Wall clock time and date at job start Mon Mar 30 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36880 * 119.99819 * 2 1 4 4 H 1.07999 * 119.99640 * 162.12602 * 3 2 1 5 5 C 1.39042 * 120.00128 * 342.12744 * 3 2 1 6 6 N 1.31370 * 119.99843 * 342.93257 * 5 3 2 7 7 Si 1.86803 * 119.99786 * 162.93158 * 5 3 2 8 8 H 1.48495 * 109.47065 * 89.99856 * 7 5 3 9 9 H 1.48502 * 109.46962 * 210.00095 * 7 5 3 10 10 H 1.48497 * 109.47113 * 329.99997 * 7 5 3 11 11 C 1.34770 * 119.99873 * 180.02562 * 2 1 3 12 12 O 1.21613 * 120.00194 * 184.40311 * 11 2 1 13 13 C 1.47572 * 120.00179 * 4.40952 * 11 2 1 14 14 C 1.39764 * 120.08580 * 212.15309 * 13 11 2 15 15 C 1.37712 * 119.91487 * 179.97438 * 14 13 11 16 16 C 1.39042 * 120.08735 * 359.97438 * 15 14 13 17 17 N 1.39936 * 119.91444 * 179.97438 * 16 15 14 18 18 C 1.36315 * 126.86355 * 180.02562 * 17 16 15 19 19 C 1.34960 * 106.77684 * 179.97438 * 18 17 16 20 20 N 1.33373 * 109.01786 * 359.97438 * 19 18 17 21 21 N 1.28769 * 109.92586 * 0.02562 * 20 19 18 22 22 C 1.39043 * 120.17260 * 0.25417 * 16 15 14 23 23 C 1.37726 * 120.08310 * 359.49417 * 22 16 15 24 24 H 1.09003 * 109.47095 * 209.86909 * 1 2 3 25 25 H 1.09002 * 109.47032 * 329.87067 * 1 2 3 26 26 H 1.08997 * 109.47471 * 89.87142 * 1 2 3 27 27 H 0.97001 * 119.99489 * 180.02562 * 6 5 3 28 28 H 1.08008 * 120.04127 * 359.95067 * 14 13 11 29 29 H 1.08008 * 119.95770 * 180.02562 * 15 14 13 30 30 H 1.07998 * 126.61148 * 359.70156 * 18 17 16 31 31 H 1.08002 * 125.49388 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.96013 * 179.72357 * 22 16 15 33 33 H 1.07998 * 120.04417 * 180.23414 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1903 1.2080 0.2871 5 6 1.5045 2.3605 -0.3695 6 7 0.3694 2.3074 -1.0288 7 14 2.2521 4.0146 0.0715 8 1 3.1532 4.4580 -1.0224 9 1 1.1691 5.0138 0.2564 10 1 3.0282 3.8870 1.3311 11 6 2.1388 -1.1672 -0.0005 12 8 3.3523 -1.1688 0.0803 13 6 1.4043 -2.4432 -0.0993 14 6 1.8980 -3.5868 0.5345 15 6 1.2094 -4.7757 0.4404 16 6 0.0241 -4.8392 -0.2836 17 7 -0.6725 -6.0493 -0.3773 18 6 -1.8396 -6.2714 -1.0456 19 6 -2.1472 -7.5737 -0.8701 20 7 -1.2050 -8.1455 -0.1190 21 7 -0.3086 -7.2767 0.1971 22 6 -0.4680 -3.7049 -0.9196 23 6 0.2122 -2.5110 -0.8258 24 1 -0.3633 -0.8912 0.5118 25 1 -0.3633 0.8888 0.5159 26 1 -0.3634 0.0023 -1.0276 27 1 -0.0803 3.1273 -1.2869 28 1 2.8187 -3.5382 1.0972 29 1 1.5901 -5.6597 0.9304 30 1 -2.4106 -5.5443 -1.6038 31 1 -3.0158 -8.0728 -1.2737 32 1 -1.3867 -3.7592 -1.4847 33 1 -0.1725 -1.6295 -1.3169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341116874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:00 Heat of formation + Delta-G solvation = 118.187851 kcal Electronic energy + Delta-G solvation = -19734.336419 eV Core-core repulsion = 16570.644363 eV Total energy + Delta-G solvation = -3163.692056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26071 -39.71521 -37.86964 -34.96081 -34.32760 -32.08171 -31.25316 -30.57318 -29.61790 -26.57520 -25.41018 -23.97597 -23.31201 -21.70268 -21.12664 -19.64509 -18.55012 -17.18403 -16.59667 -15.91360 -15.32192 -15.29275 -15.10256 -14.67973 -14.23506 -14.02772 -13.83455 -13.39897 -13.18844 -12.89059 -12.33701 -12.03052 -11.87033 -11.58350 -11.45243 -11.30102 -11.06664 -10.98335 -10.67562 -10.46939 -10.41893 -9.52859 -9.19963 -8.97272 -8.68149 -8.25139 -7.93974 -6.58261 -4.01162 0.41385 1.40360 1.73755 2.05978 2.40361 3.04676 3.14504 3.20536 3.47582 3.96259 4.16386 4.33476 4.37141 4.63058 4.77066 4.88427 4.93566 4.98187 5.17103 5.41697 5.44353 5.54401 5.63925 5.93601 6.01065 6.11104 6.27759 6.33974 6.54918 6.61012 6.64882 6.93509 7.00122 7.35818 7.90005 8.00582 8.26673 8.97059 9.18198 9.77046 10.45277 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045934 B = 0.003881 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.423159 B = 7212.679259 C = 7725.127217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.425 5.425 3 C -0.304 4.304 4 H 0.107 0.893 5 C 0.032 3.968 6 N -0.869 5.869 7 Si 0.929 3.071 8 H -0.275 1.275 9 H -0.281 1.281 10 H -0.267 1.267 11 C 0.465 3.535 12 O -0.588 6.588 13 C -0.083 4.083 14 C -0.061 4.061 15 C -0.112 4.112 16 C 0.122 3.878 17 N -0.305 5.305 18 C 0.020 3.980 19 C -0.078 4.078 20 N -0.240 5.240 21 N -0.068 5.068 22 C -0.129 4.129 23 C -0.085 4.085 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.272 0.728 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.195 0.805 31 H 0.188 0.812 32 H 0.132 0.868 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 -9.770 -0.962 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.141 5.141 3 C -0.432 4.432 4 H 0.124 0.876 5 C -0.173 4.173 6 N -0.507 5.507 7 Si 0.755 3.245 8 H -0.201 1.201 9 H -0.206 1.206 10 H -0.192 1.192 11 C 0.254 3.746 12 O -0.474 6.474 13 C -0.087 4.087 14 C -0.081 4.081 15 C -0.132 4.132 16 C 0.030 3.970 17 N -0.086 5.086 18 C -0.131 4.131 19 C -0.234 4.234 20 N -0.109 5.109 21 N -0.046 5.046 22 C -0.150 4.150 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.212 0.788 31 H 0.205 0.795 32 H 0.149 0.851 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.092 -10.358 -0.128 12.554 hybrid contribution -0.765 1.482 -0.661 1.794 sum -7.857 -8.876 -0.790 11.880 Atomic orbital electron populations 1.21924 0.81053 1.00057 1.01170 1.43574 1.05721 1.04907 1.59856 1.19801 0.97621 0.82856 1.42928 0.87572 1.25381 0.96402 1.00285 0.95210 1.70003 1.17317 1.29470 1.33921 0.85883 0.78664 0.80456 0.79524 1.20053 1.20590 1.19151 1.17777 0.87256 0.82961 0.86566 1.90632 1.13284 1.86588 1.56912 1.20540 0.94729 0.95865 0.97593 1.21166 0.99323 0.90343 0.97222 1.20791 0.93474 0.99218 0.99699 1.17670 0.94454 0.81951 1.02944 1.48022 1.16656 1.09270 1.34650 1.23575 0.89791 0.99589 1.00114 1.23207 1.02665 0.92112 1.05451 1.74325 1.01168 1.24744 1.10683 1.82113 1.18944 0.84806 1.18708 1.20747 1.01520 0.91128 1.01642 1.21817 0.93656 0.97677 0.97304 0.94491 0.90583 0.92072 0.91764 0.84084 0.84359 0.78812 0.79507 0.85056 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.07 7.07 59.85 0.42 2.50 16 2 N -0.42 -10.34 3.02 -123.37 -0.37 -10.71 16 3 C -0.30 -8.06 9.36 -15.00 -0.14 -8.20 16 4 H 0.11 2.96 7.33 -52.49 -0.38 2.58 16 5 C 0.03 0.79 5.00 -17.45 -0.09 0.71 16 6 N -0.87 -21.35 10.67 55.50 0.59 -20.76 16 7 Si 0.93 19.47 29.59 -169.99 -5.03 14.44 16 8 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 9 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 C 0.46 11.07 7.35 -12.46 -0.09 10.98 16 12 O -0.59 -16.05 16.40 5.27 0.09 -15.96 16 13 C -0.08 -1.55 5.28 -104.95 -0.55 -2.11 16 14 C -0.06 -1.01 9.59 -39.20 -0.38 -1.39 16 15 C -0.11 -1.65 9.66 -39.48 -0.38 -2.03 16 16 C 0.12 1.70 6.70 -83.56 -0.56 1.14 16 17 N -0.30 -4.07 3.85 -10.49 -0.04 -4.11 16 18 C 0.02 0.20 10.92 -16.72 -0.18 0.02 16 19 C -0.08 -0.80 11.86 -18.05 -0.21 -1.02 16 20 N -0.24 -3.37 12.33 30.09 0.37 -2.99 16 21 N -0.07 -1.03 13.15 60.35 0.79 -0.23 16 22 C -0.13 -1.66 9.46 -39.47 -0.37 -2.03 16 23 C -0.09 -1.33 7.61 -39.20 -0.30 -1.63 16 24 H 0.04 0.64 5.89 -51.93 -0.31 0.34 16 25 H 0.08 1.66 6.75 -51.93 -0.35 1.31 16 26 H 0.06 1.23 6.33 -51.93 -0.33 0.91 16 27 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 28 H 0.14 2.32 7.95 -52.48 -0.42 1.90 16 29 H 0.14 1.89 7.72 -52.48 -0.41 1.48 16 30 H 0.20 1.10 7.16 -52.49 -0.38 0.73 16 31 H 0.19 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.21 6.82 -52.49 -0.36 0.86 16 33 H 0.15 2.38 5.00 -52.49 -0.26 2.12 16 LS Contribution 287.50 15.07 4.33 4.33 Total: -1.00 -31.21 287.50 -4.85 -36.06 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -2.75 Total: 3.00 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.84 Total: -3.05 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 1.34 Total: -38.82 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.09 Total: -15.96 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.21 -4.85 -36.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341116874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.249 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds