Wall clock time and date at job start Mon Mar 30 2020 01:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34835 * 126.59025 * 2 1 4 4 C 1.36681 * 106.82241 * 180.26034 * 3 2 1 5 5 C 1.47401 * 125.77993 * 180.02562 * 4 3 2 6 6 O 1.21616 * 120.00114 * 352.79141 * 5 4 3 7 7 N 1.34786 * 120.00013 * 172.78665 * 5 4 3 8 8 C 1.36997 * 119.99926 * 176.89533 * 7 5 4 9 9 H 1.08003 * 119.99993 * 109.17002 * 8 7 5 10 10 C 1.38925 * 119.99745 * 289.17297 * 8 7 5 11 11 N 1.31417 * 119.99903 * 324.05892 * 10 8 7 12 12 Si 1.86795 * 120.00091 * 144.06469 * 10 8 7 13 13 H 1.48505 * 109.47183 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47477 * 119.99937 * 12 10 8 15 15 H 1.48502 * 109.47385 * 239.99749 * 12 10 8 16 16 C 1.39700 * 119.99653 * 356.89470 * 7 5 4 17 17 C 1.38983 * 120.07915 * 257.90939 * 16 7 5 18 18 C 1.38079 * 119.91893 * 179.72520 * 17 16 7 19 19 C 1.38312 * 120.07797 * 0.55650 * 18 17 16 20 20 C 1.38308 * 120.16373 * 359.72056 * 19 18 17 21 21 C 1.38086 * 120.07723 * 0.02562 * 20 19 18 22 22 N 1.34432 * 108.44290 * 359.97438 * 4 3 2 23 23 N 1.28765 * 109.52350 * 359.97438 * 22 4 3 24 24 H 1.09003 * 109.47217 * 269.71372 * 1 2 3 25 25 H 1.08994 * 109.46914 * 29.71591 * 1 2 3 26 26 H 1.08999 * 109.46645 * 149.71778 * 1 2 3 27 27 H 1.07997 * 126.58562 * 0.23609 * 3 2 1 28 28 H 0.97002 * 119.99538 * 185.01545 * 11 10 8 29 29 H 1.07994 * 120.04012 * 359.97438 * 17 16 7 30 30 H 1.07996 * 119.96457 * 180.29608 * 18 17 16 31 31 H 1.08002 * 119.92259 * 179.70083 * 19 18 17 32 32 H 1.07996 * 119.96372 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.03821 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2688 1.0826 0.0000 4 6 3.5551 0.6204 -0.0059 5 6 4.7705 1.4542 -0.0076 6 8 4.6804 2.6603 -0.1357 7 7 5.9819 0.8801 0.1330 8 6 7.1151 1.6471 0.0677 9 1 7.6950 1.8308 0.9602 10 6 7.5183 2.1888 -1.1464 11 7 7.3464 1.5097 -2.2583 12 14 8.3050 3.8822 -1.1984 13 1 8.3841 4.4338 0.1782 14 1 9.6719 3.7758 -1.7688 15 1 7.4839 4.7837 -2.0459 16 6 6.0817 -0.4971 0.3451 17 6 6.3308 -0.9891 1.6209 18 6 6.4231 -2.3512 1.8278 19 6 6.2796 -3.2250 0.7654 20 6 6.0373 -2.7388 -0.5066 21 6 5.9385 -1.3782 -0.7201 22 7 3.5240 -0.7236 -0.0089 23 7 2.3008 -1.1258 -0.0046 24 1 -0.3634 -0.0051 1.0277 25 1 -0.3633 0.8925 -0.5094 26 1 -0.3632 -0.8875 -0.5182 27 1 1.9562 2.1164 0.0036 28 1 7.6929 1.8550 -3.0959 29 1 6.4479 -0.3071 2.4500 30 1 6.6119 -2.7345 2.8197 31 1 6.3571 -4.2897 0.9293 32 1 5.9262 -3.4240 -1.3339 33 1 5.7498 -0.9991 -1.7137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341652310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:32 Heat of formation + Delta-G solvation = 92.608973 kcal Electronic energy + Delta-G solvation = -20804.273880 eV Core-core repulsion = 17639.472641 eV Total energy + Delta-G solvation = -3164.801240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.04300 -40.73823 -39.04538 -36.24759 -35.44688 -34.04453 -31.80529 -31.53829 -30.16921 -28.75069 -26.99019 -24.47821 -23.29407 -23.00701 -22.89489 -21.23061 -19.23456 -18.88627 -17.30243 -17.20474 -16.91001 -16.71830 -16.18860 -15.89701 -15.50105 -15.27131 -14.81289 -14.53924 -14.06038 -13.98179 -13.89532 -13.64119 -13.37217 -13.19766 -12.90600 -12.73954 -12.23699 -12.12134 -11.95453 -11.83502 -11.17504 -10.86266 -10.69979 -10.19069 -9.53814 -9.39083 -9.11050 -8.36715 -6.32598 0.26665 0.69509 0.78105 0.96499 1.30305 1.35680 1.42620 1.54292 2.21754 2.58791 2.79341 3.02017 3.22368 3.46425 3.66248 3.97884 4.13988 4.27970 4.33322 4.40927 4.45871 4.56840 4.68487 4.81372 4.89602 4.93884 5.21288 5.38425 5.45261 5.59142 5.73533 5.83078 5.99023 6.23074 6.38577 6.80760 6.94296 7.14783 7.38325 8.03771 8.57963 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.008693 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.307189 B = 3220.038770 C = 4495.170661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.354 5.354 3 C 0.095 3.905 4 C -0.124 4.124 5 C 0.564 3.436 6 O -0.590 6.590 7 N -0.412 5.412 8 C -0.389 4.389 9 H 0.070 0.930 10 C 0.049 3.951 11 N -0.859 5.859 12 Si 0.966 3.034 13 H -0.263 1.263 14 H -0.266 1.266 15 H -0.283 1.283 16 C 0.150 3.850 17 C -0.145 4.145 18 C -0.115 4.115 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.087 4.087 22 N -0.204 5.204 23 N -0.099 5.099 24 H 0.108 0.892 25 H 0.125 0.875 26 H 0.109 0.891 27 H 0.230 0.770 28 H 0.274 0.726 29 H 0.105 0.895 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.180 -6.217 4.400 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.140 5.140 3 C -0.063 4.063 4 C -0.264 4.264 5 C 0.353 3.647 6 O -0.472 6.472 7 N -0.129 5.129 8 C -0.514 4.514 9 H 0.088 0.912 10 C -0.162 4.162 11 N -0.490 5.490 12 Si 0.789 3.211 13 H -0.187 1.187 14 H -0.191 1.191 15 H -0.209 1.209 16 C 0.061 3.939 17 C -0.165 4.165 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.135 4.135 21 C -0.107 4.107 22 N -0.076 5.076 23 N -0.080 5.080 24 H 0.127 0.873 25 H 0.143 0.857 26 H 0.128 0.872 27 H 0.246 0.754 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.164 0.836 31 H 0.169 0.831 32 H 0.150 0.850 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.261 -7.136 4.112 14.770 hybrid contribution 0.397 2.095 -0.496 2.190 sum -11.864 -5.041 3.616 13.388 Atomic orbital electron populations 1.22670 0.69438 1.07525 1.06466 1.50689 1.10489 1.04360 1.48420 1.23635 0.89067 0.96087 0.97530 1.21811 0.95508 0.90852 1.18192 1.17724 0.82609 0.86263 0.78152 1.90551 1.86649 1.15203 1.54788 1.40669 1.04210 1.03806 1.64187 1.18841 1.05998 1.32072 0.94468 0.91210 1.26332 0.94979 1.00281 0.94564 1.70158 1.41468 1.36692 1.00676 0.85388 0.77378 0.79407 0.78951 1.18683 1.19087 1.20861 1.18274 0.97677 0.84710 0.93282 1.21243 1.03214 0.96736 0.95287 1.21137 1.00401 0.91583 1.00170 1.21281 1.00795 1.00506 0.91903 1.21098 1.00361 0.93714 0.98360 1.20952 0.98966 0.94080 0.96669 1.75012 1.12434 1.10390 1.09798 1.81804 0.94001 1.08213 1.23962 0.87347 0.85691 0.87215 0.75352 0.91697 0.87731 0.83566 0.83080 0.85002 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 11.51 127.77 1.47 2.39 16 2 N -0.35 -9.51 4.03 -368.49 -1.49 -10.99 16 3 C 0.09 3.06 11.32 83.87 0.95 4.01 16 4 C -0.12 -5.49 6.69 40.80 0.27 -5.22 16 5 C 0.56 30.67 7.48 86.65 0.65 31.32 16 6 O -0.59 -34.45 16.65 -4.08 -0.07 -34.52 16 7 N -0.41 -23.06 2.43 -462.33 -1.12 -24.18 16 8 C -0.39 -23.10 8.33 84.05 0.70 -22.40 16 9 H 0.07 4.15 8.03 -2.91 -0.02 4.12 16 10 C 0.05 2.81 5.06 84.92 0.43 3.24 16 11 N -0.86 -50.96 13.83 21.66 0.30 -50.67 16 12 Si 0.97 46.21 29.68 68.60 2.04 48.25 16 13 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 16 C 0.15 7.48 3.36 38.24 0.13 7.61 16 17 C -0.15 -6.29 9.96 22.41 0.22 -6.06 16 18 C -0.11 -3.95 10.04 22.25 0.22 -3.73 16 19 C -0.13 -4.13 10.04 22.30 0.22 -3.90 16 20 C -0.12 -4.42 10.04 22.25 0.22 -4.20 16 21 C -0.09 -4.11 7.73 22.41 0.17 -3.94 16 22 N -0.20 -8.73 8.43 -50.02 -0.42 -9.15 16 23 N -0.10 -3.56 13.78 37.02 0.51 -3.05 16 24 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.23 5.69 8.06 -2.91 -0.02 5.67 16 28 H 0.27 15.07 8.32 -92.71 -0.77 14.30 16 29 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 31 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.08 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -80.27 300.85 6.54 -73.73 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.13 Total: 11.46 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.67 Total: -0.88 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -2.22 Total: -98.03 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.07 Total: -34.52 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.04 Total: 48.25 kcal Total: -80.27 6.54 -73.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341652310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.335 kcal (2) G-P(sol) polarization free energy of solvation -80.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds