 -45.07 13.95 21.68 0.30 -44.77 16 7 Si 0.92 38.12 24.88 68.60 1.71 39.82 16 8 H -0.26 -10.13 6.89 99.48 0.69 -9.45 16 9 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.27 -11.35 7.03 99.48 0.70 -10.65 16 11 C 0.52 22.51 7.27 86.70 0.63 23.14 16 12 O -0.61 -28.72 16.61 -4.05 -0.07 -28.78 16 13 C -0.12 -4.40 5.28 -20.08 -0.11 -4.51 16 14 C -0.06 -1.60 9.65 22.52 0.22 -1.38 16 15 C -0.13 -2.73 9.46 22.34 0.21 -2.52 16 16 C 0.14 3.22 6.65 38.24 0.25 3.48 16 17 N -0.43 -9.54 2.99 -353.73 -1.06 -10.60 16 18 C 0.17 3.55 12.06 179.84 2.17 5.72 16 19 N -0.33 -9.43 12.19 -59.47 -0.73 -10.15 16 20 N -0.33 -9.69 12.19 -59.46 -0.73 -10.42 16 21 C 0.17 3.84 12.06 179.84 2.17 6.01 16 22 C -0.14 -3.66 9.46 22.34 0.21 -3.45 16 23 C -0.04 -1.30 8.09 22.51 0.18 -1.12 16 24 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.06 2.45 4.28 -2.39 -0.01 2.44 16 26 H 0.06 2.49 7.56 -2.39 -0.02 2.48 16 27 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 28 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.17 2.25 6.84 -2.91 -0.02 2.23 16 30 H 0.26 2.77 7.17 -2.91 -0.02 2.75 16 31 H 0.25 3.91 7.17 -2.91 -0.02 3.89 16 32 H 0.15 3.33 6.84 -2.91 -0.02 3.31 16 33 H 0.13 5.24 6.27 -2.91 -0.02 5.22 16 Total: -1.00 -64.15 284.98 7.03 -57.12 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.13 Total: 14.25 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 8.06 Total: 16.24 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -3.80 Total: -98.65 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.07 Total: -28.78 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.71 Total: 39.82 kcal Total: -64.15 7.03 -57.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340125441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.845 kcal (2) G-P(sol) polarization free energy of solvation -64.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds