Wall clock time and date at job start Mon Mar 30 2020 01:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36781 * 119.99949 * 2 1 4 4 H 1.08007 * 119.99585 * 205.95896 * 3 2 1 5 5 C 1.39107 * 120.00362 * 25.95695 * 3 2 1 6 6 N 1.31320 * 119.99734 * 11.28343 * 5 3 2 7 7 Si 1.86799 * 120.00071 * 191.28679 * 5 3 2 8 8 H 1.48500 * 109.47237 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47036 * 119.99844 * 7 5 3 10 10 H 1.48500 * 109.46993 * 239.99505 * 7 5 3 11 11 C 1.34783 * 119.99980 * 179.97438 * 2 1 3 12 12 O 1.21567 * 119.99667 * 182.77414 * 11 2 1 13 13 C 1.47996 * 119.99599 * 2.78136 * 11 2 1 14 14 C 1.39339 * 119.69022 * 173.12832 * 13 11 2 15 15 C 1.38668 * 119.18577 * 179.97438 * 14 13 11 16 16 C 1.38453 * 118.56282 * 359.72288 * 15 14 13 17 17 C 1.39258 * 119.31183 * 0.53751 * 16 15 14 18 18 N 1.39816 * 119.61203 * 179.72872 * 17 16 15 19 19 C 1.35846 * 126.10554 * 179.74506 * 18 17 16 20 20 C 1.35275 * 107.61717 * 179.69480 * 19 18 17 21 21 C 1.39961 * 107.96579 * 0.42428 * 20 19 18 22 22 N 1.30814 * 108.37067 * 359.56982 * 21 20 19 23 23 N 1.31989 * 120.77656 * 359.45286 * 17 16 15 24 24 H 1.08999 * 109.47190 * 263.94811 * 1 2 3 25 25 H 1.09004 * 109.46891 * 23.94662 * 1 2 3 26 26 H 1.09001 * 109.46982 * 143.94391 * 1 2 3 27 27 H 0.96995 * 120.00110 * 179.97438 * 6 5 3 28 28 H 1.08002 * 120.41280 * 359.97438 * 14 13 11 29 29 H 1.07995 * 120.71995 * 180.02562 * 15 14 13 30 30 H 1.07991 * 120.34204 * 180.28327 * 16 15 14 31 31 H 1.08001 * 126.19283 * 359.95857 * 19 18 17 32 32 H 1.07997 * 126.02220 * 180.29198 * 20 19 18 33 33 H 1.08003 * 125.81419 * 179.82819 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1846 0.0000 4 1 3.1472 1.2317 -0.4095 5 6 1.5586 2.3285 0.5273 6 7 0.4472 2.2340 1.2203 7 14 2.3469 3.9991 0.2494 8 1 3.5832 3.8351 -0.5567 9 1 1.3964 4.8807 -0.4749 10 1 2.6880 4.6095 1.5595 11 6 2.1389 -1.1673 0.0005 12 8 3.3535 -1.1678 0.0515 13 6 1.4001 -2.4482 -0.0611 14 6 2.1018 -3.6433 -0.2051 15 6 1.3991 -4.8375 -0.2611 16 6 0.0184 -4.7982 -0.1655 17 6 -0.6208 -3.5686 -0.0283 18 7 -2.0151 -3.5212 0.0630 19 6 -2.7705 -2.4010 0.2038 20 6 -4.0672 -2.7841 0.2462 21 6 -4.1089 -4.1789 0.1380 22 7 -2.8828 -4.6206 0.0248 23 7 0.0746 -2.4479 0.0220 24 1 -0.3633 -0.1083 1.0219 25 1 -0.3633 0.9393 -0.4171 26 1 -0.3633 -0.8308 -0.6049 27 1 0.0358 3.0316 1.5883 28 1 3.1797 -3.6398 -0.2722 29 1 1.9178 -5.7782 -0.3719 30 1 -0.5571 -5.7113 -0.2012 31 1 -2.4027 -1.3874 0.2660 32 1 -4.9200 -2.1294 0.3479 33 1 -5.0017 -4.7867 0.1425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346970515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:12 Heat of formation + Delta-G solvation = 120.100291 kcal Electronic energy + Delta-G solvation = -20293.597033 eV Core-core repulsion = 17129.987906 eV Total energy + Delta-G solvation = -3163.609127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41619 -39.93084 -37.89436 -34.89254 -33.35344 -32.65444 -31.43479 -30.23609 -29.19245 -26.42514 -25.30300 -23.83481 -23.45085 -21.22593 -20.75831 -19.58164 -17.84200 -17.14564 -16.55720 -15.86121 -15.45254 -15.23751 -15.01483 -14.42480 -14.21123 -14.07014 -13.53151 -13.17179 -12.99244 -12.83993 -12.58977 -11.95677 -11.76702 -11.50153 -11.29915 -10.99325 -10.80785 -10.52503 -10.41522 -10.27702 -9.67326 -9.27195 -9.05645 -9.03358 -8.45260 -8.11766 -7.74439 -6.50451 -4.01253 0.82906 1.19759 2.19961 2.23942 2.81331 3.06974 3.16883 3.23717 3.58736 3.97163 4.35210 4.41169 4.54584 4.82245 4.98310 5.06352 5.17749 5.22400 5.37537 5.49319 5.65955 5.78781 5.85677 5.99469 6.18021 6.35439 6.55932 6.64150 6.78421 6.96509 7.20382 7.30403 7.39728 7.47276 7.96666 8.07567 8.35382 9.01475 9.23120 9.85720 10.49760 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.005914 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.083628 B = 4733.489291 C = 6021.068135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.399 5.399 3 C -0.301 4.301 4 H 0.104 0.896 5 C 0.034 3.966 6 N -0.858 5.858 7 Si 0.932 3.068 8 H -0.265 1.265 9 H -0.278 1.278 10 H -0.278 1.278 11 C 0.466 3.534 12 O -0.589 6.589 13 C 0.148 3.852 14 C -0.141 4.141 15 C -0.061 4.061 16 C -0.172 4.172 17 C 0.354 3.646 18 N -0.320 5.320 19 C 0.086 3.914 20 C -0.274 4.274 21 C 0.057 3.943 22 N -0.291 5.291 23 N -0.476 5.476 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.272 0.728 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.186 0.814 32 H 0.154 0.846 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 -9.643 -2.419 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.113 5.113 3 C -0.430 4.430 4 H 0.122 0.878 5 C -0.172 4.172 6 N -0.495 5.495 7 Si 0.758 3.242 8 H -0.189 1.189 9 H -0.203 1.203 10 H -0.204 1.204 11 C 0.254 3.746 12 O -0.476 6.476 13 C 0.009 3.991 14 C -0.163 4.163 15 C -0.087 4.087 16 C -0.195 4.195 17 C 0.126 3.874 18 N -0.097 5.097 19 C -0.057 4.057 20 C -0.303 4.303 21 C -0.131 4.131 22 N -0.110 5.110 23 N -0.194 5.194 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.203 0.797 32 H 0.172 0.828 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.311 -9.663 -2.334 12.340 hybrid contribution -0.170 0.857 0.104 0.880 sum -7.481 -8.805 -2.230 11.767 Atomic orbital electron populations 1.22156 0.80035 1.00561 1.01433 1.43605 1.06623 1.04451 1.56611 1.19894 1.01722 0.84237 1.37134 0.87812 1.25540 0.96398 1.00677 0.94631 1.69987 1.18616 1.30431 1.30449 0.85768 0.79382 0.80584 0.78483 1.18853 1.20338 1.20396 1.17454 0.86873 0.82171 0.88055 1.90622 1.12550 1.85733 1.58651 1.21568 0.86730 0.96090 0.94742 1.22086 1.02492 0.91513 1.00217 1.21416 0.92902 0.98671 0.95732 1.21565 0.95270 0.97450 1.05228 1.17927 0.80851 0.90811 0.97770 1.45776 1.03310 1.05314 1.55348 1.23140 0.91072 0.93739 0.97726 1.21622 0.96765 0.95416 1.16452 1.24068 0.95456 0.95103 0.98437 1.77369 1.00045 1.08568 1.25020 1.67755 1.08790 1.26527 1.16297 0.92931 0.91917 0.91277 0.91724 0.83254 0.83939 0.83992 0.79701 0.82820 0.79384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.35 7.21 59.84 0.43 2.78 16 2 N -0.40 -10.47 3.00 -123.23 -0.37 -10.84 16 3 C -0.30 -8.27 9.19 -15.02 -0.14 -8.41 16 4 H 0.10 2.94 7.50 -52.48 -0.39 2.54 16 5 C 0.03 0.88 5.06 -17.45 -0.09 0.79 16 6 N -0.86 -22.29 10.86 55.50 0.60 -21.69 16 7 Si 0.93 19.95 29.57 -169.99 -5.03 14.93 16 8 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 C 0.47 11.87 7.60 -12.26 -0.09 11.78 16 12 O -0.59 -16.45 16.08 5.31 0.09 -16.36 16 13 C 0.15 3.10 6.63 -83.03 -0.55 2.55 16 14 C -0.14 -2.45 9.63 -39.01 -0.38 -2.82 16 15 C -0.06 -0.85 10.16 -39.34 -0.40 -1.25 16 16 C -0.17 -2.58 9.70 -39.12 -0.38 -2.96 16 17 C 0.35 6.20 7.55 -154.52 -1.17 5.04 16 18 N -0.32 -5.25 3.81 -12.10 -0.05 -5.29 16 19 C 0.09 1.28 11.10 -16.83 -0.19 1.09 16 20 C -0.27 -3.35 10.80 -39.99 -0.43 -3.78 16 21 C 0.06 0.68 12.02 -17.34 -0.21 0.47 16 22 N -0.29 -4.32 11.83 30.64 0.36 -3.96 16 23 N -0.48 -9.37 5.50 -8.86 -0.05 -9.42 16 24 H 0.05 1.26 7.89 -51.93 -0.41 0.85 16 25 H 0.06 1.49 6.74 -51.93 -0.35 1.14 16 26 H 0.07 1.47 4.82 -52.95 -0.26 1.21 16 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.15 2.50 7.65 -52.49 -0.40 2.10 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.14 1.89 7.68 -52.49 -0.40 1.49 16 31 H 0.19 2.75 7.25 -52.49 -0.38 2.37 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.19 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -31.51 290.63 -6.64 -38.15 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.00 Total: 4.82 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.59 Total: 5.28 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.50 Total: -51.20 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.09 Total: -16.36 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.51 -6.64 -38.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346970515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.253 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds