Wall clock time and date at job start Mon Mar 30 2020 01:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36795 * 119.99655 * 2 1 4 4 H 1.08008 * 119.99530 * 160.35842 * 3 2 1 5 5 C 1.39098 * 120.00132 * 340.35161 * 3 2 1 6 6 N 1.31319 * 120.00436 * 344.08573 * 5 3 2 7 7 Si 1.86807 * 119.99773 * 164.08603 * 5 3 2 8 8 H 1.48506 * 109.47058 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47064 * 119.99917 * 7 5 3 10 10 H 1.48493 * 109.47272 * 240.00075 * 7 5 3 11 11 C 1.34768 * 119.99800 * 180.02562 * 2 1 3 12 12 O 1.21564 * 120.00257 * 184.60496 * 11 2 1 13 13 C 1.48007 * 120.00248 * 4.60437 * 11 2 1 14 14 C 1.40035 * 120.89497 * 29.27258 * 13 11 2 15 15 C 1.38016 * 119.12261 * 180.02562 * 14 13 11 16 16 N 1.31872 * 120.99191 * 359.73133 * 15 14 13 17 17 C 1.32260 * 121.98498 * 0.53837 * 16 15 14 18 18 N 1.39837 * 119.61365 * 179.74613 * 17 16 15 19 19 C 1.35836 * 126.10688 * 359.72371 * 18 17 16 20 20 C 1.35281 * 107.61366 * 180.02562 * 19 18 17 21 21 C 1.39953 * 107.97274 * 359.97438 * 20 19 18 22 22 N 1.30820 * 108.36552 * 0.26659 * 21 20 19 23 23 C 1.38862 * 120.76300 * 359.46857 * 17 16 15 24 24 H 1.08996 * 109.46900 * 210.92208 * 1 2 3 25 25 H 1.08998 * 109.46855 * 330.92158 * 1 2 3 26 26 H 1.09000 * 109.46641 * 90.92175 * 1 2 3 27 27 H 0.97001 * 120.00105 * 179.97438 * 6 5 3 28 28 H 1.07991 * 120.43984 * 359.97438 * 14 13 11 29 29 H 1.07998 * 119.50094 * 179.97438 * 15 14 13 30 30 H 1.07995 * 126.19606 * 0.06002 * 19 18 17 31 31 H 1.08006 * 126.01646 * 179.97438 * 20 19 18 32 32 H 1.08001 * 125.81762 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.53712 * 180.23496 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1490 1.1847 0.0000 4 1 3.1819 1.2119 0.3144 5 6 1.5142 2.3542 -0.4050 6 7 0.3858 2.2912 -1.0738 7 14 2.2669 4.0147 0.0023 8 1 3.5302 3.8138 0.7568 9 1 2.5537 4.7501 -1.2555 10 1 1.3156 4.8000 0.8290 11 6 2.1389 -1.1671 -0.0005 12 8 3.3516 -1.1690 0.0840 13 6 1.4024 -2.4468 -0.1040 14 6 0.1792 -2.5197 -0.7817 15 6 -0.4767 -3.7318 -0.8554 16 7 0.0342 -4.8150 -0.3035 17 6 1.1835 -4.7925 0.3506 18 7 1.6770 -5.9699 0.9213 19 6 1.0800 -7.1895 0.8828 20 6 1.8762 -8.0562 1.5497 21 6 2.9933 -7.3499 2.0100 22 7 2.8727 -6.1010 1.6395 23 6 1.9086 -3.6145 0.4722 24 1 -0.3633 -0.8816 0.5281 25 1 -0.3633 0.8981 0.4995 26 1 -0.3632 -0.0165 -1.0276 27 1 -0.0570 3.1068 -1.3559 28 1 -0.2457 -1.6390 -1.2400 29 1 -1.4207 -3.7949 -1.3763 30 1 0.1401 -7.4247 0.4057 31 1 1.6838 -9.1083 1.7004 32 1 3.8131 -7.7642 2.5780 33 1 2.8486 -3.6011 1.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352115670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:20 Heat of formation + Delta-G solvation = 94.988868 kcal Electronic energy + Delta-G solvation = -19865.135294 eV Core-core repulsion = 16700.437254 eV Total energy + Delta-G solvation = -3164.698040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.57622 -41.43234 -39.89699 -36.93447 -34.92326 -33.93175 -33.31304 -31.40347 -30.46058 -28.41672 -27.26923 -25.16981 -24.94892 -22.72910 -21.81447 -21.06927 -19.34159 -19.05841 -18.08279 -17.25344 -17.11623 -16.61081 -16.52666 -16.00184 -15.82948 -15.62574 -15.11298 -14.62180 -14.50270 -14.38131 -13.97680 -13.68687 -13.59386 -13.24950 -12.91553 -12.53428 -12.52173 -12.14120 -11.80783 -11.47171 -11.22745 -11.05199 -10.98275 -10.47806 -10.22159 -9.87949 -9.31250 -8.50603 -6.07118 -0.49882 -0.22824 1.01889 1.07685 1.35295 1.40669 1.53929 1.84747 1.95534 2.19227 2.67225 2.74390 3.00741 3.30524 3.45186 3.69395 3.86874 3.90953 4.08654 4.16325 4.44141 4.50159 4.63862 4.68746 4.77091 4.89699 5.04241 5.06751 5.21835 5.34762 5.35523 5.61496 5.92983 6.03998 6.32402 6.34970 6.78870 6.99501 7.22980 7.81680 8.52082 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038897 B = 0.004227 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.683464 B = 6622.737325 C = 7227.392939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.430 5.430 3 C -0.353 4.353 4 H 0.074 0.926 5 C 0.010 3.990 6 N -0.874 5.874 7 Si 0.992 3.008 8 H -0.277 1.277 9 H -0.270 1.270 10 H -0.260 1.260 11 C 0.451 3.549 12 O -0.635 6.635 13 C -0.045 4.045 14 C -0.168 4.168 15 C 0.148 3.852 16 N -0.500 5.500 17 C 0.357 3.643 18 N -0.342 5.342 19 C 0.065 3.935 20 C -0.257 4.257 21 C 0.064 3.936 22 N -0.337 5.337 23 C -0.144 4.144 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.282 0.718 28 H 0.170 0.830 29 H 0.224 0.776 30 H 0.203 0.797 31 H 0.194 0.806 32 H 0.227 0.773 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 -14.896 1.834 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.145 5.145 3 C -0.481 4.481 4 H 0.092 0.908 5 C -0.195 4.195 6 N -0.511 5.511 7 Si 0.815 3.185 8 H -0.202 1.202 9 H -0.195 1.195 10 H -0.184 1.184 11 C 0.241 3.759 12 O -0.524 6.524 13 C -0.057 4.057 14 C -0.189 4.189 15 C -0.010 4.010 16 N -0.214 5.214 17 C 0.130 3.870 18 N -0.120 5.120 19 C -0.075 4.075 20 C -0.284 4.284 21 C -0.124 4.124 22 N -0.156 5.156 23 C -0.168 4.168 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.188 0.812 29 H 0.240 0.760 30 H 0.220 0.780 31 H 0.211 0.789 32 H 0.243 0.757 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.000 -14.281 1.710 15.996 hybrid contribution 0.859 1.030 0.204 1.357 sum -6.141 -13.251 1.914 14.729 Atomic orbital electron populations 1.22017 0.78622 1.00930 1.01764 1.43726 1.07314 1.04294 1.59120 1.19740 0.98150 0.84928 1.45247 0.90788 1.26099 0.96771 1.02688 0.93942 1.69988 1.17816 1.31054 1.32227 0.84903 0.78432 0.76597 0.78567 1.20167 1.19526 1.18446 1.18449 0.87000 0.84296 0.86117 1.90569 1.15675 1.87483 1.58683 1.20328 0.95337 0.93104 0.96911 1.23136 0.93812 1.02311 0.99640 1.23247 0.99814 0.84530 0.93372 1.66879 1.10113 1.33493 1.10953 1.17537 0.91250 0.83597 0.94569 1.45882 1.17514 1.06246 1.42407 1.23491 1.00722 0.83332 0.99961 1.22112 0.95994 1.02770 1.07552 1.24912 1.00215 0.89627 0.97687 1.77584 1.00557 1.22456 1.15029 1.21410 1.01506 0.91241 1.02664 0.91609 0.91808 0.91114 0.90750 0.81250 0.75976 0.78016 0.78932 0.75711 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.55 7.04 127.77 0.90 5.45 16 2 N -0.43 -22.42 3.01 -662.04 -1.99 -24.41 16 3 C -0.35 -19.98 9.34 84.13 0.79 -19.20 16 4 H 0.07 4.56 7.35 -2.91 -0.02 4.54 16 5 C 0.01 0.50 5.01 84.98 0.43 0.93 16 6 N -0.87 -42.98 10.71 21.69 0.23 -42.75 16 7 Si 0.99 40.70 29.58 68.60 2.03 42.72 16 8 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 9 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 11 C 0.45 23.94 7.43 86.84 0.65 24.59 16 12 O -0.63 -39.29 16.43 -3.92 -0.06 -39.36 16 13 C -0.05 -1.91 5.38 -19.90 -0.11 -2.01 16 14 C -0.17 -5.34 7.73 22.65 0.18 -5.17 16 15 C 0.15 3.66 11.17 84.63 0.94 4.61 16 16 N -0.50 -14.55 9.83 -192.98 -1.90 -16.45 16 17 C 0.36 12.49 7.55 132.75 1.00 13.49 16 18 N -0.34 -10.98 3.81 -192.30 -0.73 -11.72 16 19 C 0.07 1.52 11.10 83.39 0.93 2.45 16 20 C -0.26 -4.76 10.80 22.00 0.24 -4.52 16 21 C 0.06 1.42 12.02 85.26 1.02 2.44 16 22 N -0.34 -11.04 11.83 -56.98 -0.67 -11.72 16 23 C -0.14 -5.97 9.28 22.77 0.21 -5.76 16 24 H 0.07 2.33 5.88 -2.39 -0.01 2.31 16 25 H 0.06 2.82 6.77 -2.39 -0.02 2.80 16 26 H 0.07 2.83 6.32 -2.39 -0.02 2.82 16 27 H 0.28 12.74 8.31 -92.71 -0.77 11.97 16 28 H 0.17 5.07 4.83 -2.92 -0.01 5.05 16 29 H 0.22 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.20 3.58 8.05 -2.91 -0.02 3.56 16 31 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.23 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.12 5.71 7.61 -2.91 -0.02 5.68 16 Total: -1.00 -75.19 289.65 5.22 -69.96 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.15 Total: 16.42 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 7.17 Total: 17.29 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -5.07 Total: -107.04 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.06 Total: -39.36 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -75.19 5.22 -69.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352115670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.952 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds