Wall clock time and date at job start Mon Mar 30 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36971 * 119.99950 * 2 1 4 4 H 1.08005 * 120.00090 * 203.16533 * 3 2 1 5 5 C 1.38984 * 120.00489 * 23.16517 * 3 2 1 6 6 N 1.31413 * 119.99343 * 14.75898 * 5 3 2 7 7 Si 1.86790 * 120.00155 * 194.75559 * 5 3 2 8 8 H 1.48500 * 109.47604 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47091 * 120.00111 * 7 5 3 10 10 H 1.48504 * 109.47213 * 239.99975 * 7 5 3 11 11 C 1.34773 * 119.99724 * 179.97438 * 2 1 3 12 12 O 1.21631 * 119.99933 * 185.42798 * 11 2 1 13 13 C 1.47341 * 119.99911 * 5.42958 * 11 2 1 14 14 C 1.41358 * 126.42157 * 338.23504 * 13 11 2 15 15 N 1.30461 * 108.07285 * 180.26404 * 14 13 11 16 16 N 1.39932 * 108.93541 * 0.02562 * 15 14 13 17 17 C 1.40164 * 125.76888 * 179.97438 * 16 15 14 18 18 C 1.39266 * 120.48898 * 0.04337 * 17 16 15 19 19 C 1.38505 * 118.36441 * 179.97438 * 18 17 16 20 20 C 1.38269 * 119.23411 * 0.02562 * 19 18 17 21 21 N 1.31868 * 120.90946 * 0.02562 * 20 19 18 22 22 C 1.31818 * 121.79433 * 359.67319 * 21 20 19 23 23 C 1.34557 * 108.46178 * 0.02562 * 16 15 14 24 24 H 1.09003 * 109.47453 * 263.99754 * 1 2 3 25 25 H 1.09007 * 109.47002 * 23.99447 * 1 2 3 26 26 H 1.08996 * 109.47268 * 143.98965 * 1 2 3 27 27 H 0.97004 * 119.99483 * 179.97438 * 6 5 3 28 28 H 1.07998 * 125.95862 * 0.24824 * 14 13 11 29 29 H 1.07998 * 120.81318 * 359.95747 * 18 17 16 30 30 H 1.07996 * 120.38245 * 180.02562 * 19 18 17 31 31 H 1.07997 * 119.54504 * 179.97438 * 20 19 18 32 32 H 1.07994 * 119.66331 * 180.29113 * 22 21 20 33 33 H 1.07999 * 126.31792 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1862 0.0000 4 1 3.1646 1.2239 -0.3679 5 6 1.5391 2.3414 0.4735 6 7 0.4344 2.2580 1.1803 7 14 2.2884 4.0123 0.1051 8 1 3.5214 3.8346 -0.7032 9 1 1.3134 4.8354 -0.6546 10 1 2.6257 4.6954 1.3798 11 6 2.1388 -1.1672 0.0005 12 8 3.3511 -1.1696 0.1002 13 6 1.4070 -2.4404 -0.1196 14 6 0.0428 -2.6559 0.1816 15 7 -0.2288 -3.9112 -0.0475 16 7 0.9305 -4.5515 -0.4992 17 6 1.0359 -5.9049 -0.8484 18 6 -0.0717 -6.7449 -0.7632 19 6 0.0819 -8.0744 -1.1196 20 6 1.3196 -8.5211 -1.5445 21 7 2.3491 -7.6999 -1.6130 22 6 2.2446 -6.4265 -1.2887 23 6 1.9274 -3.6487 -0.5406 24 1 -0.3634 -0.1075 1.0220 25 1 -0.3633 0.9389 -0.4179 26 1 -0.3633 -0.8312 -0.6042 27 1 0.0083 3.0642 1.5111 28 1 -0.6530 -1.9114 0.5392 29 1 -1.0267 -6.3688 -0.4271 30 1 -0.7554 -8.7544 -1.0664 31 1 1.4450 -9.5569 -1.8233 32 1 3.1092 -5.7836 -1.3622 33 1 2.9460 -3.8342 -0.8479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347566542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:43 Heat of formation + Delta-G solvation = 89.878470 kcal Electronic energy + Delta-G solvation = -19690.199703 eV Core-core repulsion = 16525.280060 eV Total energy + Delta-G solvation = -3164.919643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.83923 -41.02903 -39.87862 -36.69841 -35.26347 -33.65259 -33.33028 -31.41090 -30.63649 -28.33661 -26.82767 -25.17529 -24.95434 -22.96244 -22.09137 -20.72426 -19.43259 -18.86664 -17.97228 -17.51295 -17.08450 -16.65334 -16.33083 -16.24359 -15.73406 -15.66656 -15.03072 -14.71589 -14.50381 -14.25784 -14.04796 -13.65125 -13.20266 -13.16285 -13.01870 -12.54121 -12.35969 -12.27684 -12.07580 -11.74352 -10.99261 -10.79075 -10.71058 -10.48880 -10.25222 -9.68617 -9.32511 -8.36282 -5.96518 -0.49948 0.08470 0.83055 1.10035 1.14535 1.43913 1.44967 1.58164 2.28796 2.44893 2.71362 2.94877 3.15974 3.34132 3.39888 3.58582 3.76882 3.89211 3.96978 4.12395 4.31658 4.35289 4.54501 4.59186 4.65442 4.93236 4.98977 5.02363 5.25579 5.34149 5.43436 5.45939 5.87754 6.10585 6.33316 6.49729 6.79575 7.15424 7.43687 8.02523 8.67774 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.051110 B = 0.003787 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.706955 B = 7391.987849 C = 7849.513781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.449 5.449 3 C -0.343 4.343 4 H 0.074 0.926 5 C 0.000 4.000 6 N -0.891 5.891 7 Si 0.992 3.008 8 H -0.273 1.273 9 H -0.264 1.264 10 H -0.276 1.276 11 C 0.506 3.494 12 O -0.637 6.637 13 C -0.267 4.267 14 C 0.080 3.920 15 N -0.303 5.303 16 N -0.312 5.312 17 C 0.084 3.916 18 C -0.083 4.083 19 C -0.132 4.132 20 C 0.087 3.913 21 N -0.478 5.478 22 C 0.078 3.922 23 C 0.110 3.890 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.276 0.724 28 H 0.221 0.779 29 H 0.151 0.849 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.168 0.832 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 -17.816 -4.898 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.165 5.165 3 C -0.471 4.471 4 H 0.092 0.908 5 C -0.203 4.203 6 N -0.529 5.529 7 Si 0.815 3.185 8 H -0.197 1.197 9 H -0.189 1.189 10 H -0.202 1.202 11 C 0.296 3.704 12 O -0.527 6.527 13 C -0.281 4.281 14 C -0.106 4.106 15 N -0.122 5.122 16 N -0.086 5.086 17 C -0.010 4.010 18 C -0.110 4.110 19 C -0.152 4.152 20 C -0.071 4.071 21 N -0.187 5.187 22 C -0.081 4.081 23 C -0.037 4.037 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.237 0.763 29 H 0.169 0.831 30 H 0.201 0.799 31 H 0.215 0.785 32 H 0.185 0.815 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.632 -18.930 -5.036 20.382 hybrid contribution 0.226 2.240 0.452 2.297 sum -5.406 -16.690 -4.584 18.133 Atomic orbital electron populations 1.21960 0.79629 1.01449 1.00479 1.43596 1.06776 1.04273 1.61850 1.19695 1.00013 0.85423 1.42013 0.90794 1.26116 0.97024 1.02975 0.94185 1.70062 1.19933 1.30826 1.32045 0.84905 0.78431 0.76938 0.78230 1.19711 1.18867 1.20164 1.17588 0.86560 0.83282 0.82963 1.90548 1.15764 1.87763 1.58595 1.20447 0.95706 0.94887 1.17058 1.25147 0.95204 0.93722 0.96577 1.77106 1.05751 1.07629 1.21698 1.45587 1.07447 1.06690 1.48866 1.19020 0.98152 0.80477 1.03334 1.21645 0.98027 0.93838 0.97516 1.22516 1.00539 0.94657 0.97482 1.23564 0.87920 1.01073 0.94498 1.67835 1.33693 1.02728 1.14437 1.22742 0.95275 0.93053 0.97020 1.23120 0.95555 0.87501 0.97516 0.92917 0.91851 0.91094 0.91452 0.76293 0.83084 0.79857 0.78470 0.81503 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.72 7.13 127.77 0.91 5.63 16 2 N -0.45 -23.72 3.01 -662.70 -1.99 -25.71 16 3 C -0.34 -19.71 9.22 84.07 0.78 -18.93 16 4 H 0.07 4.52 7.49 -2.91 -0.02 4.50 16 5 C 0.00 -0.03 4.99 84.93 0.42 0.40 16 6 N -0.89 -46.65 10.88 21.67 0.24 -46.42 16 7 Si 0.99 42.09 29.58 68.60 2.03 44.12 16 8 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 11 C 0.51 26.22 7.59 86.64 0.66 26.88 16 12 O -0.64 -37.57 16.70 -4.13 -0.07 -37.64 16 13 C -0.27 -10.90 5.80 -20.14 -0.12 -11.01 16 14 C 0.08 2.81 9.73 85.66 0.83 3.65 16 15 N -0.30 -9.86 11.85 -56.22 -0.67 -10.53 16 16 N -0.31 -9.57 3.77 -185.84 -0.70 -10.27 16 17 C 0.08 2.09 6.70 38.19 0.26 2.35 16 18 C -0.08 -1.62 9.77 22.58 0.22 -1.39 16 19 C -0.13 -1.66 10.10 22.34 0.23 -1.43 16 20 C 0.09 1.21 11.18 84.69 0.95 2.15 16 21 N -0.48 -9.94 10.35 -195.35 -2.02 -11.97 16 22 C 0.08 1.78 10.62 84.83 0.90 2.68 16 23 C 0.11 3.75 10.69 84.25 0.90 4.65 16 24 H 0.05 2.29 7.32 -2.39 -0.02 2.28 16 25 H 0.06 2.93 6.65 -2.38 -0.02 2.92 16 26 H 0.07 2.60 5.01 -2.39 -0.01 2.59 16 27 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 28 H 0.22 6.92 5.06 -2.91 -0.01 6.91 16 29 H 0.15 2.88 7.77 -2.91 -0.02 2.86 16 30 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.17 3.46 6.74 -2.91 -0.02 3.44 16 33 H 0.21 5.99 7.04 -2.91 -0.02 5.97 16 Total: -1.00 -73.14 288.50 4.91 -68.24 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.16 Total: 14.57 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.93 Total: 15.61 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -5.15 Total: -104.90 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.07 Total: -37.64 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -73.14 4.91 -68.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347566542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.114 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds