Wall clock time and date at job start Mon Mar 30 2020 01:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34835 * 126.59025 * 2 1 4 4 C 1.36681 * 106.82241 * 180.26034 * 3 2 1 5 5 C 1.47401 * 125.77993 * 180.02562 * 4 3 2 6 6 O 1.21616 * 120.00114 * 352.79141 * 5 4 3 7 7 N 1.34786 * 120.00013 * 172.78665 * 5 4 3 8 8 C 1.36997 * 119.99926 * 176.89533 * 7 5 4 9 9 H 1.08003 * 119.99993 * 109.17002 * 8 7 5 10 10 C 1.38925 * 119.99745 * 289.17297 * 8 7 5 11 11 N 1.31417 * 119.99903 * 324.05892 * 10 8 7 12 12 Si 1.86795 * 120.00091 * 144.06469 * 10 8 7 13 13 H 1.48505 * 109.47183 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47477 * 119.99937 * 12 10 8 15 15 H 1.48502 * 109.47385 * 239.99749 * 12 10 8 16 16 C 1.39700 * 119.99653 * 356.89470 * 7 5 4 17 17 C 1.38983 * 120.07915 * 257.90939 * 16 7 5 18 18 C 1.38079 * 119.91893 * 179.72520 * 17 16 7 19 19 C 1.38312 * 120.07797 * 0.55650 * 18 17 16 20 20 C 1.38308 * 120.16373 * 359.72056 * 19 18 17 21 21 C 1.38086 * 120.07723 * 0.02562 * 20 19 18 22 22 N 1.34432 * 108.44290 * 359.97438 * 4 3 2 23 23 N 1.28765 * 109.52350 * 359.97438 * 22 4 3 24 24 H 1.09003 * 109.47217 * 269.71372 * 1 2 3 25 25 H 1.08994 * 109.46914 * 29.71591 * 1 2 3 26 26 H 1.08999 * 109.46645 * 149.71778 * 1 2 3 27 27 H 1.07997 * 126.58562 * 0.23609 * 3 2 1 28 28 H 0.97002 * 119.99538 * 185.01545 * 11 10 8 29 29 H 1.07994 * 120.04012 * 359.97438 * 17 16 7 30 30 H 1.07996 * 119.96457 * 180.29608 * 18 17 16 31 31 H 1.08002 * 119.92259 * 179.70083 * 19 18 17 32 32 H 1.07996 * 119.96372 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.03821 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2688 1.0826 0.0000 4 6 3.5551 0.6204 -0.0059 5 6 4.7705 1.4542 -0.0076 6 8 4.6804 2.6603 -0.1357 7 7 5.9819 0.8801 0.1330 8 6 7.1151 1.6471 0.0677 9 1 7.6950 1.8308 0.9602 10 6 7.5183 2.1888 -1.1464 11 7 7.3464 1.5097 -2.2583 12 14 8.3050 3.8822 -1.1984 13 1 8.3841 4.4338 0.1782 14 1 9.6719 3.7758 -1.7688 15 1 7.4839 4.7837 -2.0459 16 6 6.0817 -0.4971 0.3451 17 6 6.3308 -0.9891 1.6209 18 6 6.4231 -2.3512 1.8278 19 6 6.2796 -3.2250 0.7654 20 6 6.0373 -2.7388 -0.5066 21 6 5.9385 -1.3782 -0.7201 22 7 3.5240 -0.7236 -0.0089 23 7 2.3008 -1.1258 -0.0046 24 1 -0.3634 -0.0051 1.0277 25 1 -0.3633 0.8925 -0.5094 26 1 -0.3632 -0.8875 -0.5182 27 1 1.9562 2.1164 0.0036 28 1 7.6929 1.8550 -3.0959 29 1 6.4479 -0.3071 2.4500 30 1 6.6119 -2.7345 2.8197 31 1 6.3571 -4.2897 0.9293 32 1 5.9262 -3.4240 -1.3339 33 1 5.7498 -0.9991 -1.7137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341652310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:33 Heat of formation + Delta-G solvation = 115.696575 kcal Electronic energy + Delta-G solvation = -20803.272726 eV Core-core repulsion = 17639.472641 eV Total energy + Delta-G solvation = -3163.800086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63501 -38.97060 -37.29226 -34.38111 -34.19455 -32.03602 -30.32295 -29.95971 -28.45796 -27.68666 -25.08999 -22.77949 -21.84608 -21.48449 -21.37500 -19.52366 -17.43334 -17.26645 -15.83390 -15.78323 -15.22619 -15.06578 -14.45515 -14.14098 -13.94456 -13.65634 -13.39095 -13.23690 -12.70813 -12.57043 -12.46315 -11.83415 -11.65504 -11.52989 -11.15162 -10.84936 -10.62810 -10.54689 -10.28438 -10.16906 -9.96845 -8.92110 -8.70261 -8.62006 -7.93861 -7.62454 -7.21764 -6.31965 -4.17610 1.58915 2.29970 2.36217 2.44060 2.56461 3.27185 3.39545 3.46374 4.15523 4.42977 4.48380 4.73087 4.81983 4.87976 4.95107 5.02621 5.20294 5.36536 5.59539 5.73144 5.76695 5.84198 5.96987 6.32596 6.39539 6.52208 6.71949 6.83923 6.98496 7.28312 7.40739 7.58176 7.68481 7.87077 8.36370 8.49656 8.89949 8.97953 9.36723 10.02019 10.65544 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.008693 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.307189 B = 3220.038770 C = 4495.170661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.376 5.376 3 C 0.070 3.930 4 C -0.079 4.079 5 C 0.575 3.425 6 O -0.551 6.551 7 N -0.399 5.399 8 C -0.365 4.365 9 H 0.082 0.918 10 C 0.090 3.910 11 N -0.827 5.827 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.286 1.286 15 H -0.278 1.278 16 C 0.176 3.824 17 C -0.128 4.128 18 C -0.125 4.125 19 C -0.140 4.140 20 C -0.118 4.118 21 C -0.070 4.070 22 N -0.184 5.184 23 N -0.086 5.086 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.198 0.802 28 H 0.270 0.730 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 -4.834 3.547 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 C -0.086 4.086 4 C -0.218 4.218 5 C 0.361 3.639 6 O -0.430 6.430 7 N -0.117 5.117 8 C -0.489 4.489 9 H 0.099 0.901 10 C -0.123 4.123 11 N -0.457 5.457 12 Si 0.733 3.267 13 H -0.188 1.188 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.086 3.914 17 C -0.148 4.148 18 C -0.143 4.143 19 C -0.158 4.158 20 C -0.137 4.137 21 C -0.090 4.090 22 N -0.057 5.057 23 N -0.066 5.066 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.215 0.785 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.694 -5.700 3.249 12.546 hybrid contribution 0.103 1.784 -0.288 1.810 sum -10.591 -3.916 2.961 11.674 Atomic orbital electron populations 1.22013 0.73731 1.05071 1.04025 1.50314 1.08471 1.06102 1.51366 1.23288 0.90517 0.94478 1.00296 1.22198 0.95427 0.90377 1.13827 1.17227 0.81412 0.86086 0.79182 1.90624 1.85738 1.13700 1.52910 1.40525 1.04305 1.02580 1.64282 1.18717 1.05026 1.30616 0.94560 0.90075 1.25577 0.94168 0.97606 0.94970 1.70104 1.39992 1.35462 1.00172 0.86277 0.77390 0.83921 0.79115 1.18800 1.21253 1.20319 1.18137 0.95487 0.85877 0.91899 1.21130 1.02221 0.95016 0.96418 1.20713 1.02535 0.93077 0.98019 1.20809 1.03386 0.98321 0.93283 1.20796 1.01452 0.95021 0.96390 1.21185 0.96755 0.92444 0.98587 1.75052 1.11064 1.10514 1.09028 1.81948 0.94264 1.06790 1.23642 0.89910 0.89011 0.88665 0.78542 0.92066 0.87226 0.87437 0.87607 0.87454 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.51 59.85 0.69 1.43 16 2 N -0.38 -5.49 4.03 -67.82 -0.27 -5.76 16 3 C 0.07 1.17 11.32 -16.80 -0.19 0.98 16 4 C -0.08 -1.71 6.69 -83.56 -0.56 -2.27 16 5 C 0.57 14.89 7.48 -12.53 -0.09 14.80 16 6 O -0.55 -15.39 16.65 5.26 0.09 -15.30 16 7 N -0.40 -10.61 2.43 -60.11 -0.15 -10.76 16 8 C -0.36 -10.30 8.33 -14.99 -0.12 -10.43 16 9 H 0.08 2.27 8.03 -52.48 -0.42 1.85 16 10 C 0.09 2.51 5.06 -17.47 -0.09 2.42 16 11 N -0.83 -23.52 13.83 55.49 0.77 -22.75 16 12 Si 0.91 21.85 29.68 -169.99 -5.04 16.80 16 13 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.18 4.22 3.36 -83.72 -0.28 3.94 16 17 C -0.13 -2.75 9.96 -39.36 -0.39 -3.14 16 18 C -0.12 -2.30 10.04 -39.61 -0.40 -2.70 16 19 C -0.14 -2.49 10.04 -39.53 -0.40 -2.89 16 20 C -0.12 -2.29 10.04 -39.61 -0.40 -2.69 16 21 C -0.07 -1.60 7.73 -39.36 -0.30 -1.91 16 22 N -0.18 -3.89 8.43 32.84 0.28 -3.61 16 23 N -0.09 -1.60 13.78 60.35 0.83 -0.76 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.20 2.65 8.06 -52.49 -0.42 2.23 16 28 H 0.27 7.15 8.32 -40.82 -0.34 6.81 16 29 H 0.11 2.28 8.06 -52.49 -0.42 1.85 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.12 2.90 8.06 -52.49 -0.42 2.47 16 LS Contribution 300.85 15.07 4.53 4.53 Total: -1.00 -34.27 300.85 -4.87 -39.14 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -3.36 Total: 0.91 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.54 Total: -2.44 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.46 Total: -43.65 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.09 Total: -15.30 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.04 Total: 16.80 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.27 -4.87 -39.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341652310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.837 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds