Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28715 * 126.03690 * 2 1 4 4 N 1.28513 * 110.64923 * 180.02562 * 3 2 1 5 5 C 1.33320 * 109.44397 * 359.71877 * 4 3 2 6 6 C 1.37046 * 106.36359 * 0.43573 * 5 4 3 7 7 C 1.47185 * 127.19001 * 179.84530 * 6 5 4 8 8 O 1.21624 * 119.99946 * 185.11180 * 7 6 5 9 9 N 1.34770 * 119.99736 * 5.11361 * 7 6 5 10 10 C 1.39107 * 119.99844 * 187.69398 * 9 7 6 11 11 C 1.39513 * 119.83963 * 149.08892 * 10 9 7 12 12 C 1.36364 * 120.16813 * 180.25251 * 11 10 9 13 13 C 1.40881 * 119.82531 * 359.50378 * 12 11 10 14 14 C 1.41134 * 120.15601 * 180.24743 * 13 12 11 15 15 H 1.08002 * 119.99782 * 7.79765 * 14 13 12 16 16 C 1.39905 * 120.00177 * 187.79309 * 14 13 12 17 17 N 1.30868 * 119.99669 * 34.08240 * 16 14 13 18 18 Si 1.86799 * 120.00525 * 214.08939 * 16 14 13 19 19 H 1.48497 * 109.47211 * 59.99306 * 18 16 14 20 20 H 1.48500 * 109.47584 * 180.02562 * 18 16 14 21 21 H 1.48513 * 109.46612 * 299.99805 * 18 16 14 22 22 C 1.40871 * 119.68153 * 0.51628 * 13 12 11 23 23 C 1.36355 * 119.83378 * 359.73368 * 22 13 12 24 24 H 1.09000 * 109.47328 * 264.27591 * 1 2 3 25 25 H 1.08997 * 109.46893 * 24.28155 * 1 2 3 26 26 H 1.09003 * 109.46944 * 144.28330 * 1 2 3 27 27 H 1.07995 * 126.81485 * 180.29537 * 5 4 3 28 28 H 0.97001 * 120.00254 * 7.68944 * 9 7 6 29 29 H 1.08002 * 119.91405 * 359.97438 * 11 10 9 30 30 H 1.08002 * 120.08257 * 179.72641 * 12 11 10 31 31 H 0.97008 * 120.00275 * 179.97438 * 17 16 14 32 32 H 1.08000 * 120.08666 * 179.71310 * 22 13 12 33 33 H 1.07998 * 119.92378 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4613 0.6998 -0.0005 5 6 3.5556 -0.6300 0.0052 6 6 2.2713 -1.1082 -0.0005 7 6 1.8466 -2.5175 -0.0006 8 8 0.6672 -2.7972 -0.0999 9 7 2.7648 -3.4979 0.1094 10 6 2.3859 -4.8267 -0.0508 11 6 3.2930 -5.7490 -0.5733 12 6 2.9270 -7.0523 -0.7380 13 6 1.6326 -7.4685 -0.3692 14 6 1.2482 -8.8167 -0.5318 15 1 1.9808 -9.5562 -0.8195 16 6 -0.0820 -9.1953 -0.3201 17 7 -1.0529 -8.3730 -0.6263 18 14 -0.4721 -10.8743 0.3997 19 1 0.1532 -10.9953 1.7411 20 1 -1.9437 -11.0304 0.5230 21 1 0.0643 -11.9326 -0.4937 22 6 0.7220 -6.5314 0.1572 23 6 1.1005 -5.2305 0.3114 24 1 -0.3634 -0.1025 1.0225 25 1 -0.3633 0.9367 -0.4226 26 1 -0.3633 -0.8344 -0.5999 27 1 4.4638 -1.2144 0.0108 28 1 3.6898 -3.2769 0.3002 29 1 4.2861 -5.4291 -0.8522 30 1 3.6288 -7.7642 -1.1467 31 1 -1.9752 -8.6356 -0.4799 32 1 -0.2735 -6.8424 0.4378 33 1 0.4034 -4.5108 0.7145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344288942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = 91.329632 kcal Electronic energy + Delta-G solvation = -19655.620092 eV Core-core repulsion = 16490.763376 eV Total energy + Delta-G solvation = -3164.856716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.30616 -39.64806 -37.29297 -35.04665 -34.37173 -33.27254 -31.48801 -29.53133 -29.08774 -28.08889 -25.48479 -23.67966 -22.47008 -21.52029 -20.86603 -19.84304 -18.06080 -17.47929 -16.82213 -16.63181 -16.27398 -15.33500 -14.81529 -14.52830 -14.14516 -13.99723 -13.40466 -13.13366 -13.04993 -12.83821 -12.26040 -12.14420 -11.96024 -11.54176 -11.24510 -11.17276 -11.09741 -10.61299 -10.30923 -10.24235 -9.93848 -9.64640 -9.52873 -9.23951 -8.67417 -7.59934 -7.29702 -7.00107 -4.35161 0.93490 2.08421 2.24463 2.61732 2.95323 2.98274 3.02350 3.11226 3.37159 3.51278 3.78808 4.30856 4.40010 4.55769 4.72737 4.97560 5.00762 5.31563 5.55880 5.63573 5.86758 6.07773 6.30203 6.37063 6.65855 6.83266 6.92548 7.04615 7.20126 7.51524 7.54347 7.85380 7.96412 8.08583 8.17191 8.28494 8.50458 8.52830 8.75657 8.91011 9.87126 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040204 B = 0.003895 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.276563 B = 7187.676157 C = 7778.548253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.257 5.257 3 N -0.070 5.070 4 N -0.276 5.276 5 C -0.009 4.009 6 C -0.055 4.055 7 C 0.571 3.429 8 O -0.527 6.527 9 N -0.620 5.620 10 C -0.037 4.037 11 C -0.089 4.089 12 C -0.228 4.228 13 C 0.105 3.895 14 C -0.453 4.453 15 H 0.083 0.917 16 C 0.084 3.916 17 N -0.755 5.755 18 Si 0.904 3.096 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.189 4.189 23 C -0.080 4.080 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.197 0.803 28 H 0.398 0.602 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.286 0.714 32 H 0.125 0.875 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 8.590 2.203 9.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.053 5.053 3 N -0.051 5.051 4 N -0.139 5.139 5 C -0.169 4.169 6 C -0.189 4.189 7 C 0.355 3.645 8 O -0.404 6.404 9 N -0.262 5.262 10 C -0.129 4.129 11 C -0.109 4.109 12 C -0.248 4.248 13 C 0.102 3.898 14 C -0.479 4.479 15 H 0.101 0.899 16 C -0.140 4.140 17 N -0.377 5.377 18 Si 0.727 3.273 19 H -0.184 1.184 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.208 4.208 23 C -0.099 4.099 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.135 0.865 27 H 0.214 0.786 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.143 0.857 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.375 9.992 2.065 10.296 hybrid contribution 0.114 -1.711 0.309 1.743 sum 1.490 8.281 2.374 8.742 Atomic orbital electron populations 1.22541 0.71390 1.06478 1.05888 1.47606 1.09893 1.03486 1.44361 1.78227 0.96712 1.11691 1.18462 1.74841 1.09257 1.12639 1.17176 1.23872 0.96775 0.91904 1.04377 1.22228 0.91366 0.91289 1.14063 1.16675 0.86355 0.82156 0.79314 1.90764 1.16590 1.82686 1.50379 1.42481 1.10831 1.05155 1.67700 1.17079 0.97301 0.81070 1.17444 1.19989 0.96949 0.93845 1.00103 1.20384 0.98074 0.94588 1.11748 1.17651 0.90923 0.92927 0.88319 1.19612 0.93906 0.94421 1.40002 0.89913 1.26075 0.96073 0.99466 0.92356 1.69944 1.01392 1.37251 1.29119 0.86431 0.77894 0.81893 0.81088 1.18420 1.20160 1.18685 1.21147 1.01297 0.92131 1.06267 1.20723 0.94148 0.96322 0.98743 0.88706 0.88067 0.86468 0.78595 0.76806 0.89115 0.88647 0.90255 0.85738 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.82 59.85 0.65 1.45 16 2 N -0.26 -3.53 3.79 -64.12 -0.24 -3.77 16 3 N -0.07 -1.03 13.14 60.35 0.79 -0.24 16 4 N -0.28 -4.07 12.35 30.48 0.38 -3.70 16 5 C -0.01 -0.11 11.54 -17.34 -0.20 -0.31 16 6 C -0.05 -0.79 6.98 -82.33 -0.57 -1.36 16 7 C 0.57 9.69 7.67 -12.63 -0.10 9.59 16 8 O -0.53 -10.49 12.03 5.26 0.06 -10.43 16 9 N -0.62 -10.31 5.29 -10.78 -0.06 -10.37 16 10 C -0.04 -0.78 6.40 -83.61 -0.53 -1.32 16 11 C -0.09 -1.85 9.89 -39.78 -0.39 -2.24 16 12 C -0.23 -5.29 9.74 -39.26 -0.38 -5.67 16 13 C 0.10 2.69 5.70 -106.80 -0.61 2.08 16 14 C -0.45 -11.45 8.97 -37.86 -0.34 -11.79 16 15 H 0.08 2.00 8.03 -52.49 -0.42 1.58 16 16 C 0.08 1.99 4.95 -17.34 -0.09 1.90 16 17 N -0.76 -18.56 10.98 55.55 0.61 -17.95 16 18 Si 0.90 17.50 29.67 -169.99 -5.04 12.46 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 C -0.19 -4.85 8.85 -39.26 -0.35 -5.19 16 23 C -0.08 -1.89 8.68 -39.78 -0.35 -2.24 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.12 1.35 6.67 -51.93 -0.35 1.00 16 27 H 0.20 1.72 7.61 -52.49 -0.40 1.32 16 28 H 0.40 5.01 7.90 -40.82 -0.32 4.69 16 29 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 31 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 32 H 0.13 3.30 5.63 -52.49 -0.30 3.01 16 33 H 0.12 2.72 5.76 -52.49 -0.30 2.41 16 LS Contribution 291.06 15.07 4.39 4.39 Total: -1.00 -29.92 291.06 -5.29 -35.21 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -2.91 Total: 9.51 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -3.26 Total: -15.10 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 1.48 Total: -36.03 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.06 Total: -10.43 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.04 Total: 12.46 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.92 -5.29 -35.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344288942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.541 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds