Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99904 * 2 1 4 4 C 1.50700 * 109.47126 * 269.99758 * 3 2 1 5 5 H 1.08000 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99839 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00125 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99981 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47059 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47415 * 120.00067 * 8 6 4 11 11 H 1.48497 * 109.46961 * 239.99919 * 8 6 4 12 12 C 1.34770 * 119.99741 * 180.02562 * 2 1 3 13 13 O 1.21481 * 120.00274 * 181.99190 * 12 2 1 14 14 C 1.48438 * 120.00283 * 1.99116 * 12 2 1 15 15 N 1.33496 * 119.21709 * 352.09536 * 14 12 2 16 16 N 1.28918 * 122.01849 * 179.97438 * 15 14 12 17 17 C 1.33811 * 119.75020 * 0.05657 * 16 15 14 18 18 C 1.40330 * 121.78194 * 179.97438 * 17 16 15 19 19 C 1.36191 * 119.62949 * 180.02562 * 18 17 16 20 20 C 1.39447 * 121.06665 * 359.97438 * 19 18 17 21 21 C 1.36139 * 121.01164 * 0.02562 * 20 19 18 22 22 C 1.40508 * 119.56506 * 359.97438 * 21 20 19 23 23 N 1.32057 * 119.22158 * 172.12618 * 14 12 2 24 24 H 1.08994 * 109.46693 * 263.70740 * 1 2 3 25 25 H 1.09001 * 109.46594 * 23.69769 * 1 2 3 26 26 H 1.08996 * 109.47428 * 143.70261 * 1 2 3 27 27 H 1.08997 * 109.47538 * 30.00207 * 3 2 1 28 28 H 1.09002 * 109.46692 * 150.00578 * 3 2 1 29 29 H 0.97000 * 120.00121 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.19186 * 359.97438 * 18 17 16 31 31 H 1.07995 * 119.47058 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.49492 * 179.72602 * 20 19 18 33 33 H 1.08001 * 120.21625 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5551 3.6170 -0.6731 8 14 3.4378 3.4170 -3.4339 9 1 2.8599 2.4170 -4.3673 10 1 2.8008 4.7381 -3.6666 11 1 4.9002 3.5246 -3.6678 12 6 2.1389 -1.1672 -0.0005 13 8 3.3531 -1.1676 0.0360 14 6 1.3974 -2.4523 -0.0458 15 7 0.0679 -2.4421 0.0747 16 7 -0.6297 -3.5258 0.0426 17 6 -0.0174 -4.7051 -0.1146 18 6 -0.7346 -5.9106 -0.1551 19 6 -0.0666 -7.0864 -0.3164 20 6 1.3219 -7.1137 -0.4430 21 6 2.0520 -5.9652 -0.4087 22 6 1.3980 -4.7326 -0.2437 23 7 2.0685 -3.5786 -0.2036 24 1 -0.3632 -0.1126 1.0214 25 1 -0.3632 0.9410 -0.4130 26 1 -0.3634 -0.8282 -0.6083 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.0326 4.4426 -0.8503 30 1 -1.8103 -5.9062 -0.0580 31 1 -0.6210 -8.0127 -0.3467 32 1 1.8262 -8.0609 -0.5654 33 1 3.1269 -6.0013 -0.5076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343164557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = 63.424277 kcal Electronic energy + Delta-G solvation = -19833.398836 eV Core-core repulsion = 16667.332053 eV Total energy + Delta-G solvation = -3166.066783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.22959 -40.74524 -39.01426 -37.06251 -36.29265 -34.85726 -33.19454 -32.02246 -30.00368 -27.88657 -27.46621 -26.52950 -24.85331 -23.63512 -21.75550 -20.50324 -19.78660 -18.76647 -18.10283 -17.46419 -17.29198 -17.09850 -16.33416 -15.99192 -15.89887 -15.35977 -14.86530 -14.46800 -14.38764 -13.91397 -13.65179 -13.60491 -13.45667 -13.13684 -13.07384 -13.05811 -12.88768 -12.62106 -12.28681 -12.07151 -11.73020 -11.11411 -10.69946 -10.67315 -10.54216 -9.86161 -9.57482 -8.26467 -6.41656 -1.42969 -1.07843 0.53625 1.12443 1.35832 1.38157 1.49392 1.58644 1.96759 2.29323 2.36655 2.67450 2.69014 2.92345 3.03957 3.25098 3.59991 3.76918 3.99608 4.20720 4.42152 4.46477 4.70813 4.73514 4.83048 4.89502 5.03335 5.09359 5.13651 5.19080 5.45167 5.54437 5.68073 5.73955 5.97558 6.39350 6.64068 6.89388 7.05133 7.29197 8.81635 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033977 B = 0.004185 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.883550 B = 6689.552634 C = 6917.345929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.577 5.577 3 C 0.258 3.742 4 C -0.550 4.550 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.265 1.265 11 H -0.278 1.278 12 C 0.564 3.436 13 O -0.558 6.558 14 C 0.206 3.794 15 N -0.239 5.239 16 N -0.163 5.163 17 C 0.010 3.990 18 C -0.076 4.076 19 C -0.062 4.062 20 C -0.037 4.037 21 C -0.113 4.113 22 C 0.111 3.889 23 N -0.433 5.433 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.008 0.992 29 H 0.270 0.730 30 H 0.176 0.824 31 H 0.198 0.802 32 H 0.194 0.806 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.681 -25.677 0.281 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.307 5.307 3 C 0.138 3.862 4 C -0.588 4.588 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.190 1.190 11 H -0.204 1.204 12 C 0.346 3.654 13 O -0.435 6.435 14 C -0.066 4.066 15 N -0.100 5.100 16 N -0.024 5.024 17 C -0.124 4.124 18 C -0.097 4.097 19 C -0.082 4.082 20 C -0.059 4.059 21 C -0.133 4.133 22 C -0.028 4.028 23 N -0.155 5.155 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.193 0.807 31 H 0.215 0.785 32 H 0.211 0.789 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.298 -24.494 0.477 26.978 hybrid contribution 1.030 0.442 -0.672 1.307 sum -10.267 -24.052 -0.195 26.153 Atomic orbital electron populations 1.22375 0.76829 1.03730 1.03141 1.48075 1.09154 1.05530 1.67981 1.19035 0.91452 0.78906 0.96843 1.21657 1.37590 1.07026 0.92548 0.93089 1.25840 0.94538 0.96094 1.02271 1.70045 1.38462 1.14815 1.32996 0.85317 0.78041 0.78437 0.78688 1.19536 1.18951 1.20399 1.17533 0.86164 0.82569 0.79110 1.90725 1.14413 1.86667 1.51658 1.24032 0.89945 0.94231 0.98355 1.74487 1.04785 1.19813 1.10890 1.74388 1.29167 0.95119 1.03717 1.21555 0.93435 0.97063 1.00370 1.21265 1.02414 0.88130 0.97937 1.21906 0.94375 0.99422 0.92513 1.21894 0.94450 0.99012 0.90567 1.21228 1.02432 0.88720 1.00894 1.20452 0.91893 0.93918 0.96583 1.69025 1.39777 0.98336 1.08376 0.91072 0.90643 0.88514 0.94258 0.97393 0.92110 0.80683 0.78472 0.78920 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.13 9.27 127.77 1.18 4.31 16 2 N -0.58 -28.44 2.86 -853.90 -2.44 -30.87 16 3 C 0.26 14.77 5.15 85.63 0.44 15.21 16 4 C -0.55 -33.21 9.39 25.60 0.24 -32.97 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.72 5.46 84.65 0.46 1.18 16 7 N -0.92 -56.71 13.29 21.45 0.28 -56.42 16 8 Si 0.97 46.13 29.54 68.60 2.03 48.15 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 C 0.56 28.69 7.70 86.96 0.67 29.35 16 13 O -0.56 -32.89 16.44 -3.66 -0.06 -32.95 16 14 C 0.21 8.71 7.52 137.46 1.03 9.74 16 15 N -0.24 -8.74 7.21 -52.34 -0.38 -9.12 16 16 N -0.16 -4.93 11.68 -51.81 -0.61 -5.54 16 17 C 0.01 0.25 6.68 40.32 0.27 0.52 16 18 C -0.08 -0.92 10.00 22.30 0.22 -0.70 16 19 C -0.06 -0.28 9.95 22.08 0.22 -0.06 16 20 C -0.04 -0.24 9.95 22.07 0.22 -0.02 16 21 C -0.11 -1.98 10.01 22.33 0.22 -1.76 16 22 C 0.11 3.13 6.61 40.41 0.27 3.40 16 23 N -0.43 -16.98 10.23 -182.37 -1.87 -18.84 16 24 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.07 2.79 8.02 -2.39 -0.02 2.77 16 26 H 0.10 3.56 5.28 -2.98 -0.02 3.54 16 27 H 0.04 2.22 8.07 -2.39 -0.02 2.20 16 28 H 0.01 0.51 7.39 -2.39 -0.02 0.50 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.20 -1.01 8.06 -2.91 -0.02 -1.04 16 32 H 0.19 -0.49 8.06 -2.91 -0.02 -0.52 16 33 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -84.96 295.49 3.56 -81.40 By element: Atomic # 1 Polarization: -5.18 SS G_CDS: 1.14 Total: -4.03 kcal Atomic # 6 Polarization: 22.78 SS G_CDS: 5.45 Total: 28.23 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -5.00 Total: -120.80 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.06 Total: -32.95 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -84.96 3.56 -81.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343164557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.822 kcal (2) G-P(sol) polarization free energy of solvation -84.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds