Wall clock time and date at job start Mon Mar 30 2020 00:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86797 * 120.00352 * 2 1 4 4 H 1.48501 * 109.46955 * 275.00237 * 3 2 1 5 5 H 1.48500 * 109.47225 * 34.99716 * 3 2 1 6 6 H 1.48498 * 109.47298 * 154.99778 * 3 2 1 7 7 C 1.40117 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99689 * 174.93570 * 7 2 1 9 9 C 1.46198 * 120.00516 * 354.93268 * 7 2 1 10 10 O 1.21724 * 119.99749 * 5.06426 * 9 7 2 11 11 N 1.34773 * 120.00520 * 185.06068 * 9 7 2 12 12 C 1.39079 * 120.00261 * 185.11517 * 11 9 7 13 13 C 1.39170 * 119.70519 * 174.89085 * 12 11 9 14 14 C 1.38336 * 119.09445 * 179.72377 * 13 12 11 15 15 C 1.38861 * 118.49917 * 0.49527 * 14 13 12 16 16 C 1.50701 * 120.33752 * 179.78296 * 15 14 13 17 17 N 1.46497 * 109.46646 * 269.72049 * 16 15 14 18 18 C 1.36886 * 126.39872 * 270.01839 * 17 16 15 19 19 C 1.34665 * 106.82276 * 180.02562 * 18 17 16 20 20 N 1.34125 * 108.01537 * 0.02562 * 19 18 17 21 21 C 1.30493 * 109.26344 * 359.97438 * 20 19 18 22 22 C 1.38131 * 119.32362 * 359.50177 * 15 14 13 23 23 N 1.31896 * 120.85857 * 0.25404 * 22 15 14 24 24 H 0.96998 * 119.99277 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99821 * 5.11001 * 11 9 7 26 26 H 1.08000 * 120.45075 * 359.95107 * 13 12 11 27 27 H 1.07994 * 120.75169 * 180.24667 * 14 13 12 28 28 H 1.08988 * 109.47047 * 149.71812 * 16 15 14 29 29 H 1.08997 * 109.47070 * 29.71683 * 16 15 14 30 30 H 1.08008 * 126.58820 * 359.97438 * 18 17 16 31 31 H 1.07993 * 125.98974 * 180.02562 * 19 18 17 32 32 H 1.08001 * 125.65381 * 179.97438 * 21 20 19 33 33 H 1.08000 * 119.56935 * 180.23486 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3823 2.1073 -1.3948 5 1 1.4949 2.6199 0.8030 6 1 3.5869 1.4119 0.5917 7 6 2.0069 -1.2135 0.0005 8 1 3.0838 -1.2154 -0.0820 9 6 1.2802 -2.4771 0.1129 10 8 0.0630 -2.4812 0.1132 11 7 1.9580 -3.6375 0.2162 12 6 1.2707 -4.8466 0.2159 13 6 1.9809 -6.0435 0.2152 14 6 1.2846 -7.2388 0.2208 15 6 -0.1034 -7.1971 0.2164 16 6 -0.9033 -8.4743 0.2172 17 7 -1.1639 -8.8881 -1.1637 18 6 -2.2419 -8.5324 -1.9286 19 6 -2.0855 -9.1309 -3.1248 20 7 -0.9434 -9.8333 -3.0910 21 6 -0.3858 -9.6924 -1.9196 22 6 -0.7434 -5.9730 0.2171 23 7 -0.0535 -4.8488 0.2169 24 1 -0.4849 0.8401 0.0004 25 1 2.9251 -3.6293 0.2906 26 1 3.0609 -6.0391 0.2141 27 1 1.8086 -8.1831 0.2244 28 1 -1.8498 -8.3098 0.7320 29 1 -0.3414 -9.2546 0.7305 30 1 -3.0610 -7.8950 -1.6298 31 1 -2.7612 -9.0580 -3.9640 32 1 0.5435 -10.1448 -1.6063 33 1 -1.8228 -5.9359 0.2175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343341820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:36 Heat of formation + Delta-G solvation = 76.198434 kcal Electronic energy + Delta-G solvation = -19483.761458 eV Core-core repulsion = 16318.248604 eV Total energy + Delta-G solvation = -3165.512854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.96047 -39.97244 -37.40136 -34.84622 -33.32596 -32.49023 -31.88685 -30.02589 -29.32211 -26.94041 -25.56780 -23.56332 -22.21900 -21.20661 -20.83944 -20.05307 -17.90232 -17.43812 -16.72853 -15.95022 -15.85986 -15.19866 -14.37226 -14.28193 -14.14002 -14.04725 -13.85967 -13.63585 -13.21860 -12.77479 -12.62961 -12.47964 -12.22497 -11.80868 -11.34102 -11.14889 -10.69116 -10.36910 -10.03388 -9.77409 -9.61910 -9.44965 -8.96204 -8.90661 -8.45809 -7.56777 -7.43810 -6.36131 -4.84825 1.43800 1.68398 2.15522 2.96870 3.05203 3.11933 3.15730 3.24759 3.88361 4.16909 4.20147 4.52881 4.55441 4.71805 4.76985 4.93479 5.00190 5.10735 5.25129 5.43781 5.50967 5.64554 5.66723 5.75721 6.01483 6.18523 6.27970 6.44278 6.79078 6.85134 7.22531 7.25213 7.41548 7.80249 8.03553 8.12616 8.53065 8.81791 9.19586 10.38062 10.55041 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035329 B = 0.003705 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.354135 B = 7556.117216 C = 7843.686472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.527 3.473 10 O -0.508 6.508 11 N -0.669 5.669 12 C 0.404 3.596 13 C -0.243 4.243 14 C -0.024 4.024 15 C -0.251 4.251 16 C 0.165 3.835 17 N -0.451 5.451 18 C -0.049 4.049 19 C -0.037 4.037 20 N -0.501 5.501 21 C 0.179 3.821 22 C 0.164 3.836 23 N -0.471 5.471 24 H 0.272 0.728 25 H 0.400 0.600 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.199 0.801 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 -14.820 1.788 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.331 3.669 10 O -0.384 6.384 11 N -0.311 5.311 12 C 0.169 3.831 13 C -0.268 4.268 14 C -0.050 4.050 15 C -0.257 4.257 16 C 0.042 3.958 17 N -0.133 5.133 18 C -0.183 4.183 19 C -0.185 4.185 20 N -0.219 5.219 21 C -0.104 4.104 22 C 0.001 3.999 23 N -0.185 5.185 24 H 0.083 0.917 25 H 0.234 0.766 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.189 0.811 31 H 0.183 0.817 32 H 0.216 0.784 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.132 -14.109 1.276 14.167 hybrid contribution 1.171 0.565 0.690 1.472 sum 1.039 -13.544 1.967 13.725 Atomic orbital electron populations 1.69994 1.07161 1.27863 1.33595 1.25729 0.94709 1.00500 0.92599 0.86254 0.80177 0.80950 0.78853 1.19644 1.20200 1.18722 1.20845 0.94113 0.89008 1.53631 0.90998 1.18618 0.87970 0.81750 0.78518 1.90747 1.12925 1.84428 1.50257 1.44769 1.10142 1.04255 1.71912 1.19025 0.88873 0.86744 0.88465 1.21457 1.00620 0.91979 1.12724 1.20972 0.92915 0.97543 0.93611 1.20523 0.94694 0.95474 1.15009 1.20494 1.00958 0.94706 0.79607 1.45784 1.18222 1.36328 1.12948 1.22764 0.94895 1.06877 0.93771 1.22247 0.97395 1.01247 0.97608 1.70243 1.08907 1.23463 1.19327 1.24868 0.99298 0.98204 0.88003 1.22567 0.99788 0.86482 0.91034 1.68093 1.06225 1.28652 1.15556 0.91664 0.76566 0.85282 0.85632 0.88440 0.88510 0.81061 0.81681 0.78422 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.04 11.84 55.55 0.66 -21.38 16 2 C 0.09 2.31 5.50 -17.35 -0.10 2.21 16 3 Si 0.91 19.35 29.56 -169.99 -5.03 14.33 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.54 -14.63 9.53 -35.68 -0.34 -14.97 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.53 14.67 7.69 -13.07 -0.10 14.57 16 10 O -0.51 -16.12 13.29 5.17 0.07 -16.05 16 11 N -0.67 -14.81 5.37 -12.77 -0.07 -14.88 16 12 C 0.40 8.32 7.42 -154.92 -1.15 7.18 16 13 C -0.24 -3.76 9.94 -39.20 -0.39 -4.15 16 14 C -0.02 -0.31 9.85 -39.31 -0.39 -0.70 16 15 C -0.25 -3.31 5.48 -104.43 -0.57 -3.88 16 16 C 0.16 1.54 6.30 -5.19 -0.03 1.51 16 17 N -0.45 -5.13 2.73 -119.87 -0.33 -5.46 16 18 C -0.05 -0.59 11.58 -16.56 -0.19 -0.78 16 19 C -0.04 -0.49 11.87 -17.81 -0.21 -0.70 16 20 N -0.50 -7.32 11.25 -14.67 -0.17 -7.49 16 21 C 0.18 2.15 12.56 -90.38 -1.14 1.02 16 22 C 0.16 2.79 10.85 -17.56 -0.19 2.59 16 23 N -0.47 -10.53 7.88 -12.39 -0.10 -10.63 16 24 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 25 H 0.40 7.24 8.68 -40.82 -0.35 6.89 16 26 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.10 0.76 8.09 -51.94 -0.42 0.34 16 29 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 31 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -37.04 301.18 -8.49 -45.53 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.28 Total: 7.59 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -4.80 Total: 3.89 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.00 Total: -59.83 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.07 Total: -16.05 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -37.04 -8.49 -45.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343341820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.731 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds