Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28717 * 126.03241 * 2 1 4 4 N 1.28516 * 110.64592 * 179.97438 * 3 2 1 5 5 C 1.33316 * 109.44428 * 0.02562 * 4 3 2 6 6 C 1.37045 * 106.36731 * 359.77459 * 5 4 3 7 7 C 1.47173 * 127.19490 * 180.23890 * 6 5 4 8 8 O 1.21631 * 119.99776 * 7.22979 * 7 6 5 9 9 N 1.34777 * 120.00541 * 187.22610 * 7 6 5 10 10 C 1.38979 * 120.00311 * 182.56120 * 9 7 6 11 11 C 1.38693 * 120.29226 * 334.71000 * 10 9 7 12 12 C 1.38196 * 120.03231 * 180.02562 * 11 10 9 13 13 C 1.38880 * 120.62230 * 359.97438 * 12 11 10 14 14 C 1.36454 * 120.58678 * 0.02562 * 13 12 11 15 15 C 1.40743 * 119.94326 * 359.67781 * 14 13 12 16 16 C 1.41049 * 120.30522 * 180.32203 * 15 14 13 17 17 H 1.07999 * 120.00536 * 204.36000 * 16 15 14 18 18 C 1.39967 * 120.00077 * 24.35706 * 16 15 14 19 19 N 1.30849 * 119.99525 * 15.93062 * 18 16 15 20 20 Si 1.86792 * 120.00262 * 195.93356 * 18 16 15 21 21 H 1.48503 * 109.47274 * 89.99886 * 20 18 16 22 22 H 1.48508 * 109.47448 * 210.00027 * 20 18 16 23 23 H 1.48500 * 109.47343 * 329.99833 * 20 18 16 24 24 H 1.08991 * 109.46854 * 96.86515 * 1 2 3 25 25 H 1.09005 * 109.46719 * 216.85957 * 1 2 3 26 26 H 1.09001 * 109.47272 * 336.85990 * 1 2 3 27 27 H 1.07998 * 126.81387 * 180.02562 * 5 4 3 28 28 H 0.97010 * 119.99365 * 2.56827 * 9 7 6 29 29 H 1.07993 * 119.98272 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.68861 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.71170 * 179.97438 * 13 12 11 32 32 H 1.08004 * 120.03289 * 179.97438 * 14 13 12 33 33 H 0.97006 * 119.99745 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4613 0.6999 0.0005 5 6 3.5557 -0.6299 0.0004 6 6 2.2714 -1.1082 0.0048 7 6 1.8468 -2.5173 0.0113 8 8 2.6721 -3.4005 0.1458 9 7 0.5434 -2.8291 -0.1316 10 6 0.1358 -4.1565 -0.0722 11 6 1.0222 -5.1753 -0.3885 12 6 0.6110 -6.4933 -0.3281 13 6 -0.6870 -6.8129 0.0484 14 6 -1.5799 -5.8308 0.3648 15 6 -1.1853 -4.4806 0.3176 16 6 -2.1000 -3.4597 0.6497 17 1 -1.9624 -2.4627 0.2578 18 6 -3.1862 -3.7385 1.4873 19 7 -3.1937 -4.8312 2.2070 20 14 -4.6251 -2.5508 1.5774 21 1 -5.6371 -2.9207 0.5555 22 1 -5.2384 -2.6178 2.9283 23 1 -4.1439 -1.1697 1.3203 24 1 -0.3633 -0.1228 -1.0202 25 1 -0.3633 -0.8223 0.6165 26 1 -0.3634 0.9450 0.4039 27 1 4.4639 -1.2142 0.0011 28 1 -0.1102 -2.1270 -0.2761 29 1 2.0341 -4.9385 -0.6821 30 1 1.3057 -7.2822 -0.5759 31 1 -0.9928 -7.8478 0.0902 32 1 -2.5873 -6.0894 0.6560 33 1 -3.9467 -5.0247 2.7872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344338821.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = 80.634447 kcal Electronic energy + Delta-G solvation = -20370.239982 eV Core-core repulsion = 17204.919488 eV Total energy + Delta-G solvation = -3165.320494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.44385 -41.28614 -38.98262 -36.46829 -35.57448 -35.17112 -32.66152 -31.54497 -30.20673 -29.24156 -27.25932 -25.29987 -23.50016 -23.43845 -22.36079 -21.46973 -19.37721 -18.96478 -18.31404 -17.94841 -17.50083 -16.94403 -16.20739 -16.02210 -15.81599 -15.33743 -14.85760 -14.51211 -14.39921 -14.20930 -13.85022 -13.60218 -13.26628 -13.16634 -12.82272 -12.80937 -12.28081 -12.15245 -12.00040 -11.57501 -11.32975 -11.26394 -11.07317 -10.73474 -10.61822 -9.36172 -8.85908 -8.60394 -6.31165 -0.26627 0.85734 1.04652 1.05448 1.23049 1.43722 1.55531 1.56732 1.96743 2.07250 2.19888 2.76859 3.06356 3.47886 3.68663 3.76294 3.93262 4.05940 4.35582 4.48778 4.54338 4.62408 4.76439 4.91523 4.99270 5.15334 5.20705 5.28094 5.37647 5.71143 5.81165 6.05098 6.15610 6.20658 6.51165 6.63454 6.87930 6.90919 7.09830 7.16481 8.32012 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.007135 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.153528 B = 3923.241495 C = 5483.658698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.261 5.261 3 N -0.064 5.064 4 N -0.296 5.296 5 C 0.030 3.970 6 C -0.076 4.076 7 C 0.578 3.422 8 O -0.543 6.543 9 N -0.624 5.624 10 C -0.003 4.003 11 C -0.109 4.109 12 C -0.233 4.233 13 C -0.114 4.114 14 C -0.178 4.178 15 C 0.079 3.921 16 C -0.486 4.486 17 H 0.093 0.907 18 C 0.037 3.963 19 N -0.822 5.822 20 Si 0.978 3.022 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.239 1.239 24 H 0.128 0.872 25 H 0.102 0.898 26 H 0.146 0.854 27 H 0.220 0.780 28 H 0.411 0.589 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 7.882 -3.355 8.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.061 5.061 3 N -0.046 5.046 4 N -0.159 5.159 5 C -0.131 4.131 6 C -0.209 4.209 7 C 0.364 3.636 8 O -0.421 6.421 9 N -0.270 5.270 10 C -0.097 4.097 11 C -0.129 4.129 12 C -0.252 4.252 13 C -0.133 4.133 14 C -0.198 4.198 15 C 0.075 3.925 16 C -0.515 4.515 17 H 0.111 0.889 18 C -0.179 4.179 19 N -0.447 5.447 20 Si 0.798 3.202 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.161 1.161 24 H 0.146 0.854 25 H 0.120 0.880 26 H 0.164 0.836 27 H 0.237 0.763 28 H 0.253 0.747 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.418 8.718 -3.075 9.254 hybrid contribution -1.087 -0.916 0.289 1.450 sum -0.668 7.802 -2.786 8.311 Atomic orbital electron populations 1.23155 0.70084 1.08799 1.07627 1.48034 1.10586 1.03346 1.44168 1.78129 0.96894 1.11932 1.17599 1.74916 1.09465 1.12902 1.18593 1.24164 0.97450 0.90924 1.00534 1.22173 0.92906 0.88836 1.16997 1.16958 0.82840 0.85745 0.78051 1.90731 1.52754 1.47348 1.51247 1.43082 1.07602 1.08241 1.68060 1.17789 0.94565 0.82811 1.14563 1.21187 0.99243 0.92549 0.99880 1.20648 0.96925 0.95489 1.12169 1.20760 0.94143 0.98538 0.99835 1.21009 0.99750 0.92665 1.06381 1.17704 0.90150 0.94200 0.90432 1.19608 1.07959 0.97354 1.26612 0.88885 1.26760 1.01167 0.97471 0.92498 1.69890 1.30776 1.25744 1.18320 0.85246 0.77182 0.79637 0.78102 1.19102 1.20497 1.16143 0.85374 0.87959 0.83621 0.76296 0.74740 0.85694 0.86828 0.87187 0.86986 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.81 127.77 1.25 2.02 16 2 N -0.26 -6.83 3.79 -356.78 -1.35 -8.19 16 3 N -0.06 -1.85 13.14 37.02 0.49 -1.36 16 4 N -0.30 -9.00 12.35 -57.48 -0.71 -9.71 16 5 C 0.03 0.86 11.88 84.19 1.00 1.86 16 6 C -0.08 -2.33 6.98 40.40 0.28 -2.04 16 7 C 0.58 21.28 7.67 86.59 0.66 21.95 16 8 O -0.54 -23.09 13.86 -4.13 -0.06 -23.15 16 9 N -0.62 -23.35 4.88 -305.45 -1.49 -24.84 16 10 C 0.00 -0.15 6.48 38.92 0.25 0.11 16 11 C -0.11 -4.99 8.77 22.37 0.20 -4.79 16 12 C -0.23 -10.29 10.04 22.41 0.22 -10.06 16 13 C -0.11 -5.15 9.97 22.01 0.22 -4.94 16 14 C -0.18 -8.76 8.64 22.47 0.19 -8.57 16 15 C 0.08 3.82 5.60 -21.17 -0.12 3.70 16 16 C -0.49 -21.69 8.67 23.38 0.20 -21.49 16 17 H 0.09 3.52 6.36 -2.91 -0.02 3.51 16 18 C 0.04 1.61 5.18 85.26 0.44 2.05 16 19 N -0.82 -39.05 10.83 21.83 0.24 -38.81 16 20 Si 0.98 32.03 29.59 68.60 2.03 34.06 16 21 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 22 H -0.28 -9.27 7.11 99.48 0.71 -8.56 16 23 H -0.24 -6.85 7.11 99.48 0.71 -6.14 16 24 H 0.13 1.69 8.09 -2.39 -0.02 1.67 16 25 H 0.10 2.12 5.94 -2.38 -0.01 2.11 16 26 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.22 5.24 8.06 -2.91 -0.02 5.22 16 28 H 0.41 12.79 3.34 -92.70 -0.31 12.48 16 29 H 0.13 5.69 5.54 -2.91 -0.02 5.67 16 30 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 32 H 0.11 5.71 6.07 -2.91 -0.02 5.69 16 33 H 0.29 12.49 8.30 -92.70 -0.77 11.73 16 Total: -1.00 -61.18 285.38 4.82 -56.36 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.87 Total: 35.85 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 4.81 Total: -20.21 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -2.83 Total: -82.90 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.15 kcal Atomic # 14 Polarization: 32.03 SS G_CDS: 2.03 Total: 34.06 kcal Total: -61.18 4.82 -56.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344338821.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.993 kcal (2) G-P(sol) polarization free energy of solvation -61.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds