Wall clock time and date at job start Mon Mar 30 2020 01:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34592 * 125.74649 * 2 1 4 4 N 1.30868 * 107.63000 * 179.97438 * 3 2 1 5 5 C 1.34556 * 107.27037 * 359.97438 * 4 3 2 6 6 C 1.47824 * 126.04998 * 179.97438 * 5 4 3 7 7 O 1.21572 * 119.99703 * 180.02562 * 6 5 4 8 8 N 1.34766 * 119.99854 * 0.30947 * 6 5 4 9 9 C 1.39127 * 119.99696 * 175.43556 * 8 6 5 10 10 C 1.39515 * 119.83263 * 215.02530 * 9 8 6 11 11 C 1.36366 * 120.16469 * 179.75795 * 10 9 8 12 12 C 1.40880 * 119.82902 * 0.52093 * 11 10 9 13 13 C 1.41136 * 120.16302 * 179.71578 * 12 11 10 14 14 H 1.08004 * 119.99991 * 214.80304 * 13 12 11 15 15 C 1.39907 * 119.99810 * 34.80242 * 13 12 11 16 16 N 1.30872 * 120.00312 * 355.56037 * 15 13 12 17 17 Si 1.86797 * 120.00048 * 175.55921 * 15 13 12 18 18 H 1.48497 * 109.47092 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47211 * 120.00030 * 17 15 13 20 20 H 1.48496 * 109.47379 * 240.00133 * 17 15 13 21 21 C 1.40887 * 119.67575 * 359.73850 * 12 11 10 22 22 C 1.36355 * 119.83307 * 359.97438 * 21 12 11 23 23 N 1.28857 * 125.74814 * 180.31416 * 2 1 3 24 24 H 1.08999 * 109.47640 * 89.99866 * 1 2 3 25 25 H 1.09005 * 109.47064 * 209.99807 * 1 2 3 26 26 H 1.08997 * 109.47411 * 329.99817 * 1 2 3 27 27 H 1.07997 * 126.18088 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00366 * 355.43013 * 8 6 5 29 29 H 1.07997 * 119.92162 * 0.02562 * 10 9 8 30 30 H 1.07993 * 120.08537 * 180.23908 * 11 10 9 31 31 H 0.96992 * 120.00725 * 180.02562 * 16 15 13 32 32 H 1.08007 * 120.08015 * 179.97438 * 21 12 11 33 33 H 1.07994 * 119.91451 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2512 1.0924 0.0000 4 7 3.4950 0.6854 0.0006 5 6 3.4751 -0.6600 0.0015 6 6 4.6573 -1.5475 0.0018 7 8 4.5113 -2.7544 0.0022 8 7 5.8969 -1.0186 0.0075 9 6 7.0077 -1.8508 0.1037 10 6 8.1338 -1.4263 0.8095 11 6 9.2245 -2.2384 0.9122 12 6 9.2162 -3.5044 0.2942 13 6 10.3434 -4.3481 0.3910 14 1 10.6130 -4.9863 -0.4376 15 6 11.1115 -4.3579 1.5603 16 7 10.8375 -3.5231 2.5303 17 14 12.5283 -5.5624 1.7371 18 1 12.6296 -6.3911 0.5091 19 1 13.7946 -4.8118 1.9330 20 1 12.2875 -6.4413 2.9095 21 6 8.0774 -3.9238 -0.4214 22 6 6.9920 -3.1033 -0.5106 23 7 2.2177 -1.0458 -0.0057 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9162 2.1190 -0.0004 28 1 6.0146 -0.0579 -0.0556 29 1 8.1403 -0.4539 1.2793 30 1 10.0940 -1.9101 1.4621 31 1 11.3702 -3.5295 3.3408 32 1 8.0641 -4.8929 -0.8981 33 1 6.1185 -3.4233 -1.0591 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352167220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:05 Heat of formation + Delta-G solvation = 87.016461 kcal Electronic energy + Delta-G solvation = -19315.482976 eV Core-core repulsion = 16150.439227 eV Total energy + Delta-G solvation = -3165.043749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.49129 -39.44743 -37.15735 -34.73701 -34.39306 -32.84060 -31.82005 -29.56664 -29.13325 -27.87196 -25.27636 -23.64943 -22.39886 -21.41902 -20.68003 -19.75219 -18.03656 -17.26353 -16.87655 -16.65303 -16.03320 -15.25924 -15.04421 -14.55857 -13.97961 -13.82485 -13.54272 -13.44677 -12.87072 -12.63494 -12.08508 -12.02940 -11.67679 -11.33144 -11.13783 -10.95242 -10.70870 -10.55713 -10.52086 -10.07101 -9.62475 -9.50435 -9.40994 -9.19436 -8.85437 -7.49821 -6.82066 -6.58107 -4.30205 1.39169 2.05301 2.06993 2.75991 3.12607 3.13551 3.17740 3.20188 3.44788 3.76793 4.01646 4.08020 4.24580 4.63090 4.70039 4.75074 4.91180 5.06786 5.69315 5.91466 6.20508 6.26220 6.34480 6.49428 6.79180 6.97099 7.10607 7.23714 7.33428 7.68687 7.73969 7.84094 8.00675 8.11643 8.30856 8.36500 8.65586 8.75481 8.96681 9.04036 10.32860 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.056831 B = 0.003344 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.569576 B = 8370.757152 C = 8581.042950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.310 5.310 3 C 0.186 3.814 4 N -0.486 5.486 5 C 0.155 3.845 6 C 0.595 3.405 7 O -0.510 6.510 8 N -0.626 5.626 9 C 0.002 3.998 10 C -0.115 4.115 11 C -0.141 4.141 12 C 0.101 3.899 13 C -0.459 4.459 14 H 0.077 0.923 15 C 0.069 3.931 16 N -0.811 5.811 17 Si 0.915 3.085 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.204 4.204 22 C -0.085 4.085 23 N -0.257 5.257 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.225 0.775 28 H 0.406 0.594 29 H 0.094 0.906 30 H 0.133 0.867 31 H 0.277 0.723 32 H 0.097 0.903 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 10.910 -2.834 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.106 5.106 3 C -0.109 4.109 4 N -0.211 5.211 5 C -0.126 4.126 6 C 0.377 3.623 7 O -0.383 6.383 8 N -0.269 5.269 9 C -0.090 4.090 10 C -0.136 4.136 11 C -0.161 4.161 12 C 0.098 3.902 13 C -0.490 4.490 14 H 0.095 0.905 15 C -0.146 4.146 16 N -0.438 5.438 17 Si 0.741 3.259 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.224 4.224 22 C -0.105 4.105 23 N -0.095 5.095 24 H 0.107 0.893 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.241 0.759 28 H 0.241 0.759 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.877 9.615 -2.592 18.742 hybrid contribution 0.176 0.340 0.292 0.482 sum -15.701 9.956 -2.300 18.733 Atomic orbital electron populations 1.22207 0.72462 1.05861 1.04853 1.47390 1.09233 1.03954 1.49978 1.26469 0.85997 0.95908 1.02568 1.71286 1.20321 1.09663 1.19870 1.23999 0.92339 0.89305 1.06919 1.16322 0.81038 0.85937 0.78961 1.90818 1.85113 1.13306 1.49031 1.42614 1.03625 1.10423 1.70246 1.17255 0.87895 0.94510 1.09315 1.20327 0.94233 0.99434 0.99574 1.21192 0.98130 0.93451 1.03366 1.17749 0.91644 0.91116 0.89671 1.19540 1.08541 1.20562 1.00359 0.90519 1.25888 0.97507 0.95776 0.95436 1.69769 1.36392 1.32056 1.05586 0.86144 0.80236 0.80412 0.79157 1.18593 1.20025 1.20015 1.20802 0.93888 0.99247 1.08509 1.20423 0.97940 0.93459 0.98643 1.74385 1.02963 1.13023 1.19147 0.89256 0.88236 0.88100 0.75861 0.75924 0.88824 0.84929 0.91196 0.88472 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 11.38 59.84 0.68 1.04 16 2 N -0.31 -3.18 3.72 -69.40 -0.26 -3.43 16 3 C 0.19 1.77 12.62 -90.48 -1.14 0.62 16 4 N -0.49 -6.90 11.10 -12.37 -0.14 -7.04 16 5 C 0.15 2.68 7.96 -156.35 -1.24 1.44 16 6 C 0.60 12.32 7.66 -12.34 -0.09 12.22 16 7 O -0.51 -12.29 14.50 5.30 0.08 -12.21 16 8 N -0.63 -12.52 5.30 -10.60 -0.06 -12.57 16 9 C 0.00 0.06 6.30 -83.60 -0.53 -0.47 16 10 C -0.12 -2.73 9.90 -39.78 -0.39 -3.12 16 11 C -0.14 -3.71 8.61 -39.26 -0.34 -4.05 16 12 C 0.10 2.75 5.55 -106.80 -0.59 2.16 16 13 C -0.46 -12.42 9.02 -37.86 -0.34 -12.76 16 14 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 15 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 16 N -0.81 -21.37 10.60 55.55 0.59 -20.78 16 17 Si 0.92 19.26 29.56 -169.99 -5.03 14.24 16 18 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C -0.20 -5.30 9.74 -39.26 -0.38 -5.69 16 22 C -0.08 -2.11 8.61 -39.79 -0.34 -2.45 16 23 N -0.26 -4.05 12.09 32.07 0.39 -3.66 16 24 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.23 0.82 8.06 -52.49 -0.42 0.39 16 28 H 0.41 6.94 8.53 -40.82 -0.35 6.59 16 29 H 0.09 1.95 8.06 -52.49 -0.42 1.52 16 30 H 0.13 3.57 6.13 -52.49 -0.32 3.25 16 31 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 32 H 0.10 2.38 8.06 -52.48 -0.42 1.96 16 33 H 0.11 2.67 6.22 -52.49 -0.33 2.34 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -34.71 296.57 -7.85 -42.56 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.08 Total: 7.81 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -4.81 Total: -9.38 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.52 Total: -47.48 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.71 -7.85 -42.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352167220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.574 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds