Wall clock time and date at job start Mon Mar 30 2020 01:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34592 * 125.74649 * 2 1 4 4 N 1.30868 * 107.63000 * 179.97438 * 3 2 1 5 5 C 1.34556 * 107.27037 * 359.97438 * 4 3 2 6 6 C 1.47824 * 126.04998 * 179.97438 * 5 4 3 7 7 O 1.21572 * 119.99703 * 180.02562 * 6 5 4 8 8 N 1.34766 * 119.99854 * 0.30947 * 6 5 4 9 9 C 1.39127 * 119.99696 * 175.43556 * 8 6 5 10 10 C 1.39515 * 119.83263 * 215.02530 * 9 8 6 11 11 C 1.36366 * 120.16469 * 179.75795 * 10 9 8 12 12 C 1.40880 * 119.82902 * 0.52093 * 11 10 9 13 13 C 1.41136 * 120.16302 * 179.71578 * 12 11 10 14 14 H 1.08004 * 119.99991 * 214.80304 * 13 12 11 15 15 C 1.39907 * 119.99810 * 34.80242 * 13 12 11 16 16 N 1.30872 * 120.00312 * 355.56037 * 15 13 12 17 17 Si 1.86797 * 120.00048 * 175.55921 * 15 13 12 18 18 H 1.48497 * 109.47092 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47211 * 120.00030 * 17 15 13 20 20 H 1.48496 * 109.47379 * 240.00133 * 17 15 13 21 21 C 1.40887 * 119.67575 * 359.73850 * 12 11 10 22 22 C 1.36355 * 119.83307 * 359.97438 * 21 12 11 23 23 N 1.28857 * 125.74814 * 180.31416 * 2 1 3 24 24 H 1.08999 * 109.47640 * 89.99866 * 1 2 3 25 25 H 1.09005 * 109.47064 * 209.99807 * 1 2 3 26 26 H 1.08997 * 109.47411 * 329.99817 * 1 2 3 27 27 H 1.07997 * 126.18088 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00366 * 355.43013 * 8 6 5 29 29 H 1.07997 * 119.92162 * 0.02562 * 10 9 8 30 30 H 1.07993 * 120.08537 * 180.23908 * 11 10 9 31 31 H 0.96992 * 120.00725 * 180.02562 * 16 15 13 32 32 H 1.08007 * 120.08015 * 179.97438 * 21 12 11 33 33 H 1.07994 * 119.91451 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2512 1.0924 0.0000 4 7 3.4950 0.6854 0.0006 5 6 3.4751 -0.6600 0.0015 6 6 4.6573 -1.5475 0.0018 7 8 4.5113 -2.7544 0.0022 8 7 5.8969 -1.0186 0.0075 9 6 7.0077 -1.8508 0.1037 10 6 8.1338 -1.4263 0.8095 11 6 9.2245 -2.2384 0.9122 12 6 9.2162 -3.5044 0.2942 13 6 10.3434 -4.3481 0.3910 14 1 10.6130 -4.9863 -0.4376 15 6 11.1115 -4.3579 1.5603 16 7 10.8375 -3.5231 2.5303 17 14 12.5283 -5.5624 1.7371 18 1 12.6296 -6.3911 0.5091 19 1 13.7946 -4.8118 1.9330 20 1 12.2875 -6.4413 2.9095 21 6 8.0774 -3.9238 -0.4214 22 6 6.9920 -3.1033 -0.5106 23 7 2.2177 -1.0458 -0.0057 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9162 2.1190 -0.0004 28 1 6.0146 -0.0579 -0.0556 29 1 8.1403 -0.4539 1.2793 30 1 10.0940 -1.9101 1.4621 31 1 11.3702 -3.5295 3.3408 32 1 8.0641 -4.8929 -0.8981 33 1 6.1185 -3.4233 -1.0591 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352167220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:04 Heat of formation + Delta-G solvation = 63.954757 kcal Electronic energy + Delta-G solvation = -19316.483006 eV Core-core repulsion = 16150.439227 eV Total energy + Delta-G solvation = -3166.043780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.45121 -41.16452 -39.04654 -36.26479 -35.57899 -34.66942 -32.80302 -31.51978 -30.95373 -28.84232 -26.92345 -25.02253 -23.54633 -23.08858 -22.35578 -21.33964 -19.41063 -19.14283 -18.09757 -17.77979 -17.37167 -17.01723 -16.21952 -16.14157 -15.65922 -15.30769 -14.86830 -14.51468 -14.05692 -13.97464 -13.91553 -13.60558 -13.26989 -12.90033 -12.85899 -12.77252 -12.50490 -11.84618 -11.56891 -11.46113 -11.40972 -11.30843 -11.06487 -10.72862 -10.56316 -9.48989 -8.77317 -8.50751 -6.33623 0.19718 0.82824 1.11895 1.18179 1.32295 1.41218 1.51190 1.56967 2.13231 2.24284 2.27918 2.80479 3.10700 3.50680 3.67034 3.89701 4.34947 4.39122 4.42472 4.49929 4.69937 4.80039 4.90765 5.08570 5.12892 5.30093 5.31590 5.39822 5.66577 5.68773 5.86560 5.97484 6.11134 6.36032 6.51596 6.66665 6.94004 6.96068 7.01259 7.19797 8.42390 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.056831 B = 0.003344 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.569576 B = 8370.757152 C = 8581.042950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.300 5.300 3 C 0.209 3.791 4 N -0.510 5.510 5 C 0.123 3.877 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.618 5.618 9 C 0.012 3.988 10 C -0.112 4.112 11 C -0.158 4.158 12 C 0.071 3.929 13 C -0.494 4.494 14 H 0.075 0.925 15 C 0.027 3.973 16 N -0.839 5.839 17 Si 0.991 3.009 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.270 1.270 21 C -0.219 4.219 22 C -0.095 4.095 23 N -0.284 5.284 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.147 0.853 27 H 0.287 0.713 28 H 0.421 0.579 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.286 0.714 32 H 0.100 0.900 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.569 12.988 -2.506 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.096 5.096 3 C -0.085 4.085 4 N -0.236 5.236 5 C -0.156 4.156 6 C 0.380 3.620 7 O -0.430 6.430 8 N -0.263 5.263 9 C -0.081 4.081 10 C -0.132 4.132 11 C -0.178 4.178 12 C 0.069 3.931 13 C -0.524 4.524 14 H 0.093 0.907 15 C -0.185 4.185 16 N -0.467 5.467 17 Si 0.812 3.188 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.195 1.195 21 C -0.239 4.239 22 C -0.115 4.115 23 N -0.126 5.126 24 H 0.127 0.873 25 H 0.113 0.887 26 H 0.165 0.835 27 H 0.302 0.698 28 H 0.259 0.741 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.547 11.749 -2.274 21.239 hybrid contribution 0.383 -0.142 0.168 0.442 sum -17.164 11.607 -2.106 20.827 Atomic orbital electron populations 1.22790 0.68893 1.07958 1.06790 1.47854 1.10977 1.02914 1.47809 1.27578 0.84316 0.97688 0.98929 1.71205 1.23278 1.07928 1.21225 1.23182 0.91566 0.90229 1.10624 1.16759 0.81968 0.85948 0.77295 1.90778 1.85988 1.15459 1.50815 1.42472 1.02832 1.10783 1.70207 1.17318 0.88800 0.94257 1.07715 1.20547 0.93348 1.00343 0.98937 1.21184 0.98812 0.93717 1.04049 1.18067 0.92389 0.91972 0.90686 1.19767 1.09714 1.21546 1.01401 0.90706 1.26777 0.99858 0.97398 0.94481 1.69825 1.37496 1.33228 1.06129 0.85021 0.76845 0.77882 0.79068 1.18361 1.18655 1.19463 1.20924 0.94167 0.99789 1.08984 1.20514 0.97501 0.94305 0.99154 1.74274 1.02977 1.15817 1.19505 0.87348 0.88744 0.83490 0.69829 0.74109 0.85696 0.85929 0.90371 0.88191 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.38 127.77 1.45 1.76 16 2 N -0.30 -5.18 3.72 -373.47 -1.39 -6.57 16 3 C 0.21 3.09 12.62 180.30 2.27 5.37 16 4 N -0.51 -13.34 11.10 -193.05 -2.14 -15.48 16 5 C 0.12 4.18 7.96 137.10 1.09 5.27 16 6 C 0.60 25.05 7.66 86.78 0.66 25.72 16 7 O -0.55 -27.67 14.50 -3.94 -0.06 -27.73 16 8 N -0.62 -24.79 5.30 -305.72 -1.62 -26.41 16 9 C 0.01 0.59 6.30 38.60 0.24 0.83 16 10 C -0.11 -5.31 9.90 22.14 0.22 -5.10 16 11 C -0.16 -8.49 8.61 22.48 0.19 -8.29 16 12 C 0.07 4.04 5.55 -21.27 -0.12 3.92 16 13 C -0.49 -27.59 9.02 23.39 0.21 -27.38 16 14 H 0.07 4.04 7.85 -2.91 -0.02 4.02 16 15 C 0.03 1.40 5.42 85.24 0.46 1.87 16 16 N -0.84 -44.92 10.60 21.82 0.23 -44.69 16 17 Si 0.99 39.70 29.56 68.60 2.03 41.73 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 21 C -0.22 -11.84 9.74 22.48 0.22 -11.62 16 22 C -0.09 -4.89 8.61 22.14 0.19 -4.70 16 23 N -0.28 -8.66 12.09 -52.46 -0.63 -9.30 16 24 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.15 -0.69 8.14 -2.39 -0.02 -0.71 16 27 H 0.29 0.17 8.06 -2.91 -0.02 0.14 16 28 H 0.42 14.12 8.53 -92.71 -0.79 13.33 16 29 H 0.13 5.06 8.06 -2.91 -0.02 5.03 16 30 H 0.12 6.80 6.13 -2.91 -0.02 6.78 16 31 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 32 H 0.10 5.17 8.06 -2.91 -0.02 5.14 16 33 H 0.11 5.47 6.22 -2.91 -0.02 5.45 16 Total: -1.00 -80.30 296.57 3.89 -76.41 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.37 Total: 24.40 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 7.10 Total: -12.36 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.55 Total: -102.45 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.73 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -80.30 3.89 -76.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352167220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.365 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds