Wall clock time and date at job start Mon Mar 30 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28715 * 126.03690 * 2 1 4 4 N 1.28513 * 110.64923 * 180.02562 * 3 2 1 5 5 C 1.33320 * 109.44397 * 359.71877 * 4 3 2 6 6 C 1.37046 * 106.36359 * 0.43573 * 5 4 3 7 7 C 1.47185 * 127.19001 * 179.84530 * 6 5 4 8 8 O 1.21624 * 119.99946 * 185.11180 * 7 6 5 9 9 N 1.34770 * 119.99736 * 5.11361 * 7 6 5 10 10 C 1.39107 * 119.99844 * 187.69398 * 9 7 6 11 11 C 1.39513 * 119.83963 * 149.08892 * 10 9 7 12 12 C 1.36364 * 120.16813 * 180.25251 * 11 10 9 13 13 C 1.40881 * 119.82531 * 359.50378 * 12 11 10 14 14 C 1.41134 * 120.15601 * 180.24743 * 13 12 11 15 15 H 1.08002 * 119.99782 * 7.79765 * 14 13 12 16 16 C 1.39905 * 120.00177 * 187.79309 * 14 13 12 17 17 N 1.30868 * 119.99669 * 34.08240 * 16 14 13 18 18 Si 1.86799 * 120.00525 * 214.08939 * 16 14 13 19 19 H 1.48497 * 109.47211 * 59.99306 * 18 16 14 20 20 H 1.48500 * 109.47584 * 180.02562 * 18 16 14 21 21 H 1.48513 * 109.46612 * 299.99805 * 18 16 14 22 22 C 1.40871 * 119.68153 * 0.51628 * 13 12 11 23 23 C 1.36355 * 119.83378 * 359.73368 * 22 13 12 24 24 H 1.09000 * 109.47328 * 264.27591 * 1 2 3 25 25 H 1.08997 * 109.46893 * 24.28155 * 1 2 3 26 26 H 1.09003 * 109.46944 * 144.28330 * 1 2 3 27 27 H 1.07995 * 126.81485 * 180.29537 * 5 4 3 28 28 H 0.97001 * 120.00254 * 7.68944 * 9 7 6 29 29 H 1.08002 * 119.91405 * 359.97438 * 11 10 9 30 30 H 1.08002 * 120.08257 * 179.72641 * 12 11 10 31 31 H 0.97008 * 120.00275 * 179.97438 * 17 16 14 32 32 H 1.08000 * 120.08666 * 179.71310 * 22 13 12 33 33 H 1.07998 * 119.92378 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4613 0.6998 -0.0005 5 6 3.5556 -0.6300 0.0052 6 6 2.2713 -1.1082 -0.0005 7 6 1.8466 -2.5175 -0.0006 8 8 0.6672 -2.7972 -0.0999 9 7 2.7648 -3.4979 0.1094 10 6 2.3859 -4.8267 -0.0508 11 6 3.2930 -5.7490 -0.5733 12 6 2.9270 -7.0523 -0.7380 13 6 1.6326 -7.4685 -0.3692 14 6 1.2482 -8.8167 -0.5318 15 1 1.9808 -9.5562 -0.8195 16 6 -0.0820 -9.1953 -0.3201 17 7 -1.0529 -8.3730 -0.6263 18 14 -0.4721 -10.8743 0.3997 19 1 0.1532 -10.9953 1.7411 20 1 -1.9437 -11.0304 0.5230 21 1 0.0643 -11.9326 -0.4937 22 6 0.7220 -6.5314 0.1572 23 6 1.1005 -5.2305 0.3114 24 1 -0.3634 -0.1025 1.0225 25 1 -0.3633 0.9367 -0.4226 26 1 -0.3633 -0.8344 -0.5999 27 1 4.4638 -1.2144 0.0108 28 1 3.6898 -3.2769 0.3002 29 1 4.2861 -5.4291 -0.8522 30 1 3.6288 -7.7642 -1.1467 31 1 -1.9752 -8.6356 -0.4799 32 1 -0.2735 -6.8424 0.4378 33 1 0.4034 -4.5108 0.7145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344288942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:17 Heat of formation + Delta-G solvation = 71.512396 kcal Electronic energy + Delta-G solvation = -19656.479432 eV Core-core repulsion = 16490.763376 eV Total energy + Delta-G solvation = -3165.716056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.39148 -41.14330 -38.99310 -36.47513 -35.63144 -34.88708 -32.73534 -31.32411 -30.75805 -29.05510 -27.12120 -25.01000 -23.65973 -23.22723 -22.37228 -21.29882 -19.41556 -19.20339 -17.92900 -17.83774 -17.76030 -17.02564 -16.08907 -16.01014 -15.67424 -15.28254 -14.81986 -14.52605 -14.29115 -14.02097 -13.83544 -13.81713 -13.28256 -13.18696 -12.82044 -12.75323 -12.29750 -12.25520 -11.89244 -11.65590 -11.30575 -11.28669 -10.89939 -10.61751 -10.40753 -9.41865 -9.04956 -8.75271 -6.20499 -0.20903 0.87078 1.07828 1.19328 1.22096 1.37788 1.48487 1.57082 2.02391 2.15366 2.19308 2.65131 3.31426 3.43255 3.70211 3.77634 4.02915 4.18660 4.47918 4.50113 4.56206 4.63070 4.91510 5.00169 5.08981 5.19561 5.28413 5.30142 5.43689 5.70299 5.86154 6.09790 6.12141 6.32312 6.58997 6.68240 6.90777 6.99674 7.18125 7.24292 8.14567 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.040204 B = 0.003895 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.276563 B = 7187.676157 C = 7778.548253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.254 5.254 3 N -0.077 5.077 4 N -0.298 5.298 5 C 0.014 3.986 6 C -0.074 4.074 7 C 0.578 3.422 8 O -0.559 6.559 9 N -0.612 5.612 10 C -0.022 4.022 11 C -0.082 4.082 12 C -0.241 4.241 13 C 0.074 3.926 14 C -0.492 4.492 15 H 0.084 0.916 16 C 0.045 3.955 17 N -0.792 5.792 18 Si 0.978 3.022 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.253 1.253 22 C -0.218 4.218 23 C -0.093 4.093 24 H 0.108 0.892 25 H 0.129 0.871 26 H 0.103 0.897 27 H 0.237 0.763 28 H 0.421 0.579 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.294 0.706 32 H 0.105 0.895 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 9.303 2.410 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.051 5.051 3 N -0.057 5.057 4 N -0.160 5.160 5 C -0.146 4.146 6 C -0.209 4.209 7 C 0.364 3.636 8 O -0.439 6.439 9 N -0.256 5.256 10 C -0.115 4.115 11 C -0.102 4.102 12 C -0.260 4.260 13 C 0.071 3.929 14 C -0.518 4.518 15 H 0.102 0.898 16 C -0.175 4.175 17 N -0.414 5.414 18 Si 0.797 3.203 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.177 1.177 22 C -0.238 4.238 23 C -0.113 4.113 24 H 0.126 0.874 25 H 0.147 0.853 26 H 0.121 0.879 27 H 0.253 0.747 28 H 0.260 0.740 29 H 0.154 0.846 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.992 10.743 2.270 11.380 hybrid contribution -0.338 -1.708 0.225 1.756 sum 2.654 9.035 2.495 9.741 Atomic orbital electron populations 1.22776 0.69923 1.07440 1.06736 1.47901 1.10868 1.03107 1.43223 1.78211 0.97072 1.11914 1.18545 1.74858 1.09300 1.13608 1.18195 1.24525 0.97387 0.91334 1.01405 1.21896 0.92284 0.90073 1.16613 1.16911 0.85728 0.83137 0.77848 1.90763 1.18190 1.83441 1.51484 1.42263 1.12123 1.03356 1.67827 1.17103 0.96139 0.83097 1.15196 1.20353 0.98720 0.92674 0.98477 1.20660 0.97457 0.96146 1.11783 1.17994 0.92236 0.93377 0.89243 1.19870 0.94960 0.94704 1.42302 0.89807 1.26930 0.95388 1.03318 0.91892 1.69975 1.02011 1.39357 1.30101 0.85321 0.78016 0.76978 0.79941 1.18494 1.19131 1.17729 1.21086 1.01007 0.93317 1.08348 1.20801 0.95650 0.95529 0.99303 0.87404 0.85254 0.87866 0.74676 0.74039 0.84578 0.87395 0.89538 0.87743 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 10.82 127.77 1.38 2.75 16 2 N -0.25 -6.48 3.79 -356.78 -1.35 -7.84 16 3 N -0.08 -2.09 13.14 37.02 0.49 -1.61 16 4 N -0.30 -7.98 12.35 -57.48 -0.71 -8.69 16 5 C 0.01 0.32 11.54 84.19 0.97 1.29 16 6 C -0.07 -1.96 6.98 40.40 0.28 -1.68 16 7 C 0.58 18.68 7.67 86.59 0.66 19.34 16 8 O -0.56 -22.20 12.03 -4.11 -0.05 -22.25 16 9 N -0.61 -18.75 5.29 -306.28 -1.62 -20.37 16 10 C -0.02 -0.91 6.40 38.61 0.25 -0.66 16 11 C -0.08 -3.24 9.89 22.14 0.22 -3.02 16 12 C -0.24 -11.04 9.74 22.48 0.22 -10.82 16 13 C 0.07 3.92 5.70 -21.28 -0.12 3.80 16 14 C -0.49 -25.65 8.97 23.38 0.21 -25.44 16 15 H 0.08 4.16 8.03 -2.91 -0.02 4.14 16 16 C 0.04 2.19 4.95 85.24 0.42 2.61 16 17 N -0.79 -40.45 10.98 21.82 0.24 -40.21 16 18 Si 0.98 36.39 29.67 68.60 2.04 38.43 16 19 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 20 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 21 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 22 C -0.22 -11.64 8.85 22.47 0.20 -11.44 16 23 C -0.09 -4.50 8.68 22.14 0.19 -4.31 16 24 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.10 2.34 6.67 -2.39 -0.02 2.33 16 27 H 0.24 2.94 7.61 -2.91 -0.02 2.92 16 28 H 0.42 8.88 7.90 -92.71 -0.73 8.15 16 29 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.29 13.43 8.30 -92.70 -0.77 12.66 16 32 H 0.10 5.89 5.63 -2.91 -0.02 5.88 16 33 H 0.11 5.31 5.76 -2.91 -0.02 5.29 16 Total: -1.00 -66.93 291.06 4.35 -62.58 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.44 Total: 27.54 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 4.89 Total: -27.58 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -2.96 Total: -78.71 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.04 Total: 38.43 kcal Total: -66.93 4.35 -62.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344288942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.089 kcal (2) G-P(sol) polarization free energy of solvation -66.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds