Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34825 * 126.58610 * 2 1 4 4 C 1.36631 * 106.83002 * 180.16941 * 3 2 1 5 5 C 1.47483 * 125.77206 * 179.83808 * 4 3 2 6 6 O 1.21603 * 120.00055 * 359.71863 * 5 4 3 7 7 N 1.34777 * 119.99775 * 179.71817 * 5 4 3 8 8 C 1.39026 * 119.99825 * 185.75926 * 7 5 4 9 9 C 1.38678 * 120.28806 * 24.81979 * 8 7 5 10 10 C 1.38209 * 120.02969 * 180.27996 * 9 8 7 11 11 C 1.38872 * 120.62008 * 359.73126 * 10 9 8 12 12 C 1.36455 * 120.58597 * 0.02562 * 11 10 9 13 13 C 1.40743 * 119.94464 * 359.97438 * 12 11 10 14 14 C 1.41052 * 120.30552 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00558 * 185.66113 * 14 13 12 16 16 C 1.39967 * 119.99978 * 5.66834 * 14 13 12 17 17 N 1.30854 * 119.99744 * 34.84923 * 16 14 13 18 18 Si 1.86794 * 119.99961 * 214.85798 * 16 14 13 19 19 H 1.48504 * 109.47225 * 264.99558 * 18 16 14 20 20 H 1.48496 * 109.47276 * 24.99465 * 18 16 14 21 21 H 1.48501 * 109.47427 * 144.99625 * 18 16 14 22 22 N 1.34407 * 108.45316 * 359.57758 * 4 3 2 23 23 N 1.28758 * 109.52224 * 0.26413 * 22 4 3 24 24 H 1.08998 * 109.47162 * 270.31058 * 1 2 3 25 25 H 1.09002 * 109.47709 * 30.31557 * 1 2 3 26 26 H 1.09005 * 109.47001 * 150.31352 * 1 2 3 27 27 H 1.07997 * 126.58671 * 0.02562 * 3 2 1 28 28 H 0.97001 * 120.00291 * 5.76760 * 7 5 4 29 29 H 1.07999 * 119.98047 * 359.97438 * 9 8 7 30 30 H 1.07998 * 119.68366 * 179.76445 * 10 9 8 31 31 H 1.08000 * 119.71073 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.02933 * 180.02562 * 12 11 10 33 33 H 0.97007 * 119.99647 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2686 1.0826 0.0000 4 6 3.5545 0.6208 -0.0039 5 6 4.7703 1.4555 -0.0087 6 8 4.6755 2.6678 -0.0146 7 7 5.9865 0.8747 -0.0065 8 6 7.1301 1.6567 0.1099 9 6 7.0676 2.9008 0.7192 10 6 8.2066 3.6763 0.8268 11 6 9.4221 3.2199 0.3341 12 6 9.5134 1.9976 -0.2656 13 6 8.3687 1.1880 -0.3881 14 6 8.4543 -0.0766 -1.0072 15 1 7.5587 -0.6545 -1.1810 16 6 9.7000 -0.5825 -1.3962 17 7 10.7627 -0.3297 -0.6757 18 14 9.8455 -1.6181 -2.9439 19 1 9.7699 -3.0573 -2.5855 20 1 8.7363 -1.2802 -3.8717 21 1 11.1458 -1.3404 -3.6051 22 7 3.5239 -0.7229 0.0032 23 7 2.3009 -1.1255 0.0057 24 1 -0.3633 0.0056 1.0276 25 1 -0.3634 0.8871 -0.5187 26 1 -0.3633 -0.8928 -0.5090 27 1 1.9560 2.1163 0.0004 28 1 6.0639 -0.0890 -0.0861 29 1 6.1274 3.2660 1.1054 30 1 8.1508 4.6460 1.2990 31 1 10.3031 3.8378 0.4264 32 1 10.4634 1.6514 -0.6453 33 1 11.6261 -0.6801 -0.9455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344381213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = 68.390916 kcal Electronic energy + Delta-G solvation = -19769.331416 eV Core-core repulsion = 16603.480002 eV Total energy + Delta-G solvation = -3165.851413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.21640 -40.98862 -38.86082 -35.76767 -35.68613 -35.27236 -32.16312 -31.57456 -30.20422 -28.60029 -27.15721 -25.00593 -23.35541 -23.11176 -22.30881 -21.02618 -19.39321 -19.07267 -17.97090 -17.25737 -17.13677 -16.85050 -16.15487 -15.79043 -15.63766 -15.51490 -14.76882 -14.44598 -14.23928 -14.07602 -13.92056 -13.56891 -13.25093 -13.08655 -12.98987 -12.64921 -12.25438 -12.14587 -11.91702 -11.62865 -11.31589 -11.15510 -10.84297 -10.60989 -10.34955 -9.47955 -8.93625 -8.60646 -6.22022 0.13807 0.49101 0.99902 1.18456 1.22196 1.38005 1.47741 1.60826 2.17138 2.31229 2.35679 2.62837 3.21720 3.53364 3.76786 3.90729 3.98044 4.39980 4.47580 4.57823 4.64535 4.69593 4.78973 4.84772 5.03608 5.24696 5.32750 5.47583 5.48711 5.72230 5.88742 6.13793 6.22818 6.27991 6.60393 6.65870 6.85667 6.97498 7.01284 7.32304 8.13534 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.005512 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.292196 B = 5078.970595 C = 6411.953879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.350 5.350 3 C 0.114 3.886 4 C -0.122 4.122 5 C 0.583 3.417 6 O -0.561 6.561 7 N -0.622 5.622 8 C -0.016 4.016 9 C -0.095 4.095 10 C -0.250 4.250 11 C -0.106 4.106 12 C -0.211 4.211 13 C 0.074 3.926 14 C -0.488 4.488 15 H 0.080 0.920 16 C 0.053 3.947 17 N -0.783 5.783 18 Si 0.972 3.028 19 H -0.257 1.257 20 H -0.264 1.264 21 H -0.261 1.261 22 N -0.233 5.233 23 N -0.091 5.091 24 H 0.109 0.891 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.242 0.758 28 H 0.410 0.590 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.676 -0.571 -0.771 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.135 5.135 3 C -0.044 4.044 4 C -0.262 4.262 5 C 0.370 3.630 6 O -0.441 6.441 7 N -0.262 5.262 8 C -0.110 4.110 9 C -0.115 4.115 10 C -0.270 4.270 11 C -0.125 4.125 12 C -0.231 4.231 13 C 0.070 3.930 14 C -0.515 4.515 15 H 0.098 0.902 16 C -0.169 4.169 17 N -0.405 5.405 18 Si 0.792 3.208 19 H -0.181 1.181 20 H -0.188 1.188 21 H -0.185 1.185 22 N -0.107 5.107 23 N -0.072 5.072 24 H 0.128 0.872 25 H 0.149 0.851 26 H 0.128 0.872 27 H 0.258 0.742 28 H 0.247 0.753 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.541 -1.364 -0.691 16.612 hybrid contribution 0.351 0.136 -0.473 0.604 sum -16.190 -1.228 -1.164 16.278 Atomic orbital electron populations 1.22760 0.68991 1.07910 1.06712 1.50746 1.10775 1.04351 1.47581 1.23800 0.88578 0.96419 0.95626 1.21395 0.95056 0.90241 1.19554 1.17144 0.82127 0.86530 0.77167 1.90683 1.86750 1.13867 1.52840 1.42722 1.03994 1.10867 1.68643 1.17737 0.86728 0.95775 1.10786 1.20904 0.98468 0.93814 0.98289 1.20524 0.92900 1.01306 1.12273 1.20694 0.96980 0.95883 0.98947 1.21150 0.99062 0.95516 1.07390 1.17668 0.90584 0.94245 0.90475 1.19576 0.94420 1.02086 1.35418 0.90225 1.26767 0.94397 0.96254 0.99434 1.69931 1.01872 1.34419 1.34304 0.85352 0.79119 0.78535 0.77798 1.18124 1.18848 1.18485 1.74643 1.14018 1.11077 1.10926 1.81858 0.93416 1.08099 1.23779 0.87239 0.85052 0.87184 0.74175 0.75300 0.86392 0.86840 0.87109 0.86324 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.51 127.77 1.47 1.91 16 2 N -0.35 -6.78 4.03 -368.55 -1.49 -8.27 16 3 C 0.11 2.57 11.31 83.86 0.95 3.52 16 4 C -0.12 -4.11 6.99 40.81 0.29 -3.83 16 5 C 0.58 24.39 7.61 86.68 0.66 25.05 16 6 O -0.56 -25.10 14.03 -4.04 -0.06 -25.16 16 7 N -0.62 -28.89 5.11 -305.16 -1.56 -30.45 16 8 C -0.02 -0.85 6.46 38.91 0.25 -0.59 16 9 C -0.09 -4.78 8.71 22.37 0.19 -4.58 16 10 C -0.25 -12.01 10.04 22.41 0.22 -11.79 16 11 C -0.11 -5.21 9.96 22.01 0.22 -4.99 16 12 C -0.21 -11.40 8.88 22.47 0.20 -11.21 16 13 C 0.07 4.09 5.72 -21.18 -0.12 3.97 16 14 C -0.49 -25.94 8.63 23.38 0.20 -25.73 16 15 H 0.08 4.09 6.65 -2.91 -0.02 4.07 16 16 C 0.05 2.57 4.96 85.26 0.42 3.00 16 17 N -0.78 -39.09 10.94 21.83 0.24 -38.85 16 18 Si 0.97 37.26 29.67 68.60 2.04 39.29 16 19 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 22 N -0.23 -8.18 12.05 -50.00 -0.60 -8.78 16 23 N -0.09 -2.65 13.78 37.02 0.51 -2.14 16 24 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.24 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.41 18.57 6.89 -92.71 -0.64 17.93 16 29 H 0.12 5.80 5.79 -2.91 -0.02 5.78 16 30 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 32 H 0.12 6.49 5.56 -2.91 -0.02 6.47 16 33 H 0.30 13.08 8.30 -92.70 -0.77 12.31 16 Total: -1.00 -71.15 293.51 4.57 -66.58 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.53 Total: 33.05 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.96 Total: -25.29 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.90 Total: -88.49 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.06 Total: -25.16 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.04 Total: 39.29 kcal Total: -71.15 4.57 -66.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344381213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.974 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds