Wall clock time and date at job start Mon Mar 30 2020 01:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36788 * 120.00053 * 2 1 4 4 H 1.08001 * 119.99909 * 205.38881 * 3 2 1 5 5 C 1.39096 * 120.00050 * 25.38192 * 3 2 1 6 6 N 1.31327 * 120.00515 * 219.25968 * 5 3 2 7 7 Si 1.86801 * 119.99925 * 39.26474 * 5 3 2 8 8 H 1.48504 * 109.47179 * 93.87967 * 7 5 3 9 9 H 1.48504 * 109.47079 * 213.87868 * 7 5 3 10 10 H 1.48497 * 109.47314 * 333.87919 * 7 5 3 11 11 C 1.34774 * 119.99886 * 179.97438 * 2 1 3 12 12 O 1.21571 * 119.99924 * 175.31458 * 11 2 1 13 13 C 1.48017 * 120.00043 * 355.59765 * 11 2 1 14 14 C 1.39240 * 119.69974 * 183.19755 * 13 11 2 15 15 C 1.39248 * 118.96377 * 179.76823 * 14 13 11 16 16 N 1.39944 * 120.81300 * 180.23772 * 15 14 13 17 17 C 1.35820 * 126.09773 * 184.97688 * 16 15 14 18 18 C 1.35291 * 107.61286 * 179.83808 * 17 16 15 19 19 C 1.39948 * 107.96870 * 0.42521 * 18 17 16 20 20 N 1.30823 * 108.36366 * 359.73430 * 19 18 17 21 21 C 1.39309 * 118.36439 * 0.49385 * 15 14 13 22 22 C 1.38335 * 119.29626 * 359.74983 * 21 15 14 23 23 N 1.31596 * 120.98474 * 359.97438 * 22 21 15 24 24 H 1.09003 * 109.46866 * 241.62598 * 1 2 3 25 25 H 1.09002 * 109.47145 * 1.62278 * 1 2 3 26 26 H 1.08999 * 109.47255 * 121.62488 * 1 2 3 27 27 H 0.96996 * 120.00390 * 179.97438 * 6 5 3 28 28 H 1.07995 * 120.51351 * 0.02562 * 14 13 11 29 29 H 1.07997 * 126.19407 * 359.97438 * 17 16 15 30 30 H 1.08002 * 126.01509 * 180.15233 * 18 17 16 31 31 H 1.07999 * 125.81624 * 179.73287 * 19 18 17 32 32 H 1.08003 * 120.35233 * 179.72144 * 21 15 14 33 33 H 1.08003 * 119.50866 * 179.97438 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1846 0.0000 4 1 3.1507 1.2298 -0.4010 5 6 1.5542 2.3311 0.5164 6 7 1.7320 3.4882 -0.0788 7 14 0.5025 2.2250 2.0566 8 1 1.3380 2.5217 3.2479 9 1 -0.6037 3.2119 1.9696 10 1 -0.0628 0.8571 2.1767 11 6 2.1388 -1.1672 0.0005 12 8 3.3515 -1.1690 -0.0855 13 6 1.4020 -2.4471 0.0995 14 6 2.1073 -3.6457 0.1668 15 6 1.3988 -4.8405 0.2645 16 7 2.0685 -6.0670 0.3395 17 6 1.4899 -7.2958 0.3418 18 6 2.4800 -8.2143 0.4228 19 6 3.6996 -7.5304 0.4814 20 7 3.4549 -6.2463 0.4317 21 6 0.0069 -4.7851 0.2803 22 6 -0.6225 -3.5556 0.2044 23 7 0.0737 -2.4423 0.1183 24 1 -0.3633 -0.4884 0.9042 25 1 -0.3633 1.0273 -0.0291 26 1 -0.3634 -0.5389 -0.8750 27 1 1.3169 4.2876 0.2811 28 1 3.1871 -3.6484 0.1478 29 1 0.4313 -7.5024 0.2865 30 1 2.3515 -9.2864 0.4435 31 1 4.6763 -7.9853 0.5552 32 1 -0.5746 -5.6925 0.3505 33 1 -1.7015 -3.5087 0.2159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346228939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:10 Heat of formation + Delta-G solvation = 99.250016 kcal Electronic energy + Delta-G solvation = -19934.454510 eV Core-core repulsion = 16769.941248 eV Total energy + Delta-G solvation = -3164.513262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.58664 -41.41855 -39.75308 -36.89727 -35.44571 -34.24718 -32.58473 -31.39875 -30.75294 -28.21448 -27.52619 -25.31295 -24.80415 -22.72778 -21.80373 -21.00916 -19.33902 -19.01657 -18.08352 -17.32718 -16.95861 -16.69772 -16.54910 -16.14264 -15.96654 -15.56997 -15.01227 -14.69211 -14.47433 -14.41785 -14.36380 -13.95988 -13.69384 -13.39888 -12.98503 -12.68078 -12.54197 -12.00847 -11.75058 -11.67987 -11.15864 -10.85227 -10.38559 -10.29716 -10.28286 -9.90946 -9.45766 -8.76460 -6.04702 -0.50566 -0.19374 1.10183 1.23763 1.24491 1.34350 1.45775 1.83022 1.88764 2.13154 2.47686 2.70115 2.98159 3.29719 3.39011 3.63893 3.87316 3.93823 4.08504 4.18336 4.45289 4.55536 4.60502 4.68240 4.75985 4.85333 4.93987 5.02861 5.03781 5.30359 5.46725 5.63055 5.95215 6.05563 6.35495 6.57841 6.72776 6.88124 7.18857 7.78131 8.38971 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.004565 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.651769 B = 6132.197881 C = 6576.288518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.429 5.429 3 C -0.372 4.372 4 H 0.052 0.948 5 C 0.041 3.959 6 N -0.856 5.856 7 Si 0.926 3.074 8 H -0.284 1.284 9 H -0.253 1.253 10 H -0.230 1.230 11 C 0.461 3.539 12 O -0.628 6.628 13 C 0.115 3.885 14 C -0.152 4.152 15 C 0.195 3.805 16 N -0.346 5.346 17 C 0.055 3.945 18 C -0.256 4.256 19 C 0.055 3.945 20 N -0.350 5.350 21 C -0.167 4.167 22 C 0.131 3.869 23 N -0.485 5.485 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.290 0.710 28 H 0.118 0.882 29 H 0.226 0.774 30 H 0.192 0.808 31 H 0.216 0.784 32 H 0.197 0.803 33 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 -23.720 3.019 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.144 5.144 3 C -0.499 4.499 4 H 0.070 0.930 5 C -0.168 4.168 6 N -0.489 5.489 7 Si 0.746 3.254 8 H -0.211 1.211 9 H -0.177 1.177 10 H -0.153 1.153 11 C 0.252 3.748 12 O -0.517 6.517 13 C -0.021 4.021 14 C -0.176 4.176 15 C 0.094 3.906 16 N -0.123 5.123 17 C -0.084 4.084 18 C -0.283 4.283 19 C -0.133 4.133 20 N -0.168 5.168 21 C -0.189 4.189 22 C -0.028 4.028 23 N -0.198 5.198 24 H 0.101 0.899 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.136 0.864 29 H 0.243 0.757 30 H 0.210 0.790 31 H 0.233 0.767 32 H 0.215 0.785 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.609 -21.404 2.861 24.517 hybrid contribution 0.956 -0.761 0.442 1.300 sum -10.653 -22.165 3.303 24.813 Atomic orbital electron populations 1.22302 0.78246 1.00596 1.03490 1.43710 1.07197 1.04150 1.59385 1.18730 1.01927 0.85073 1.44191 0.92991 1.26009 0.97846 0.93356 0.99616 1.70024 1.41242 1.01564 1.36078 0.86250 0.78734 0.81359 0.79070 1.21067 1.17725 1.15272 1.18271 0.86558 0.84014 0.85945 1.90588 1.15513 1.87157 1.58407 1.20777 0.90457 0.92341 0.98527 1.21488 1.01561 0.91245 1.03279 1.17847 0.92241 0.82501 0.98014 1.46080 1.04913 1.04409 1.56894 1.23688 1.02683 0.82185 0.99886 1.22139 0.90204 1.02304 1.13668 1.24831 1.02253 0.89755 0.96415 1.77613 0.91853 1.21441 1.25883 1.22442 0.89955 1.02994 1.03556 1.23696 1.02569 0.85336 0.91224 1.68195 1.05624 1.32759 1.13268 0.89947 0.92723 0.90223 0.89938 0.86356 0.75728 0.79049 0.76728 0.78550 0.76112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.04 6.88 127.77 0.88 4.92 16 2 N -0.43 -23.19 2.75 -662.04 -1.82 -25.01 16 3 C -0.37 -22.99 9.45 84.13 0.79 -22.19 16 4 H 0.05 3.73 7.62 -2.91 -0.02 3.71 16 5 C 0.04 2.31 4.74 84.97 0.40 2.72 16 6 N -0.86 -49.36 13.95 21.69 0.30 -49.06 16 7 Si 0.93 40.82 26.45 68.60 1.81 42.64 16 8 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 9 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 10 H -0.23 -9.36 5.18 99.48 0.51 -8.84 16 11 C 0.46 25.26 7.61 86.84 0.66 25.92 16 12 O -0.63 -40.02 16.03 -3.94 -0.06 -40.09 16 13 C 0.12 4.88 6.68 41.83 0.28 5.16 16 14 C -0.15 -6.01 9.26 22.75 0.21 -5.79 16 15 C 0.20 5.57 6.72 38.35 0.26 5.83 16 16 N -0.35 -9.05 3.81 -186.87 -0.71 -9.76 16 17 C 0.05 0.84 10.85 83.40 0.91 1.75 16 18 C -0.26 -3.62 10.80 22.00 0.24 -3.38 16 19 C 0.06 1.12 12.02 85.26 1.02 2.14 16 20 N -0.35 -10.65 11.98 -56.98 -0.68 -11.34 16 21 C -0.17 -3.00 9.54 22.55 0.22 -2.78 16 22 C 0.13 2.64 11.17 84.75 0.95 3.58 16 23 N -0.48 -15.89 5.96 -185.15 -1.10 -16.99 16 24 H 0.08 3.15 5.85 -2.39 -0.01 3.13 16 25 H 0.05 2.30 5.28 -2.39 -0.01 2.28 16 26 H 0.08 3.02 7.14 -2.39 -0.02 3.01 16 27 H 0.29 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.12 5.50 7.39 -2.91 -0.02 5.48 16 29 H 0.23 1.01 7.16 -2.91 -0.02 0.99 16 30 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.22 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.20 1.23 6.90 -2.91 -0.02 1.21 16 33 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -87.73 285.83 5.51 -82.22 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.96 Total: 9.51 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 6.81 Total: 17.87 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -4.01 Total: -112.15 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.06 Total: -40.09 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.81 Total: 42.64 kcal Total: -87.73 5.51 -82.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346228939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.472 kcal (2) G-P(sol) polarization free energy of solvation -87.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds