Wall clock time and date at job start Mon Mar 30 2020 01:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36781 * 119.99949 * 2 1 4 4 H 1.08007 * 119.99585 * 205.95896 * 3 2 1 5 5 C 1.39107 * 120.00362 * 25.95695 * 3 2 1 6 6 N 1.31320 * 119.99734 * 11.28343 * 5 3 2 7 7 Si 1.86799 * 120.00071 * 191.28679 * 5 3 2 8 8 H 1.48500 * 109.47237 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47036 * 119.99844 * 7 5 3 10 10 H 1.48500 * 109.46993 * 239.99505 * 7 5 3 11 11 C 1.34783 * 119.99980 * 179.97438 * 2 1 3 12 12 O 1.21567 * 119.99667 * 182.77414 * 11 2 1 13 13 C 1.47996 * 119.99599 * 2.78136 * 11 2 1 14 14 C 1.39339 * 119.69022 * 173.12832 * 13 11 2 15 15 C 1.38668 * 119.18577 * 179.97438 * 14 13 11 16 16 C 1.38453 * 118.56282 * 359.72288 * 15 14 13 17 17 C 1.39258 * 119.31183 * 0.53751 * 16 15 14 18 18 N 1.39816 * 119.61203 * 179.72872 * 17 16 15 19 19 C 1.35846 * 126.10554 * 179.74506 * 18 17 16 20 20 C 1.35275 * 107.61717 * 179.69480 * 19 18 17 21 21 C 1.39961 * 107.96579 * 0.42428 * 20 19 18 22 22 N 1.30814 * 108.37067 * 359.56982 * 21 20 19 23 23 N 1.31989 * 120.77656 * 359.45286 * 17 16 15 24 24 H 1.08999 * 109.47190 * 263.94811 * 1 2 3 25 25 H 1.09004 * 109.46891 * 23.94662 * 1 2 3 26 26 H 1.09001 * 109.46982 * 143.94391 * 1 2 3 27 27 H 0.96995 * 120.00110 * 179.97438 * 6 5 3 28 28 H 1.08002 * 120.41280 * 359.97438 * 14 13 11 29 29 H 1.07995 * 120.71995 * 180.02562 * 15 14 13 30 30 H 1.07991 * 120.34204 * 180.28327 * 16 15 14 31 31 H 1.08001 * 126.19283 * 359.95857 * 19 18 17 32 32 H 1.07997 * 126.02220 * 180.29198 * 20 19 18 33 33 H 1.08003 * 125.81419 * 179.82819 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1846 0.0000 4 1 3.1472 1.2317 -0.4095 5 6 1.5586 2.3285 0.5273 6 7 0.4472 2.2340 1.2203 7 14 2.3469 3.9991 0.2494 8 1 3.5832 3.8351 -0.5567 9 1 1.3964 4.8807 -0.4749 10 1 2.6880 4.6095 1.5595 11 6 2.1389 -1.1673 0.0005 12 8 3.3535 -1.1678 0.0515 13 6 1.4001 -2.4482 -0.0611 14 6 2.1018 -3.6433 -0.2051 15 6 1.3991 -4.8375 -0.2611 16 6 0.0184 -4.7982 -0.1655 17 6 -0.6208 -3.5686 -0.0283 18 7 -2.0151 -3.5212 0.0630 19 6 -2.7705 -2.4010 0.2038 20 6 -4.0672 -2.7841 0.2462 21 6 -4.1089 -4.1789 0.1380 22 7 -2.8828 -4.6206 0.0248 23 7 0.0746 -2.4479 0.0220 24 1 -0.3633 -0.1083 1.0219 25 1 -0.3633 0.9393 -0.4171 26 1 -0.3633 -0.8308 -0.6049 27 1 0.0358 3.0316 1.5883 28 1 3.1797 -3.6398 -0.2722 29 1 1.9178 -5.7782 -0.3719 30 1 -0.5571 -5.7113 -0.2012 31 1 -2.4027 -1.3874 0.2660 32 1 -4.9200 -2.1294 0.3479 33 1 -5.0017 -4.7867 0.1425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346970515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:12 Heat of formation + Delta-G solvation = 100.921000 kcal Electronic energy + Delta-G solvation = -20294.428709 eV Core-core repulsion = 17129.987906 eV Total energy + Delta-G solvation = -3164.440803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.56283 -41.37943 -39.68958 -36.86437 -34.59872 -34.25393 -33.18246 -31.33181 -30.46301 -28.34328 -27.08719 -25.11225 -25.00186 -22.53851 -21.90079 -21.03680 -19.26235 -18.93831 -18.31498 -17.22220 -16.90027 -16.68148 -16.59594 -15.97671 -15.84187 -15.54716 -14.76253 -14.54968 -14.46095 -14.35844 -13.74534 -13.65698 -13.40369 -13.13938 -13.10137 -12.69457 -12.49212 -12.11685 -11.87407 -11.48442 -11.18363 -10.96074 -10.92320 -10.22004 -10.18118 -9.76382 -9.30618 -8.43819 -6.09715 -0.48621 -0.11876 1.02310 1.07484 1.36885 1.39483 1.54793 1.85880 1.95486 2.20802 2.75204 2.77530 3.09802 3.23514 3.50149 3.86377 3.96288 3.97110 4.12641 4.26666 4.42005 4.58891 4.73262 4.88817 4.97422 5.05198 5.08078 5.10795 5.31798 5.36128 5.39738 5.65951 5.94925 6.04571 6.25138 6.40857 6.79632 7.02555 7.28235 7.87999 8.56277 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.005914 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.083628 B = 4733.489291 C = 6021.068135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.422 5.422 3 C -0.349 4.349 4 H 0.081 0.919 5 C 0.001 3.999 6 N -0.882 5.882 7 Si 1.000 3.000 8 H -0.269 1.269 9 H -0.261 1.261 10 H -0.272 1.272 11 C 0.460 3.540 12 O -0.625 6.625 13 C 0.116 3.884 14 C -0.140 4.140 15 C -0.034 4.034 16 C -0.154 4.154 17 C 0.342 3.658 18 N -0.339 5.339 19 C 0.051 3.949 20 C -0.256 4.256 21 C 0.071 3.929 22 N -0.310 5.310 23 N -0.496 5.496 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.279 0.721 28 H 0.152 0.848 29 H 0.197 0.803 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.184 0.816 33 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 -11.903 -2.675 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.136 5.136 3 C -0.477 4.477 4 H 0.098 0.902 5 C -0.203 4.203 6 N -0.519 5.519 7 Si 0.822 3.178 8 H -0.193 1.193 9 H -0.186 1.186 10 H -0.197 1.197 11 C 0.249 3.751 12 O -0.513 6.513 13 C -0.022 4.022 14 C -0.162 4.162 15 C -0.060 4.060 16 C -0.177 4.177 17 C 0.113 3.887 18 N -0.117 5.117 19 C -0.090 4.090 20 C -0.284 4.284 21 C -0.117 4.117 22 N -0.129 5.129 23 N -0.213 5.213 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.170 0.830 29 H 0.214 0.786 30 H 0.186 0.814 31 H 0.190 0.810 32 H 0.201 0.799 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.287 -11.921 -2.588 15.332 hybrid contribution 0.250 1.268 0.199 1.308 sum -9.038 -10.653 -2.389 14.173 Atomic orbital electron populations 1.21939 0.78710 1.00375 1.00503 1.43813 1.07490 1.04556 1.57734 1.19868 1.01798 0.85967 1.40057 0.90155 1.26358 0.96782 1.03609 0.93586 1.70056 1.19441 1.31654 1.30719 0.84793 0.78492 0.76029 0.78500 1.19279 1.18600 1.19748 1.18206 0.86909 0.83658 0.86281 1.90554 1.14257 1.86922 1.59605 1.20988 0.87587 0.95017 0.98621 1.22227 1.02760 0.91512 0.99702 1.21925 0.92334 0.99173 0.92536 1.21983 0.95889 0.97298 1.02518 1.18234 0.81750 0.90994 0.97691 1.45893 1.02947 1.06064 1.56813 1.23293 0.92448 0.93452 0.99777 1.22037 0.96343 0.96231 1.13774 1.24881 0.95828 0.95294 0.95675 1.77348 1.01005 1.08386 1.26184 1.67390 1.08411 1.28509 1.17014 0.94643 0.93417 0.89442 0.91091 0.83013 0.78583 0.81400 0.80972 0.79865 0.74836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.26 7.21 127.77 0.92 7.18 16 2 N -0.42 -23.52 3.00 -662.05 -1.99 -25.51 16 3 C -0.35 -20.37 9.19 84.13 0.77 -19.60 16 4 H 0.08 4.91 7.50 -2.91 -0.02 4.89 16 5 C 0.00 0.04 5.06 84.98 0.43 0.47 16 6 N -0.88 -47.48 10.86 21.69 0.24 -47.24 16 7 Si 1.00 42.10 29.57 68.60 2.03 44.13 16 8 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 11 C 0.46 24.77 7.60 86.83 0.66 25.43 16 12 O -0.62 -36.88 16.08 -3.93 -0.06 -36.94 16 13 C 0.12 4.97 6.63 41.85 0.28 5.25 16 14 C -0.14 -4.71 9.63 22.64 0.22 -4.49 16 15 C -0.03 -0.83 10.16 22.42 0.23 -0.60 16 16 C -0.15 -4.14 9.70 22.57 0.22 -3.92 16 17 C 0.34 11.62 7.55 132.93 1.00 12.62 16 18 N -0.34 -10.65 3.81 -192.18 -0.73 -11.38 16 19 C 0.05 1.50 11.10 83.39 0.93 2.42 16 20 C -0.26 -5.53 10.80 22.00 0.24 -5.29 16 21 C 0.07 1.41 12.02 85.26 1.02 2.43 16 22 N -0.31 -8.29 11.83 -56.97 -0.67 -8.97 16 23 N -0.50 -19.84 5.50 -181.94 -1.00 -20.84 16 24 H 0.03 1.81 7.89 -2.39 -0.02 1.79 16 25 H 0.05 2.41 6.74 -2.38 -0.02 2.39 16 26 H 0.09 3.92 4.82 -4.41 -0.02 3.90 16 27 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 28 H 0.15 5.00 7.65 -2.91 -0.02 4.98 16 29 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.17 3.70 7.68 -2.91 -0.02 3.68 16 31 H 0.17 5.34 7.25 -2.91 -0.02 5.32 16 32 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.24 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -73.74 290.63 5.86 -67.87 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.14 Total: 16.96 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.92 Total: 21.92 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -4.16 Total: -113.94 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.06 Total: -36.94 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -73.74 5.86 -67.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346970515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.793 kcal (2) G-P(sol) polarization free energy of solvation -73.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds