Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28717 * 126.03241 * 2 1 4 4 N 1.28516 * 110.64592 * 179.97438 * 3 2 1 5 5 C 1.33316 * 109.44428 * 0.02562 * 4 3 2 6 6 C 1.37045 * 106.36731 * 359.77459 * 5 4 3 7 7 C 1.47173 * 127.19490 * 180.23890 * 6 5 4 8 8 O 1.21631 * 119.99776 * 7.22979 * 7 6 5 9 9 N 1.34777 * 120.00541 * 187.22610 * 7 6 5 10 10 C 1.38979 * 120.00311 * 182.56120 * 9 7 6 11 11 C 1.38693 * 120.29226 * 334.71000 * 10 9 7 12 12 C 1.38196 * 120.03231 * 180.02562 * 11 10 9 13 13 C 1.38880 * 120.62230 * 359.97438 * 12 11 10 14 14 C 1.36454 * 120.58678 * 0.02562 * 13 12 11 15 15 C 1.40743 * 119.94326 * 359.67781 * 14 13 12 16 16 C 1.41049 * 120.30522 * 180.32203 * 15 14 13 17 17 H 1.07999 * 120.00536 * 204.36000 * 16 15 14 18 18 C 1.39967 * 120.00077 * 24.35706 * 16 15 14 19 19 N 1.30849 * 119.99525 * 15.93062 * 18 16 15 20 20 Si 1.86792 * 120.00262 * 195.93356 * 18 16 15 21 21 H 1.48503 * 109.47274 * 89.99886 * 20 18 16 22 22 H 1.48508 * 109.47448 * 210.00027 * 20 18 16 23 23 H 1.48500 * 109.47343 * 329.99833 * 20 18 16 24 24 H 1.08991 * 109.46854 * 96.86515 * 1 2 3 25 25 H 1.09005 * 109.46719 * 216.85957 * 1 2 3 26 26 H 1.09001 * 109.47272 * 336.85990 * 1 2 3 27 27 H 1.07998 * 126.81387 * 180.02562 * 5 4 3 28 28 H 0.97010 * 119.99365 * 2.56827 * 9 7 6 29 29 H 1.07993 * 119.98272 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.68861 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.71170 * 179.97438 * 13 12 11 32 32 H 1.08004 * 120.03289 * 179.97438 * 14 13 12 33 33 H 0.97006 * 119.99745 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4613 0.6999 0.0005 5 6 3.5557 -0.6299 0.0004 6 6 2.2714 -1.1082 0.0048 7 6 1.8468 -2.5173 0.0113 8 8 2.6721 -3.4005 0.1458 9 7 0.5434 -2.8291 -0.1316 10 6 0.1358 -4.1565 -0.0722 11 6 1.0222 -5.1753 -0.3885 12 6 0.6110 -6.4933 -0.3281 13 6 -0.6870 -6.8129 0.0484 14 6 -1.5799 -5.8308 0.3648 15 6 -1.1853 -4.4806 0.3176 16 6 -2.1000 -3.4597 0.6497 17 1 -1.9624 -2.4627 0.2578 18 6 -3.1862 -3.7385 1.4873 19 7 -3.1937 -4.8312 2.2070 20 14 -4.6251 -2.5508 1.5774 21 1 -5.6371 -2.9207 0.5555 22 1 -5.2384 -2.6178 2.9283 23 1 -4.1439 -1.1697 1.3203 24 1 -0.3633 -0.1228 -1.0202 25 1 -0.3633 -0.8223 0.6165 26 1 -0.3634 0.9450 0.4039 27 1 4.4639 -1.2142 0.0011 28 1 -0.1102 -2.1270 -0.2761 29 1 2.0341 -4.9385 -0.6821 30 1 1.3057 -7.2822 -0.5759 31 1 -0.9928 -7.8478 0.0902 32 1 -2.5873 -6.0894 0.6560 33 1 -3.9467 -5.0247 2.7872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344338821.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = 98.251875 kcal Electronic energy + Delta-G solvation = -20369.476033 eV Core-core repulsion = 17204.919488 eV Total energy + Delta-G solvation = -3164.556545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.24429 -39.71481 -37.30479 -35.19499 -33.89202 -33.71762 -31.36776 -29.80650 -28.54803 -28.23931 -25.56536 -23.88204 -22.32648 -21.81417 -20.77218 -19.93835 -17.88826 -17.41859 -16.85449 -16.78571 -16.06319 -15.35183 -14.71589 -14.50562 -14.35190 -14.04735 -13.49650 -13.25060 -13.01361 -12.68758 -12.50896 -11.99730 -11.94758 -11.56785 -11.33479 -11.23076 -11.04501 -10.68574 -10.33947 -10.22049 -9.91504 -9.63695 -9.41644 -9.40052 -9.04142 -7.57875 -7.14790 -6.92889 -4.56915 1.00242 2.12263 2.33673 2.57659 2.79950 2.88439 2.91511 3.07130 3.40309 3.55929 3.69843 4.22324 4.45038 4.54167 4.80231 4.94186 5.10194 5.26719 5.47983 5.48676 6.07176 6.22888 6.31470 6.37647 6.47555 6.64909 6.82081 6.97813 7.08882 7.41078 7.54028 7.75715 7.85563 7.96765 8.15203 8.34409 8.36798 8.51778 8.59954 8.77037 9.95628 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.007135 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.153528 B = 3923.241495 C = 5483.658698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.275 5.275 3 N -0.066 5.066 4 N -0.278 5.278 5 C 0.021 3.979 6 C -0.059 4.059 7 C 0.572 3.428 8 O -0.514 6.514 9 N -0.628 5.628 10 C 0.002 3.998 11 C -0.094 4.094 12 C -0.225 4.225 13 C -0.109 4.109 14 C -0.153 4.153 15 C 0.105 3.895 16 C -0.470 4.470 17 H 0.070 0.930 18 C 0.078 3.922 19 N -0.785 5.785 20 Si 0.908 3.092 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.263 1.263 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.202 0.798 28 H 0.399 0.601 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 6.044 -3.064 6.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.074 5.074 3 N -0.047 5.047 4 N -0.142 5.142 5 C -0.139 4.139 6 C -0.192 4.192 7 C 0.357 3.643 8 O -0.390 6.390 9 N -0.273 5.273 10 C -0.091 4.091 11 C -0.113 4.113 12 C -0.245 4.245 13 C -0.128 4.128 14 C -0.173 4.173 15 C 0.101 3.899 16 C -0.499 4.499 17 H 0.088 0.912 18 C -0.141 4.141 19 N -0.410 5.410 20 Si 0.732 3.268 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.187 1.187 24 H 0.121 0.879 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.219 0.781 28 H 0.238 0.762 29 H 0.143 0.857 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.143 0.857 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.041 6.846 -2.771 7.459 hybrid contribution -1.302 -0.346 0.188 1.360 sum -0.260 6.500 -2.583 7.000 Atomic orbital electron populations 1.22748 0.72192 1.07554 1.05934 1.47778 1.09455 1.04330 1.45839 1.78173 0.96772 1.11786 1.17928 1.74901 1.09084 1.12620 1.17566 1.23783 0.96934 0.91052 1.02162 1.22574 0.92217 0.89726 1.14692 1.16745 0.83431 0.84904 0.79268 1.90757 1.52089 1.46050 1.50083 1.43151 1.07000 1.09122 1.67987 1.17688 0.94910 0.81268 1.15235 1.20998 0.99072 0.91931 0.99345 1.20370 0.96624 0.94983 1.12506 1.20533 0.94167 0.97716 1.00347 1.20956 0.99824 0.91726 1.04775 1.17354 0.89150 0.93684 0.89684 1.19185 1.07691 0.96518 1.26516 0.91244 1.25842 0.98897 0.95942 0.93387 1.69806 1.29778 1.23810 1.17576 0.86321 0.81045 0.80846 0.78612 1.19055 1.20106 1.18654 0.87908 0.86944 0.86598 0.78145 0.76225 0.85717 0.88958 0.89216 0.85707 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 9.81 59.85 0.59 1.18 16 2 N -0.28 -3.92 3.79 -64.12 -0.24 -4.16 16 3 N -0.07 -1.02 13.14 60.35 0.79 -0.22 16 4 N -0.28 -4.48 12.35 30.48 0.38 -4.10 16 5 C 0.02 0.31 11.88 -17.34 -0.21 0.11 16 6 C -0.06 -0.95 6.98 -82.34 -0.57 -1.52 16 7 C 0.57 10.74 7.67 -12.63 -0.10 10.65 16 8 O -0.51 -10.97 13.86 5.25 0.07 -10.90 16 9 N -0.63 -12.00 4.88 -10.52 -0.05 -12.05 16 10 C 0.00 0.05 6.48 -83.21 -0.54 -0.49 16 11 C -0.09 -2.14 8.77 -39.43 -0.35 -2.49 16 12 C -0.22 -4.99 10.04 -39.36 -0.39 -5.38 16 13 C -0.11 -2.44 9.97 -39.99 -0.40 -2.84 16 14 C -0.15 -3.69 8.64 -39.28 -0.34 -4.03 16 15 C 0.10 2.52 5.60 -106.64 -0.60 1.92 16 16 C -0.47 -10.63 8.67 -37.87 -0.33 -10.96 16 17 H 0.07 1.38 6.36 -52.49 -0.33 1.05 16 18 C 0.08 1.74 5.18 -17.32 -0.09 1.65 16 19 N -0.79 -18.47 10.83 55.55 0.60 -17.87 16 20 Si 0.91 16.28 29.59 -169.99 -5.03 11.25 16 21 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 22 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 24 H 0.10 0.86 8.09 -51.93 -0.42 0.44 16 25 H 0.11 1.31 5.94 -51.93 -0.31 1.00 16 26 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.20 2.56 8.06 -52.49 -0.42 2.13 16 28 H 0.40 6.51 3.34 -40.82 -0.14 6.37 16 29 H 0.13 2.82 5.54 -52.49 -0.29 2.53 16 30 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.13 3.08 6.07 -52.48 -0.32 2.76 16 33 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 LS Contribution 285.38 15.07 4.30 4.30 Total: -1.00 -28.52 285.38 -5.14 -33.66 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -2.63 Total: 12.29 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -3.32 Total: -12.19 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 1.48 Total: -38.41 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.52 -5.14 -33.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344338821.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.908 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds