Wall clock time and date at job start Mon Mar 30 2020 01:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36795 * 119.99655 * 2 1 4 4 H 1.08008 * 119.99530 * 160.35842 * 3 2 1 5 5 C 1.39098 * 120.00132 * 340.35161 * 3 2 1 6 6 N 1.31319 * 120.00436 * 344.08573 * 5 3 2 7 7 Si 1.86807 * 119.99773 * 164.08603 * 5 3 2 8 8 H 1.48506 * 109.47058 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47064 * 119.99917 * 7 5 3 10 10 H 1.48493 * 109.47272 * 240.00075 * 7 5 3 11 11 C 1.34768 * 119.99800 * 180.02562 * 2 1 3 12 12 O 1.21564 * 120.00257 * 184.60496 * 11 2 1 13 13 C 1.48007 * 120.00248 * 4.60437 * 11 2 1 14 14 C 1.40035 * 120.89497 * 29.27258 * 13 11 2 15 15 C 1.38016 * 119.12261 * 180.02562 * 14 13 11 16 16 N 1.31872 * 120.99191 * 359.73133 * 15 14 13 17 17 C 1.32260 * 121.98498 * 0.53837 * 16 15 14 18 18 N 1.39837 * 119.61365 * 179.74613 * 17 16 15 19 19 C 1.35836 * 126.10688 * 359.72371 * 18 17 16 20 20 C 1.35281 * 107.61366 * 180.02562 * 19 18 17 21 21 C 1.39953 * 107.97274 * 359.97438 * 20 19 18 22 22 N 1.30820 * 108.36552 * 0.26659 * 21 20 19 23 23 C 1.38862 * 120.76300 * 359.46857 * 17 16 15 24 24 H 1.08996 * 109.46900 * 210.92208 * 1 2 3 25 25 H 1.08998 * 109.46855 * 330.92158 * 1 2 3 26 26 H 1.09000 * 109.46641 * 90.92175 * 1 2 3 27 27 H 0.97001 * 120.00105 * 179.97438 * 6 5 3 28 28 H 1.07991 * 120.43984 * 359.97438 * 14 13 11 29 29 H 1.07998 * 119.50094 * 179.97438 * 15 14 13 30 30 H 1.07995 * 126.19606 * 0.06002 * 19 18 17 31 31 H 1.08006 * 126.01646 * 179.97438 * 20 19 18 32 32 H 1.08001 * 125.81762 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.53712 * 180.23496 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1490 1.1847 0.0000 4 1 3.1819 1.2119 0.3144 5 6 1.5142 2.3542 -0.4050 6 7 0.3858 2.2912 -1.0738 7 14 2.2669 4.0147 0.0023 8 1 3.5302 3.8138 0.7568 9 1 2.5537 4.7501 -1.2555 10 1 1.3156 4.8000 0.8290 11 6 2.1389 -1.1671 -0.0005 12 8 3.3516 -1.1690 0.0840 13 6 1.4024 -2.4468 -0.1040 14 6 0.1792 -2.5197 -0.7817 15 6 -0.4767 -3.7318 -0.8554 16 7 0.0342 -4.8150 -0.3035 17 6 1.1835 -4.7925 0.3506 18 7 1.6770 -5.9699 0.9213 19 6 1.0800 -7.1895 0.8828 20 6 1.8762 -8.0562 1.5497 21 6 2.9933 -7.3499 2.0100 22 7 2.8727 -6.1010 1.6395 23 6 1.9086 -3.6145 0.4722 24 1 -0.3633 -0.8816 0.5281 25 1 -0.3633 0.8981 0.4995 26 1 -0.3632 -0.0165 -1.0276 27 1 -0.0570 3.1068 -1.3559 28 1 -0.2457 -1.6390 -1.2400 29 1 -1.4207 -3.7949 -1.3763 30 1 0.1401 -7.4247 0.4057 31 1 1.6838 -9.1083 1.7004 32 1 3.8131 -7.7642 2.5780 33 1 2.8486 -3.6011 1.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352115670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:21 Heat of formation + Delta-G solvation = 115.533012 kcal Electronic energy + Delta-G solvation = -19864.244433 eV Core-core repulsion = 16700.437254 eV Total energy + Delta-G solvation = -3163.807179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.46729 -40.00619 -38.18321 -34.97898 -33.59203 -32.40060 -31.60334 -30.31311 -29.25742 -26.64067 -25.51544 -23.78948 -23.53062 -21.41763 -20.77283 -19.62797 -17.91202 -17.21047 -16.55126 -15.77685 -15.53141 -15.32972 -15.08175 -14.48930 -14.19219 -14.12282 -13.81600 -13.40998 -13.25238 -12.81615 -12.64027 -12.30215 -11.85592 -11.49672 -11.26064 -10.96390 -10.76635 -10.56415 -10.43746 -10.25734 -9.71668 -9.47506 -9.20828 -9.15727 -8.62133 -8.15463 -7.94285 -6.59082 -4.03804 0.79608 1.18280 2.13314 2.18821 2.74458 3.04412 3.15298 3.22511 3.62499 3.92971 4.18556 4.31579 4.53612 4.72326 4.88892 4.93088 5.17430 5.19238 5.33955 5.44413 5.55293 5.63883 5.87454 5.93326 6.05947 6.13954 6.41383 6.54057 6.59792 6.62042 6.96842 7.15874 7.35014 7.43586 7.88555 7.99467 8.25375 8.95319 9.15149 9.74189 10.44483 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038897 B = 0.004227 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.683464 B = 6622.737325 C = 7227.392939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.420 5.420 3 C -0.304 4.304 4 H 0.107 0.893 5 C 0.033 3.967 6 N -0.867 5.867 7 Si 0.930 3.070 8 H -0.265 1.265 9 H -0.279 1.279 10 H -0.278 1.278 11 C 0.464 3.536 12 O -0.581 6.581 13 C -0.028 4.028 14 C -0.172 4.172 15 C 0.122 3.878 16 N -0.510 5.510 17 C 0.350 3.650 18 N -0.318 5.318 19 C 0.078 3.922 20 C -0.273 4.273 21 C 0.055 3.945 22 N -0.279 5.279 23 C -0.121 4.121 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.273 0.727 28 H 0.161 0.839 29 H 0.168 0.832 30 H 0.181 0.819 31 H 0.153 0.847 32 H 0.191 0.809 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 -13.095 2.237 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.136 5.136 3 C -0.432 4.432 4 H 0.125 0.875 5 C -0.172 4.172 6 N -0.505 5.505 7 Si 0.756 3.244 8 H -0.189 1.189 9 H -0.205 1.205 10 H -0.203 1.203 11 C 0.253 3.747 12 O -0.466 6.466 13 C -0.040 4.040 14 C -0.193 4.193 15 C -0.035 4.035 16 N -0.225 5.225 17 C 0.124 3.876 18 N -0.096 5.096 19 C -0.064 4.064 20 C -0.302 4.302 21 C -0.133 4.133 22 N -0.098 5.098 23 C -0.145 4.145 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.178 0.822 29 H 0.185 0.815 30 H 0.198 0.802 31 H 0.171 0.829 32 H 0.208 0.792 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.403 -12.449 2.112 13.373 hybrid contribution 0.092 0.681 0.068 0.691 sum -4.312 -11.768 2.180 12.721 Atomic orbital electron populations 1.21977 0.80973 1.00262 1.01131 1.43527 1.05792 1.04760 1.59486 1.19865 0.98486 0.82985 1.41860 0.87483 1.25418 0.96413 1.00404 0.94985 1.69973 1.17680 1.29695 1.33159 0.85792 0.79418 0.80623 0.78555 1.18884 1.20457 1.20335 1.17702 0.87173 0.82690 0.87126 1.90637 1.13147 1.86312 1.56544 1.20684 0.93601 0.95296 0.94406 1.23049 0.95369 1.00618 1.00245 1.22378 0.99108 0.86388 0.95667 1.66623 1.11256 1.33185 1.11397 1.17494 0.91344 0.83577 0.95177 1.45795 1.16767 1.05820 1.41218 1.22883 0.99669 0.84322 0.99560 1.21601 0.97544 1.01349 1.09709 1.24127 0.99223 0.90738 0.99253 1.77570 0.99377 1.19874 1.12969 1.21645 1.01682 0.90021 1.01112 0.94494 0.90453 0.91835 0.91713 0.82168 0.81536 0.80223 0.82910 0.79249 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.09 7.04 59.85 0.42 2.51 16 2 N -0.42 -10.49 3.01 -123.22 -0.37 -10.86 16 3 C -0.30 -8.18 9.34 -15.02 -0.14 -8.32 16 4 H 0.11 3.04 7.35 -52.48 -0.39 2.65 16 5 C 0.03 0.83 5.01 -17.45 -0.09 0.74 16 6 N -0.87 -21.49 10.71 55.50 0.59 -20.90 16 7 Si 0.93 19.67 29.58 -169.99 -5.03 14.64 16 8 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 10 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 11 C 0.46 11.59 7.43 -12.26 -0.09 11.50 16 12 O -0.58 -16.55 16.43 5.31 0.09 -16.47 16 13 C -0.03 -0.57 5.38 -104.67 -0.56 -1.13 16 14 C -0.17 -2.86 7.73 -38.99 -0.30 -3.16 16 15 C 0.12 1.73 11.17 -17.62 -0.20 1.53 16 16 N -0.51 -8.10 9.83 -12.35 -0.12 -8.22 16 17 C 0.35 6.19 7.55 -154.42 -1.17 5.02 16 18 N -0.32 -5.21 3.81 -12.13 -0.05 -5.26 16 19 C 0.08 1.01 11.10 -16.83 -0.19 0.83 16 20 C -0.27 -3.00 10.80 -39.99 -0.43 -3.44 16 21 C 0.05 0.67 12.02 -17.34 -0.21 0.46 16 22 N -0.28 -4.54 11.83 30.64 0.36 -4.18 16 23 C -0.12 -2.39 9.28 -38.80 -0.36 -2.75 16 24 H 0.04 0.67 5.88 -51.93 -0.31 0.36 16 25 H 0.08 1.71 6.77 -51.93 -0.35 1.36 16 26 H 0.06 1.30 6.32 -51.93 -0.33 0.97 16 27 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 28 H 0.16 2.56 4.83 -52.49 -0.25 2.31 16 29 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.18 1.91 8.05 -52.49 -0.42 1.48 16 31 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.15 3.19 7.61 -52.49 -0.40 2.79 16 LS Contribution 289.65 15.07 4.37 4.37 Total: -1.00 -31.79 289.65 -6.32 -38.11 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -2.85 Total: 4.99 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -3.31 Total: 3.79 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.42 Total: -49.43 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.09 Total: -16.47 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.79 -6.32 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352115670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.644 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds