Wall clock time and date at job start Mon Mar 30 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36880 * 119.99819 * 2 1 4 4 H 1.07999 * 119.99640 * 162.12602 * 3 2 1 5 5 C 1.39042 * 120.00128 * 342.12744 * 3 2 1 6 6 N 1.31370 * 119.99843 * 342.93257 * 5 3 2 7 7 Si 1.86803 * 119.99786 * 162.93158 * 5 3 2 8 8 H 1.48495 * 109.47065 * 89.99856 * 7 5 3 9 9 H 1.48502 * 109.46962 * 210.00095 * 7 5 3 10 10 H 1.48497 * 109.47113 * 329.99997 * 7 5 3 11 11 C 1.34770 * 119.99873 * 180.02562 * 2 1 3 12 12 O 1.21613 * 120.00194 * 184.40311 * 11 2 1 13 13 C 1.47572 * 120.00179 * 4.40952 * 11 2 1 14 14 C 1.39764 * 120.08580 * 212.15309 * 13 11 2 15 15 C 1.37712 * 119.91487 * 179.97438 * 14 13 11 16 16 C 1.39042 * 120.08735 * 359.97438 * 15 14 13 17 17 N 1.39936 * 119.91444 * 179.97438 * 16 15 14 18 18 C 1.36315 * 126.86355 * 180.02562 * 17 16 15 19 19 C 1.34960 * 106.77684 * 179.97438 * 18 17 16 20 20 N 1.33373 * 109.01786 * 359.97438 * 19 18 17 21 21 N 1.28769 * 109.92586 * 0.02562 * 20 19 18 22 22 C 1.39043 * 120.17260 * 0.25417 * 16 15 14 23 23 C 1.37726 * 120.08310 * 359.49417 * 22 16 15 24 24 H 1.09003 * 109.47095 * 209.86909 * 1 2 3 25 25 H 1.09002 * 109.47032 * 329.87067 * 1 2 3 26 26 H 1.08997 * 109.47471 * 89.87142 * 1 2 3 27 27 H 0.97001 * 119.99489 * 180.02562 * 6 5 3 28 28 H 1.08008 * 120.04127 * 359.95067 * 14 13 11 29 29 H 1.08008 * 119.95770 * 180.02562 * 15 14 13 30 30 H 1.07998 * 126.61148 * 359.70156 * 18 17 16 31 31 H 1.08002 * 125.49388 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.96013 * 179.72357 * 22 16 15 33 33 H 1.07998 * 120.04417 * 180.23414 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1903 1.2080 0.2871 5 6 1.5045 2.3605 -0.3695 6 7 0.3694 2.3074 -1.0288 7 14 2.2521 4.0146 0.0715 8 1 3.1532 4.4580 -1.0224 9 1 1.1691 5.0138 0.2564 10 1 3.0282 3.8870 1.3311 11 6 2.1388 -1.1672 -0.0005 12 8 3.3523 -1.1688 0.0803 13 6 1.4043 -2.4432 -0.0993 14 6 1.8980 -3.5868 0.5345 15 6 1.2094 -4.7757 0.4404 16 6 0.0241 -4.8392 -0.2836 17 7 -0.6725 -6.0493 -0.3773 18 6 -1.8396 -6.2714 -1.0456 19 6 -2.1472 -7.5737 -0.8701 20 7 -1.2050 -8.1455 -0.1190 21 7 -0.3086 -7.2767 0.1971 22 6 -0.4680 -3.7049 -0.9196 23 6 0.2122 -2.5110 -0.8258 24 1 -0.3633 -0.8912 0.5118 25 1 -0.3633 0.8888 0.5159 26 1 -0.3634 0.0023 -1.0276 27 1 -0.0803 3.1273 -1.2869 28 1 2.8187 -3.5382 1.0972 29 1 1.5901 -5.6597 0.9304 30 1 -2.4106 -5.5443 -1.6038 31 1 -3.0158 -8.0728 -1.2737 32 1 -1.3867 -3.7592 -1.4847 33 1 -0.1725 -1.6295 -1.3169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341116874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:59 Heat of formation + Delta-G solvation = 97.635993 kcal Electronic energy + Delta-G solvation = -19735.227615 eV Core-core repulsion = 16570.644363 eV Total energy + Delta-G solvation = -3164.583252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.18532 -41.18500 -39.38573 -36.83001 -35.48763 -33.81933 -32.44416 -31.60213 -30.84432 -28.28395 -26.99675 -25.33801 -24.40434 -22.89297 -22.14025 -21.17952 -19.57693 -19.03135 -18.21916 -17.00097 -16.86721 -16.58680 -16.20661 -15.93945 -15.83459 -15.34326 -15.08663 -14.80067 -14.52083 -14.11322 -13.82870 -13.72532 -13.20157 -13.09850 -12.90300 -12.63103 -12.49073 -12.24916 -12.15835 -12.02667 -11.92373 -11.03164 -10.55857 -10.39266 -10.15993 -9.81017 -9.48093 -8.44808 -5.99230 -0.68807 0.21726 0.64048 1.10516 1.37726 1.42349 1.54194 1.58621 1.97896 2.24323 2.66724 2.94598 3.09418 3.35508 3.58874 3.75271 3.86494 3.95348 4.15318 4.18973 4.29832 4.42456 4.51830 4.60531 4.85772 4.97343 4.99156 5.10912 5.23870 5.31521 5.37485 5.40582 5.44824 5.85989 6.01341 6.40108 7.07677 7.09424 7.34377 7.92528 8.57660 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045934 B = 0.003881 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.423159 B = 7212.679259 C = 7725.127217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.440 5.440 3 C -0.352 4.352 4 H 0.074 0.926 5 C 0.007 3.993 6 N -0.879 5.879 7 Si 0.988 3.012 8 H -0.274 1.274 9 H -0.263 1.263 10 H -0.274 1.274 11 C 0.457 3.543 12 O -0.638 6.638 13 C -0.113 4.113 14 C -0.063 4.063 15 C -0.113 4.113 16 C 0.138 3.862 17 N -0.320 5.320 18 C 0.038 3.962 19 C -0.078 4.078 20 N -0.264 5.264 21 N -0.114 5.114 22 C -0.108 4.108 23 C -0.078 4.078 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.279 0.721 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.245 0.755 31 H 0.227 0.773 32 H 0.183 0.817 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 -10.648 -2.235 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.155 5.155 3 C -0.480 4.480 4 H 0.092 0.908 5 C -0.197 4.197 6 N -0.516 5.516 7 Si 0.811 3.189 8 H -0.200 1.200 9 H -0.187 1.187 10 H -0.198 1.198 11 C 0.249 3.751 12 O -0.528 6.528 13 C -0.117 4.117 14 C -0.083 4.083 15 C -0.133 4.133 16 C 0.045 3.955 17 N -0.101 5.101 18 C -0.112 4.112 19 C -0.234 4.234 20 N -0.132 5.132 21 N -0.090 5.090 22 C -0.128 4.128 23 C -0.097 4.097 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.163 0.837 30 H 0.261 0.739 31 H 0.243 0.757 32 H 0.200 0.800 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.456 -11.266 -1.400 15.434 hybrid contribution 0.126 1.504 -0.330 1.545 sum -10.329 -9.762 -1.730 14.318 Atomic orbital electron populations 1.21917 0.78890 1.00658 1.01527 1.43758 1.07138 1.04502 1.60147 1.19677 0.97219 0.84887 1.46211 0.90776 1.26025 0.96809 1.02485 0.94350 1.70027 1.17596 1.30573 1.33410 0.85023 0.78268 0.76860 0.78738 1.19985 1.18695 1.19843 1.18606 0.87081 0.84563 0.84896 1.90569 1.15765 1.87760 1.58733 1.20183 0.96696 0.93697 1.01116 1.21056 0.99251 0.90623 0.97338 1.20803 0.94038 0.98435 1.00065 1.17785 0.93668 0.82775 1.01260 1.48097 1.17847 1.08572 1.35634 1.24514 0.88071 1.00450 0.98186 1.23986 1.02787 0.92527 1.04128 1.74313 1.02075 1.25311 1.11537 1.82147 1.20312 0.85727 1.20865 1.21080 1.02334 0.88980 1.00450 1.21794 0.92381 0.99095 0.96414 0.91448 0.92284 0.91675 0.91046 0.85209 0.83745 0.73933 0.75673 0.79996 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.58 7.07 127.77 0.90 5.48 16 2 N -0.44 -22.20 3.02 -662.50 -2.00 -24.20 16 3 C -0.35 -19.57 9.36 84.10 0.79 -18.78 16 4 H 0.07 4.47 7.33 -2.91 -0.02 4.44 16 5 C 0.01 0.37 5.00 84.95 0.42 0.79 16 6 N -0.88 -43.01 10.67 21.68 0.23 -42.78 16 7 Si 0.99 40.37 29.59 68.60 2.03 42.40 16 8 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 9 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 C 0.46 22.82 7.35 86.71 0.64 23.46 16 12 O -0.64 -37.26 16.40 -4.07 -0.07 -37.33 16 13 C -0.11 -4.26 5.28 -20.08 -0.11 -4.36 16 14 C -0.06 -2.13 9.59 22.51 0.22 -1.91 16 15 C -0.11 -3.22 9.66 22.34 0.22 -3.01 16 16 C 0.14 3.40 6.70 38.23 0.26 3.66 16 17 N -0.32 -7.36 3.85 -187.11 -0.72 -8.08 16 18 C 0.04 0.54 10.92 83.24 0.91 1.45 16 19 C -0.08 -1.24 11.86 83.70 0.99 -0.25 16 20 N -0.26 -6.75 12.33 -58.72 -0.72 -7.47 16 21 N -0.11 -3.23 13.15 37.02 0.49 -2.74 16 22 C -0.11 -2.28 9.46 22.34 0.21 -2.07 16 23 C -0.08 -2.24 7.61 22.52 0.17 -2.07 16 24 H 0.07 2.27 5.89 -2.39 -0.01 2.26 16 25 H 0.06 2.57 6.75 -2.39 -0.02 2.56 16 26 H 0.07 2.57 6.33 -2.39 -0.02 2.55 16 27 H 0.28 12.66 8.31 -92.71 -0.77 11.89 16 28 H 0.13 4.57 7.95 -2.91 -0.02 4.55 16 29 H 0.14 3.90 7.72 -2.91 -0.02 3.88 16 30 H 0.24 0.78 7.16 -2.91 -0.02 0.76 16 31 H 0.23 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.18 2.00 6.82 -2.91 -0.02 1.98 16 33 H 0.16 4.46 5.00 -2.91 -0.01 4.45 16 Total: -1.00 -73.29 287.50 6.02 -67.27 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.16 Total: 10.54 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.62 Total: 2.39 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -2.73 Total: -85.28 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.07 Total: -37.33 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -73.29 6.02 -67.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341116874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.910 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds