Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99904 * 2 1 4 4 C 1.50700 * 109.47126 * 269.99758 * 3 2 1 5 5 H 1.08000 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99839 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00125 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99981 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47059 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47415 * 120.00067 * 8 6 4 11 11 H 1.48497 * 109.46961 * 239.99919 * 8 6 4 12 12 C 1.34770 * 119.99741 * 180.02562 * 2 1 3 13 13 O 1.21481 * 120.00274 * 181.99190 * 12 2 1 14 14 C 1.48438 * 120.00283 * 1.99116 * 12 2 1 15 15 N 1.33496 * 119.21709 * 352.09536 * 14 12 2 16 16 N 1.28918 * 122.01849 * 179.97438 * 15 14 12 17 17 C 1.33811 * 119.75020 * 0.05657 * 16 15 14 18 18 C 1.40330 * 121.78194 * 179.97438 * 17 16 15 19 19 C 1.36191 * 119.62949 * 180.02562 * 18 17 16 20 20 C 1.39447 * 121.06665 * 359.97438 * 19 18 17 21 21 C 1.36139 * 121.01164 * 0.02562 * 20 19 18 22 22 C 1.40508 * 119.56506 * 359.97438 * 21 20 19 23 23 N 1.32057 * 119.22158 * 172.12618 * 14 12 2 24 24 H 1.08994 * 109.46693 * 263.70740 * 1 2 3 25 25 H 1.09001 * 109.46594 * 23.69769 * 1 2 3 26 26 H 1.08996 * 109.47428 * 143.70261 * 1 2 3 27 27 H 1.08997 * 109.47538 * 30.00207 * 3 2 1 28 28 H 1.09002 * 109.46692 * 150.00578 * 3 2 1 29 29 H 0.97000 * 120.00121 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.19186 * 359.97438 * 18 17 16 31 31 H 1.07995 * 119.47058 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.49492 * 179.72602 * 20 19 18 33 33 H 1.08001 * 120.21625 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5551 3.6170 -0.6731 8 14 3.4378 3.4170 -3.4339 9 1 2.8599 2.4170 -4.3673 10 1 2.8008 4.7381 -3.6666 11 1 4.9002 3.5246 -3.6678 12 6 2.1389 -1.1672 -0.0005 13 8 3.3531 -1.1676 0.0360 14 6 1.3974 -2.4523 -0.0458 15 7 0.0679 -2.4421 0.0747 16 7 -0.6297 -3.5258 0.0426 17 6 -0.0174 -4.7051 -0.1146 18 6 -0.7346 -5.9106 -0.1551 19 6 -0.0666 -7.0864 -0.3164 20 6 1.3219 -7.1137 -0.4430 21 6 2.0520 -5.9652 -0.4087 22 6 1.3980 -4.7326 -0.2437 23 7 2.0685 -3.5786 -0.2036 24 1 -0.3632 -0.1126 1.0214 25 1 -0.3632 0.9410 -0.4130 26 1 -0.3634 -0.8282 -0.6083 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.0326 4.4426 -0.8503 30 1 -1.8103 -5.9062 -0.0580 31 1 -0.6210 -8.0127 -0.3467 32 1 1.8262 -8.0609 -0.5654 33 1 3.1269 -6.0013 -0.5076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343164557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = 88.751428 kcal Electronic energy + Delta-G solvation = -19832.300568 eV Core-core repulsion = 16667.332053 eV Total energy + Delta-G solvation = -3164.968515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.11878 -39.14650 -37.98302 -35.56313 -34.76715 -32.82094 -32.01954 -31.16136 -28.10855 -26.47502 -26.16025 -25.11850 -22.99113 -22.80185 -20.32296 -19.40667 -18.56185 -16.77298 -16.61106 -16.21038 -16.02171 -15.38523 -15.18191 -14.57611 -14.37818 -14.29266 -13.40847 -13.07467 -12.77635 -12.58478 -12.47178 -12.24304 -12.14901 -12.04816 -11.88182 -11.30780 -10.99456 -10.78002 -10.54388 -10.19769 -9.85538 -9.60615 -9.42998 -9.20504 -9.02109 -8.44771 -7.70960 -6.05747 -4.10875 -0.45655 -0.00682 1.40925 2.21877 3.05927 3.26523 3.30793 3.38230 3.41148 3.43384 3.71828 3.88210 4.11894 4.34484 4.36471 4.46852 4.63767 4.82764 4.95560 5.21621 5.29224 5.41209 5.59339 5.60770 5.83537 6.01184 6.16060 6.19773 6.54902 6.71507 7.01322 7.35996 7.45663 7.89661 8.08750 8.18307 8.26335 8.75078 8.95638 9.54073 11.02428 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033977 B = 0.004185 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.883550 B = 6689.552634 C = 6917.345929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.571 5.571 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.568 3.432 13 O -0.503 6.503 14 C 0.232 3.768 15 N -0.225 5.225 16 N -0.153 5.153 17 C 0.013 3.987 18 C -0.066 4.066 19 C -0.097 4.097 20 C -0.077 4.077 21 C -0.086 4.086 22 C 0.132 3.868 23 N -0.398 5.398 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -21.493 1.503 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.303 5.303 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.348 3.652 13 O -0.376 6.376 14 C -0.040 4.040 15 N -0.086 5.086 16 N -0.016 5.016 17 C -0.120 4.120 18 C -0.088 4.088 19 C -0.118 4.118 20 C -0.099 4.099 21 C -0.105 4.105 22 C -0.008 4.008 23 N -0.120 5.120 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.245 -20.327 1.686 22.394 hybrid contribution 0.493 -0.385 -1.087 1.254 sum -8.752 -20.711 0.599 22.493 Atomic orbital electron populations 1.22209 0.79650 1.03140 1.01589 1.48105 1.07486 1.06571 1.68116 1.19496 0.92773 0.77200 0.97986 1.21449 1.36773 1.06540 0.92052 0.92253 1.24923 0.95201 0.96260 0.97589 1.69939 1.38182 1.14358 1.30704 0.86409 0.78096 0.78336 0.84402 1.19802 1.20858 1.20806 1.17043 0.86454 0.81163 0.80566 1.90796 1.12113 1.85406 1.49265 1.25121 0.89187 0.95610 0.94062 1.74654 1.06191 1.18389 1.09351 1.74529 1.29454 0.94589 1.03028 1.20978 0.93522 0.96291 1.01169 1.20796 1.00979 0.89311 0.97703 1.21185 0.94530 0.98494 0.97557 1.21212 0.94094 0.98710 0.95908 1.20946 1.01609 0.89122 0.98853 1.19814 0.90916 0.94004 0.96045 1.69197 1.38283 0.97271 1.07282 0.93000 0.90917 0.89618 0.94028 0.93369 0.92660 0.83350 0.83984 0.83896 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 9.27 59.85 0.55 1.98 16 2 N -0.57 -13.12 2.86 -183.86 -0.53 -13.65 16 3 C 0.24 6.51 5.15 -5.19 -0.03 6.49 16 4 C -0.53 -15.25 9.39 -34.44 -0.32 -15.58 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.57 13.31 7.70 -12.06 -0.09 13.22 16 13 O -0.50 -13.57 16.44 5.38 0.09 -13.48 16 14 C 0.23 4.59 7.52 -156.56 -1.18 3.42 16 15 N -0.22 -3.94 7.21 32.10 0.23 -3.71 16 16 N -0.15 -2.33 11.68 32.27 0.38 -1.95 16 17 C 0.01 0.18 6.68 -84.71 -0.57 -0.39 16 18 C -0.07 -0.56 10.00 -39.53 -0.40 -0.95 16 19 C -0.10 -0.57 9.95 -39.87 -0.40 -0.96 16 20 C -0.08 -0.49 9.95 -39.89 -0.40 -0.89 16 21 C -0.09 -0.86 10.01 -39.48 -0.40 -1.26 16 22 C 0.13 1.89 6.61 -84.77 -0.56 1.33 16 23 N -0.40 -7.39 10.23 -8.99 -0.09 -7.48 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.29 8.02 -51.93 -0.42 0.88 16 26 H 0.09 1.51 5.28 -52.39 -0.28 1.23 16 27 H 0.04 1.10 8.07 -51.93 -0.42 0.68 16 28 H 0.05 1.42 7.39 -51.93 -0.38 1.04 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 30 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 31 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 32 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 33 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -34.85 295.49 -6.78 -41.63 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: -3.15 Total: -5.13 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -3.87 Total: 8.11 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.73 Total: -52.63 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.85 -6.78 -41.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343164557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.380 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds